Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G3766 Fragaria x ananassa HOM05D003159 ORTHO05D003780 4.5e-86 321.2 165 100.0
FAN02G2337 Fragaria x ananassa HOM05D003159 ORTHO05D003780 1.2e-62 243.4 132 96.2
FAN14G5085 Fragaria x ananassa HOM05D003159 ORTHO05D003780 3.0e-53 212.2 133 86.5
FvH4_6g42830 Fragaria vesca HOM05D003159 ORTHO05D003780 1.2e-51 206.8 122 88.5
FAN05G1365 Fragaria x ananassa HOM05D003159 ORTHO05D003780 3.8e-40 168.7 110 84.5
RcHm_v2.0_Chr3g0450361 Rosa chinensis HOM05D003159 ORTHO05D003780 2.7e-38 162.5 132 73.5
Prupe.6G346800 Prunus persica HOM05D003159 ORTHO05D003780 2.6e-33 146.0 131 66.4
MD04G1227600 Malus domestica HOM05D003159 ORTHO05D003780 3.8e-32 142.1 131 64.1
MD12G1244300 Malus domestica HOM05D003159 ORTHO05D003780 8.4e-32 141.0 131 63.4
Duzib128G1665 Durio zibethinus HOM05D003159 ORTHO05D003780 4.2e-31 138.7 131 64.1
Gohir.A09G017500 Gossypium hirsutum HOM05D003159 ORTHO05D003780 4.2e-31 138.7 131 63.4
Gohir.D13G031700 Gossypium hirsutum HOM05D003159 ORTHO05D003780 4.2e-31 138.7 131 63.4
Gorai.013G036100 Gossypium raimondii HOM05D003159 ORTHO05D003780 4.2e-31 138.7 131 63.4
Gorai.007G279300 Gossypium raimondii HOM05D003159 ORTHO05D003780 5.4e-31 138.3 131 62.6
Potri.013G043500 Populus trichocarpa HOM05D003159 ORTHO05D003780 5.4e-31 138.3 130 63.8
CSS0035771 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 7.1e-31 137.9 131 64.1
Thecc.05G277700 Theobroma cacao HOM05D003159 ORTHO05D003780 9.3e-31 137.5 130 63.1
GSVIVG01036258001 Vitis vinifera HOM05D003159 ORTHO05D003780 9.3e-31 137.5 131 62.6
CANSAT54G0311 Cannabis sativa HOM05D003159 ORTHO05D003780 1.2e-30 137.1 132 61.4
Cpa.g.sc162.4 Carica papaya HOM05D003159 ORTHO05D003780 1.2e-30 137.1 131 62.6
Oeu054532.1 Olea europaea HOM05D003159 ORTHO05D003780 1.2e-30 137.1 131 61.8
Sed0018461 Sechium edule HOM05D003159 ORTHO05D003780 1.6e-30 136.7 131 62.6
FAN08G2202 Fragaria x ananassa HOM05D003159 ORTHO05D003780 2.1e-30 136.3 131 64.1
FAN18G4088 Fragaria x ananassa HOM05D003159 ORTHO05D003780 2.1e-30 136.3 131 64.1
Manes.15G108700 Manihot esculenta HOM05D003159 ORTHO05D003780 2.1e-30 136.3 131 61.8
CsaV3_2G033180 Cucumis sativus L. HOM05D003159 ORTHO05D003780 2.7e-30 136.0 131 62.6
FvH4_5g12790 Fragaria vesca HOM05D003159 ORTHO05D003780 2.7e-30 136.0 131 64.1
FAN18G4090 Fragaria x ananassa HOM05D003159 ORTHO05D003780 2.7e-30 136.0 131 64.1
Dinv05722 Davidia involucrata HOM05D003159 ORTHO05D003780 3.5e-30 135.6 133 61.7
Peaxi162Scf00120g00723 Petunia axillaris HOM05D003159 ORTHO05D003780 3.5e-30 135.6 132 60.6
Nn3g19572 Nelumbo nucifera HOM05D003159 ORTHO05D003780 4.6e-30 135.2 131 62.6
SalBow8G0718 Salvia bowleyana HOM05D003159 ORTHO05D003780 6.0e-30 134.8 131 61.8
Sabra19G0017400 Salix brachista HOM05D003159 ORTHO05D003780 7.8e-30 134.4 130 61.5
MELO3C008089.2 Cucumis melo HOM05D003159 ORTHO05D003780 1.0e-29 134.0 131 61.8
Nitab4.5_0001781g0080 Nicotiana tabacum HOM05D003159 ORTHO05D003780 1.3e-29 133.7 132 60.6
Potri.019G012300 Populus trichocarpa HOM05D003159 ORTHO05D003780 1.3e-29 133.7 130 61.5
QL01p030114 Quercus lobata HOM05D003159 ORTHO05D003780 1.3e-29 133.7 131 60.3
Solyc11g006340.2 Solanum lycopersicum HOM05D003159 ORTHO05D003780 1.3e-29 133.7 139 57.6
Sopen11g002240 Solanum pennellii HOM05D003159 ORTHO05D003780 1.3e-29 133.7 139 57.6
CAN.G143.64 Capsicum annuum HOM05D003159 ORTHO05D003780 1.7e-29 133.3 139 57.6
Migut.F01579 Erythranthe guttata HOM05D003159 ORTHO05D003780 1.7e-29 133.3 131 60.3
Gohir.D11G260700 Gossypium hirsutum HOM05D003159 ORTHO05D003780 1.7e-29 133.3 131 61.1
vmacro19526 Vaccinium macrocarpon HOM05D003159 ORTHO05D003780 1.7e-29 133.3 131 63.4
vmacro20008 Vaccinium macrocarpon HOM05D003159 ORTHO05D003780 1.7e-29 133.3 131 63.4
Sabra19G0024900 Salix brachista HOM05D003159 ORTHO05D003780 2.3e-29 132.9 130 60.8
Actinidia06777 Actinidia chinensis HOM05D003159 ORTHO05D003780 3.0e-29 132.5 132 60.6
PGSC0003DMG400000995 Solanum tuberosum HOM05D003159 ORTHO05D003780 3.0e-29 132.5 139 57.6
SGA_v2.0_scaffold4G01959 Striga asiatica HOM05D003159 ORTHO05D003780 3.0e-29 132.5 131 61.1
CiPaw.08G119500 Carya illinoinensis HOM05D003159 ORTHO05D003780 5.1e-29 131.7 130 61.5
Eucgr.J00270 Eucalyptus grandis HOM05D003159 ORTHO05D003780 6.6e-29 131.3 129 61.2
Phvul.007G188800 Phaseolus vulgaris HOM05D003159 ORTHO05D003780 8.7e-29 131.0 131 60.3
Glyma.10G163700 Glycine max HOM05D003159 ORTHO05D003780 1.5e-28 130.2 131 60.3
COL.COLO4_15406 Corchorus olitorius HOM05D003159 ORTHO05D003780 1.9e-28 129.8 131 61.1
HanXRQChr05g0152861 Helianthus annuus HOM05D003159 ORTHO05D003780 1.9e-28 129.8 132 59.8
TAR362G0530 Trochodendron aralioides HOM05D003159 ORTHO05D003780 2.5e-28 129.4 131 59.5
PGR031G1742 Punica granatum HOM05D003159 ORTHO05D003780 4.3e-28 128.6 132 56.8
HanXRQChr04g0112121 Helianthus annuus HOM05D003159 ORTHO05D003780 5.6e-28 128.3 132 59.1
MSTRG.927 Avicennia marina HOM05D003159 ORTHO05D003780 7.3e-28 127.9 131 58.8
ECA248G3699 Erigeron canadensis HOM05D003159 ORTHO05D003780 7.3e-28 127.9 132 59.1
DCAR_028953 Daucus carota HOM05D003159 ORTHO05D003780 9.6e-28 127.5 131 60.3
Glyma.20G226300 Glycine max HOM05D003159 ORTHO05D003780 9.6e-28 127.5 131 59.5
TPR.G26626 Trifolium pratense HOM05D003159 ORTHO05D003780 9.6e-28 127.5 132 57.6
TPR.G33936 Trifolium pratense HOM05D003159 ORTHO05D003780 9.6e-28 127.5 132 57.6
Ciclev10027983m.g Citrus clementina HOM05D003159 ORTHO05D003780 1.3e-27 127.1 131 59.5
Rhsim01G0186900 Rhododendron simsii HOM05D003159 ORTHO05D003780 1.3e-27 127.1 139 59.7
TWI81G0941 Tripterygium wilfordii HOM05D003159 ORTHO05D003780 2.8e-27 125.9 129 58.9
Lj5g0023348 Lotus japonicus HOM05D003159 ORTHO05D003780 3.6e-27 125.6 131 58.0
arahy.Tifrunner.gnm1.ann1.N0IL4Q Arachis hypogaea HOM05D003159 ORTHO05D003780 1.4e-26 123.6 130 58.5
arahy.Tifrunner.gnm1.ann1.W48W00 Arachis hypogaea HOM05D003159 ORTHO05D003780 1.4e-26 123.6 130 58.5
AUR62033998 Chenopodium quinoa HOM05D003159 ORTHO05D003780 1.4e-26 123.6 131 58.0
Lsat_1_v5_gn_9_121981 Lactuca sativa HOM05D003159 ORTHO05D003780 1.8e-26 123.2 132 58.3
AL4G34620 Arabidopsis lyrata HOM05D003159 ORTHO05D003780 2.4e-26 122.9 130 57.7
Aqoxy4G01990 Aquilegia oxysepala HOM05D003159 ORTHO05D003780 3.1e-26 122.5 131 56.5
Aa31LG8G11740 Aethionema arabicum HOM05D003159 ORTHO05D003780 4.0e-26 122.1 130 57.7
Ah.09g228380 Amaranthus hybridus HOM05D003159 ORTHO05D003780 4.0e-26 122.1 131 57.3
Aqoxy6G02795 Aquilegia oxysepala HOM05D003159 ORTHO05D003780 4.0e-26 122.1 131 57.3
Cc02_g09140 Coffea canephora HOM05D003159 ORTHO05D003780 4.0e-26 122.1 131 58.8
Sp4g20070 Schrenkiella parvula HOM05D003159 ORTHO05D003780 4.0e-26 122.1 131 55.7
THA.LOC104808027 Tarenaya hassleriana HOM05D003159 ORTHO05D003780 4.0e-26 122.1 130 56.9
BcaC01g05601 Brassica carinata HOM05D003159 ORTHO05D003780 5.3e-26 121.7 131 55.7
A03p20800 Brassica napus HOM05D003159 ORTHO05D003780 5.3e-26 121.7 131 55.7
BraA03t11320Z Brassica rapa HOM05D003159 ORTHO05D003780 5.3e-26 121.7 131 55.7
Aa31sc70G90 Aethionema arabicum HOM05D003159 ORTHO05D003780 6.9e-26 121.3 130 56.9
AT2G37690 Arabidopsis thaliana HOM05D003159 ORTHO05D003780 6.9e-26 121.3 130 56.9
BcaB06g29020 Brassica carinata HOM05D003159 ORTHO05D003780 6.9e-26 121.3 131 55.7
Carub.0004s1964 Capsella rubella HOM05D003159 ORTHO05D003780 9.0e-26 120.9 131 55.7
Thhalv10016367m.g Eutrema salsugineum HOM05D003159 ORTHO05D003780 9.0e-26 120.9 130 56.2
C03p24440 Brassica napus HOM05D003159 ORTHO05D003780 1.2e-25 120.6 131 55.0
Medtr1g080500 Medicago truncatula HOM05D003159 ORTHO05D003780 1.2e-25 120.6 132 56.1
ATR0111G007 Amborella trichopoda HOM05D003159 ORTHO05D003780 1.5e-25 120.2 131 57.3
BcaB01g03763 Brassica carinata HOM05D003159 ORTHO05D003780 1.5e-25 120.2 131 55.0
BcaC02g07498 Brassica carinata HOM05D003159 ORTHO05D003780 1.5e-25 120.2 131 55.0
A04p28880 Brassica napus HOM05D003159 ORTHO05D003780 1.5e-25 120.2 131 55.0
C04p66140 Brassica napus HOM05D003159 ORTHO05D003780 1.5e-25 120.2 131 55.0
BolC4t28117H Brassica oleracea HOM05D003159 ORTHO05D003780 1.5e-25 120.2 131 55.0
BraA04t18362Z Brassica rapa HOM05D003159 ORTHO05D003780 1.5e-25 120.2 131 55.0
CARHR131850 Cardamine hirsuta HOM05D003159 ORTHO05D003780 2.6e-25 119.4 130 56.2
AT2G05140 Arabidopsis thaliana HOM05D003159 ORTHO05D003780 3.4e-25 119.0 130 56.2
Sc06g0010270 Simmondsia chinensis HOM05D003159 ORTHO05D003780 3.4e-25 119.0 129 58.9
Haze_04383 Corylus avellana HOM05D003159 ORTHO05D003780 4.5e-25 118.6 131 58.0
Hund02191 Selenicereus undatus HOM05D003159 ORTHO05D003780 7.6e-25 117.9 129 55.8
DCAR_001864 Daucus carota HOM05D003159 ORTHO05D003780 9.9e-25 117.5 143 53.1
QL07p003261 Quercus lobata HOM05D003159 ORTHO05D003780 1.3e-24 117.1 131 56.5
Sabra19G0025000 Salix brachista HOM05D003159 ORTHO05D003780 2.2e-24 116.3 130 57.7
Sabra19G0025100 Salix brachista HOM05D003159 ORTHO05D003780 2.2e-24 116.3 130 57.7
BolC3t14843H Brassica oleracea HOM05D003159 ORTHO05D003780 2.9e-24 115.9 121 57.9
HPP92_021777 Vanilla planifolia HOM05D003159 ORTHO05D003780 2.9e-24 115.9 130 53.8
Lalb_Chr06g0168161 Lupinus albus HOM05D003159 ORTHO05D003780 3.8e-24 115.5 130 55.4
Lalb_Chr21g0311061 Lupinus albus HOM05D003159 ORTHO05D003780 1.9e-23 113.2 130 55.4
PSO675G5476 Papaver somniferum HOM05D003159 ORTHO05D003780 9.3e-23 110.9 140 51.4
MBI12_g21500_MAGBIO Magnolia biondii HOM05D003159 ORTHO05D003780 1.6e-22 110.2 131 51.9
Sabra19G0025200 Salix brachista HOM05D003159 ORTHO05D003780 1.6e-22 110.2 140 53.6
Sabra19G0025600 Salix brachista HOM05D003159 ORTHO05D003780 2.1e-22 109.8 140 53.6
PSO541G5176 Papaver somniferum HOM05D003159 ORTHO05D003780 2.7e-22 109.4 140 50.0
Nitab4.5_0007901g0030 Nicotiana tabacum HOM05D003159 ORTHO05D003780 7.9e-22 107.8 146 50.7
VMungo0720G2291 Vigna mungo HOM05D003159 ORTHO05D003780 7.9e-22 107.8 110 60.9
PSO170G0868 Papaver somniferum HOM05D003159 ORTHO05D003780 1.0e-21 107.5 132 50.0
Rhsim05G0176200 Rhododendron simsii HOM05D003159 ORTHO05D003780 1.3e-21 107.1 110 63.6
EL10Ac8g19239 Beta vulgaris HOM05D003159 ORTHO05D003780 1.8e-21 106.7 157 45.2
PSO782G2231 Papaver somniferum HOM05D003159 ORTHO05D003780 1.8e-21 106.7 132 50.0
unitig_22.g5684 Utricularia gibba HOM05D003159 ORTHO05D003780 2.3e-21 106.3 132 53.0
Ca_10033_v3 Cicer arietinum L. HOM05D003159 ORTHO05D003780 5.1e-21 105.1 110 58.2
SMO270G0125 Selaginella moellendorffii HOM05D003159 ORTHO05D003780 8.7e-21 104.4 131 46.6
Mapoly0046s0034 Marchantia polymorpha HOM05D003159 ORTHO05D003780 2.5e-20 102.8 132 48.5
Pp3c2_24240 Physcomitrium patens HOM05D003159 ORTHO05D003780 3.3e-20 102.4 132 49.2
Os01g0199900 Oryza sativa ssp. japonica HOM05D003159 ORTHO05D003780 4.3e-20 102.1 132 47.7
Psat6g145160 Pisum sativum HOM05D003159 ORTHO05D003780 5.6e-20 101.7 112 56.2
Zm00001eb120570 Zea mays HOM05D003159 ORTHO05D003780 5.6e-20 101.7 130 49.2
SHI06090 Sapria himalayana HOM05D003159 ORTHO05D003780 3.6e-19 99.0 130 50.0
CDE05G0407 Ceratophyllum demersum HOM05D003159 ORTHO05D003780 8.1e-19 97.8 130 48.5
CDE11G0603 Ceratophyllum demersum HOM05D003159 ORTHO05D003780 1.1e-18 97.4 130 47.7
MCO10G267 Micromonas commoda HOM05D003159 ORTHO05D003780 1.1e-18 97.4 130 46.9
Sabra19G0025400 Salix brachista HOM05D003159 ORTHO05D003780 1.4e-18 97.1 103 58.3
AUR62027480 Chenopodium quinoa HOM05D003159 ORTHO05D003780 4.0e-18 95.5 107 57.0
Sabra19G0025900 Salix brachista HOM05D003159 ORTHO05D003780 1.3e-16 90.5 103 57.3
Cre12.g503300 Chlamydomonas reinhardtii HOM05D003159 ORTHO05D003780 2.2e-16 89.7 134 44.0
QL03p028499 Quercus lobata HOM05D003159 ORTHO05D003780 2.2e-16 89.7 131 47.3
PSO170G3230 Papaver somniferum HOM05D003159 ORTHO05D003780 2.9e-16 89.4 132 46.2
THA.LOC104799866 Tarenaya hassleriana HOM05D003159 ORTHO05D003780 3.8e-16 89.0 83 60.2
Cfa025150 Carpinus fangiana HOM05D003159 ORTHO05D003780 4.9e-16 88.6 132 41.7
Hma1.2p1_0345F.1_g131280 Hydrangea macrophylla HOM05D003159 ORTHO05D003780 4.9e-16 88.6 60 78.3
arahy.Tifrunner.gnm1.ann1.H397QS Arachis hypogaea HOM05D003159 ORTHO05D003780 3.2e-15 85.9 60 76.7
Lj3C918G0 Lonicera japonica HOM05D003159 ORTHO05D003780 3.2e-15 85.9 126 44.4
PRCOL_00005277 Prasinoderma coloniale HOM05D003159 ORTHO05D003780 3.2e-15 85.9 134 45.5
TAR362G1104 Trochodendron aralioides HOM05D003159 ORTHO05D003468 1.6e-14 83.6 60 76.7
SMO358G0312 Selaginella moellendorffii HOM05D003159 ORTHO05D003780 2.1e-14 83.2 143 39.9
BcaB02g09259 Brassica carinata HOM05D003159 ORTHO05D003780 1.0e-13 80.9 104 48.1
Sed0012102 Sechium edule HOM05D003159 ORTHO05D003780 2.5e-12 76.3 131 44.3
Glyma.01G101050 Glycine max HOM05D003159 ORTHO05D003780 3.3e-12 75.9 58 72.4
SEGI_34284 Sequoiadendron giganteum HOM05D003159 ORTHO05D003780 5.6e-12 75.1 60 66.7
ClCG11G008930 Citrullus lanatus HOM05D003159 ORTHO05D003780 2.1e-11 73.2 60 71.7
Lsat_1_v5_gn_3_133181 Lactuca sativa HOM05D003297 ORTHO05D004027 8.1e-11 71.2 52 73.1
CBR_g8948 Chara braunii HOM05D003159 ORTHO05D003780 6.9e-10 68.2 105 42.9
TAR362G0177 Trochodendron aralioides HOM05D003159 ORTHO05D003780 7.6e-09 64.7 90 50.0
C09p45540 Brassica napus HOM05D003159 ORTHO05D003780 2.9e-08 62.8 128 36.7
Gorai.007G279200 Gossypium raimondii HOM05D003159 ORTHO05D003780 4.9e-08 62.0 54 61.1
GSVIVG01036259001 Vitis vinifera HOM05D003159 ORTHO05D003780 2.1e-06 56.6 104 44.2


User provided reference genes

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