Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G3437 Fragaria x ananassa HOM05D005749 ORTHO05D007208 7.2e-187 657.1 343 100.0
FAN05G4959 Fragaria x ananassa HOM05D005749 ORTHO05D007208 2.1e-178 629.0 369 91.3
FAN02G1517 Fragaria x ananassa HOM05D005749 ORTHO05D007208 2.8e-178 628.6 369 91.1
FvH4_6g14940 Fragaria vesca HOM05D005749 ORTHO05D007208 1.5e-176 622.9 369 90.2
FAN14G3553 Fragaria x ananassa HOM05D005749 ORTHO05D007208 1.5e-176 622.9 369 90.2
RcHm_v2.0_Chr3g0468141 Rosa chinensis HOM05D005749 ORTHO05D007208 4.7e-170 601.3 377 86.2
Prupe.6G244800 Prunus persica HOM05D005749 ORTHO05D007208 1.8e-153 546.2 378 76.2
MD04G1111300 Malus domestica HOM05D005749 ORTHO05D007208 7.1e-150 534.3 374 75.9
Dinv35687 Davidia involucrata HOM05D005749 ORTHO05D007208 9.9e-128 460.7 302 81.1
QL07p045817 Quercus lobata HOM05D005749 ORTHO05D007208 1.4e-126 456.8 383 67.4
Actinidia11228 Actinidia chinensis HOM05D005749 ORTHO05D007208 3.2e-126 455.7 387 67.4
Haze_20679 Corylus avellana HOM05D005749 ORTHO05D007208 7.1e-126 454.5 382 66.8
CiPaw.10G138600 Carya illinoinensis HOM05D005749 ORTHO05D007208 1.3e-124 450.3 305 78.7
Cfa017475 Carpinus fangiana HOM05D005749 ORTHO05D007208 3.0e-124 449.1 368 67.9
COL.COLO4_10301 Corchorus olitorius HOM05D005749 ORTHO05D007208 1.1e-123 447.2 373 67.8
CSS0045869 Camellia sinensis var. sinensis HOM05D005749 ORTHO05D007208 2.5e-123 446.0 385 66.2
Gorai.002G252100 Gossypium raimondii HOM05D005749 ORTHO05D007208 3.3e-123 445.7 371 65.8
Ciclev10011952m.g Citrus clementina HOM05D005749 ORTHO05D007208 4.3e-123 445.3 387 67.4
AUR62016425 Chenopodium quinoa HOM05D005749 ORTHO05D007208 1.3e-122 443.7 354 70.3
Gohir.D01G207000 Gossypium hirsutum HOM05D005749 ORTHO05D007208 2.1e-122 443.0 371 65.5
Gohir.A01G218100 Gossypium hirsutum HOM05D005749 ORTHO05D007208 1.1e-121 440.7 371 65.2
GSVIVG01025567001 Vitis vinifera HOM05D005749 ORTHO05D007208 1.4e-121 440.3 361 69.0
VMungo0720G0421 Vigna mungo HOM05D005749 ORTHO05D007208 4.0e-121 438.7 365 67.7
Sc07g0006200 Simmondsia chinensis HOM05D005749 ORTHO05D007208 9.0e-121 437.6 306 75.5
Migut.J00398 Erythranthe guttata HOM05D005749 ORTHO05D007208 2.6e-120 436.0 305 77.4
Nitab4.5_0002073g0030 Nicotiana tabacum HOM05D005749 ORTHO05D007208 3.4e-120 435.6 306 75.5
Solyc10g085980.2 Solanum lycopersicum HOM05D005749 ORTHO05D007208 3.4e-120 435.6 362 66.9
TAR623G1622 Trochodendron aralioides HOM05D005749 ORTHO05D007208 3.4e-120 435.6 387 63.6
HanXRQChr11g0349581 Helianthus annuus HOM05D005749 ORTHO05D007208 4.5e-120 435.3 360 68.6
Duzib093G1962 Durio zibethinus HOM05D005749 ORTHO05D007208 5.8e-120 434.9 369 65.9
Thecc.05G051000 Theobroma cacao HOM05D005749 ORTHO05D007208 5.8e-120 434.9 368 66.0
Lj5g0012474 Lotus japonicus HOM05D005749 ORTHO05D007208 9.9e-120 434.1 369 66.1
Sopen10g035350 Solanum pennellii HOM05D005749 ORTHO05D007208 9.9e-120 434.1 362 66.9
RhsimUnG0120200 Rhododendron simsii HOM05D005749 ORTHO05D007208 6.4e-119 431.4 322 73.0
Eucgr.K03191 Eucalyptus grandis HOM05D005749 ORTHO05D007208 8.4e-119 431.0 303 75.9
Hma1.2p1_0350F.1_g132660 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 8.4e-119 431.0 259 84.6
BolC9t59305H Brassica oleracea HOM05D005749 ORTHO05D007208 1.1e-118 430.6 370 65.9
PGSC0003DMG400017609 Solanum tuberosum HOM05D005749 ORTHO05D007208 1.1e-118 430.6 382 64.1
Ca_02301_v3 Cicer arietinum L. HOM05D005749 ORTHO05D007208 1.4e-118 430.3 367 64.9
CAN.G933.18 Capsicum annuum HOM05D005749 ORTHO05D007208 1.9e-118 429.9 362 67.4
C09p64740 Brassica napus HOM05D005749 ORTHO05D007208 2.5e-118 429.5 370 65.9
THA.LOC104816307 Tarenaya hassleriana HOM05D005749 ORTHO05D007208 2.5e-118 429.5 293 78.8
Glyma.10G047600 Glycine max HOM05D005749 ORTHO05D007208 4.2e-118 428.7 367 65.4
Lalb_Chr02g0153481 Lupinus albus HOM05D005749 ORTHO05D007208 5.5e-118 428.3 374 63.4
Cc06_g03360 Coffea canephora HOM05D005749 ORTHO05D007208 7.1e-118 427.9 307 75.2
Sp6g31500 Schrenkiella parvula HOM05D005749 ORTHO05D007208 9.3e-118 427.6 296 76.4
MD12G1129500 Malus domestica HOM05D005749 ORTHO05D007208 2.1e-117 426.4 340 68.8
arahy.Tifrunner.gnm1.ann1.F15EJL Arachis hypogaea HOM05D005749 ORTHO05D007208 4.6e-117 425.2 369 64.5
Thhalv10013777m.g Eutrema salsugineum HOM05D005749 ORTHO05D007208 4.6e-117 425.2 329 69.9
Medtr1g067200 Medicago truncatula HOM05D005749 ORTHO05D007208 4.6e-117 425.2 363 64.5
SalBow3G2006 Salvia bowleyana HOM05D005749 ORTHO05D007208 6.0e-117 424.9 297 76.8
A10p25670 Brassica napus HOM05D005749 ORTHO05D007208 7.9e-117 424.5 271 81.9
BraA10t44632Z Brassica rapa HOM05D005749 ORTHO05D007208 7.9e-117 424.5 271 81.9
vmacro20079 Vaccinium macrocarpon HOM05D005749 ORTHO05D007208 7.9e-117 424.5 426 61.3
Aqoxy2G01923 Aquilegia oxysepala HOM05D005749 ORTHO05D007208 1.0e-116 424.1 308 74.4
BcaNung06325 Brassica carinata HOM05D005749 ORTHO05D007208 1.0e-116 424.1 279 79.9
C02p05630 Brassica napus HOM05D005749 ORTHO05D007208 1.0e-116 424.1 258 84.1
BraA02t05118Z Brassica rapa HOM05D005749 ORTHO05D007208 1.0e-116 424.1 258 84.1
TPR.G35663 Trifolium pratense HOM05D005749 ORTHO05D007208 1.3e-116 423.7 361 63.2
CARHR200990 Cardamine hirsuta HOM05D005749 ORTHO05D007208 1.8e-116 423.3 284 78.5
ECA248G2107 Erigeron canadensis HOM05D005749 ORTHO05D007208 1.8e-116 423.3 304 75.7
A02p01390 Brassica napus HOM05D005749 ORTHO05D007208 2.3e-116 422.9 258 84.1
ClCG04G008720 Citrullus lanatus HOM05D005749 ORTHO05D007208 2.3e-116 422.9 367 65.1
CsaV3_4G024440 Cucumis sativus L. HOM05D005749 ORTHO05D007208 2.3e-116 422.9 364 64.8
Potri.006G133900 Populus trichocarpa HOM05D005749 ORTHO05D007208 3.9e-116 422.2 260 84.2
SGA_v2.0_scaffold75G24898 Striga asiatica HOM05D005749 ORTHO05D007208 3.9e-116 422.2 260 83.1
PGR004G0882 Punica granatum HOM05D005749 ORTHO05D007208 6.7e-116 421.4 302 75.2
Carub.0006s1064 Capsella rubella HOM05D005749 ORTHO05D007208 8.7e-116 421.0 299 75.3
AT5G12130 Arabidopsis thaliana HOM05D005749 ORTHO05D007208 1.1e-115 420.6 293 77.5
Lalb_Chr20g0112991 Lupinus albus HOM05D005749 ORTHO05D007208 1.9e-115 419.9 259 83.0
Glyma.13G135400 Glycine max HOM05D005749 ORTHO05D007208 2.5e-115 419.5 358 66.2
MELO3C003076.2 Cucumis melo HOM05D005749 ORTHO05D007208 9.6e-115 417.5 364 65.4
Aa31LG3G15070 Aethionema arabicum HOM05D005749 ORTHO05D007208 2.1e-114 416.4 299 74.6
AL6G22910 Arabidopsis lyrata HOM05D005749 ORTHO05D007208 1.1e-113 414.1 290 76.2
PSO339G5588 Papaver somniferum HOM05D005749 ORTHO05D007208 9.0e-113 411.0 260 81.9
PSO384G0170 Papaver somniferum HOM05D005749 ORTHO05D007208 9.0e-113 411.0 260 81.5
BolC2t06507H Brassica oleracea HOM05D005749 ORTHO05D007208 1.2e-112 410.6 247 85.0
Lj2A105T62 Lonicera japonica HOM05D005749 ORTHO05D007208 3.4e-112 409.1 309 73.1
unitig_27.g25368 Utricularia gibba HOM05D005749 ORTHO05D007208 1.3e-111 407.1 260 80.4
DCAR_014958 Daucus carota HOM05D005749 ORTHO05D007208 2.5e-107 392.9 260 78.8
HPP92_000647 Vanilla planifolia HOM05D005749 ORTHO05D007208 2.5e-107 392.9 276 73.2
Lsat_1_v5_gn_1_53521 Lactuca sativa HOM05D005749 ORTHO05D007208 5.7e-107 391.7 386 60.6
HPP92_000699 Vanilla planifolia HOM05D005749 ORTHO05D007208 7.4e-107 391.3 276 72.8
Sed0002515 Sechium edule HOM05D005749 ORTHO05D007208 3.7e-106 389.0 339 63.4
FAN09G4246 Fragaria x ananassa HOM05D005749 ORTHO05D007208 1.4e-105 387.1 207 99.5
CANSAT80G2775 Cannabis sativa HOM05D005749 ORTHO05D007208 5.3e-105 385.2 343 64.7
Oeu029112.2 Olea europaea HOM05D000267 ORTHO05D000298 5.9e-104 381.7 259 78.8
Os05g0121200 Oryza sativa ssp. japonica HOM05D005749 ORTHO05D007208 5.5e-102 375.2 258 73.6
Manes.08G001100 Manihot esculenta HOM05D005749 ORTHO05D007208 1.6e-101 373.6 324 63.3
Zm00001eb265640 Zea mays HOM05D005749 ORTHO05D007208 1.6e-101 373.6 288 67.0
MBI13_g05975_MAGBIO Magnolia biondii HOM05D005749 ORTHO05D007208 4.3e-99 365.5 273 70.3
Zm00001eb355290 Zea mays HOM05D005749 ORTHO05D007208 1.1e-97 360.9 278 67.3
arahy.Tifrunner.gnm1.ann1.R14JEG Arachis hypogaea HOM05D005749 ORTHO05D007208 5.3e-97 358.6 322 63.7
arahy.Tifrunner.gnm1.ann1.SNR3S1 Arachis hypogaea HOM05D005749 ORTHO05D007208 1.5e-96 357.1 431 51.0
Pp3c12_18750 Physcomitrium patens HOM05D005749 ORTHO05D007208 7.7e-96 354.8 287 64.5
arahy.Tifrunner.gnm1.ann1.V0P37H Arachis hypogaea HOM05D005749 ORTHO05D007208 1.0e-95 354.4 436 50.0
Mapoly0068s0066 Marchantia polymorpha HOM05D005749 ORTHO05D007208 1.3e-95 354.0 272 66.9
Nitab4.5_0000754g0010 Nicotiana tabacum HOM05D005749 ORTHO05D007208 1.7e-95 353.6 347 58.8
EL10Ac7g17315 Beta vulgaris HOM05D005749 ORTHO05D007208 8.5e-95 351.3 392 55.6
Hund12066 Selenicereus undatus HOM05D005749 ORTHO05D007208 1.6e-93 347.1 300 66.0
AagrBONN_evm.TU.Sc2ySwM_362.1198 Anthoceros agrestis HOM05D005749 ORTHO05D007208 7.9e-93 344.7 278 62.9
Hma1.2p1_0350F.1_g132650 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 2.0e-91 340.1 324 60.2
Psat6g125120 Pisum sativum HOM05D005749 ORTHO05D007208 6.1e-85 318.5 297 62.3
Atru.chr8.2516 Acer truncatum HOM05D005749 ORTHO05D007208 2.2e-79 300.1 295 61.4
Ah.08g212020 Amaranthus hybridus HOM05D005749 ORTHO05D007208 1.1e-78 297.7 366 52.7
AUR62011608 Chenopodium quinoa HOM05D005749 ORTHO05D007208 1.4e-76 290.8 389 51.4
Peaxi162Scf00146g01323 Petunia axillaris HOM05D005749 ORTHO05D007208 6.8e-76 288.5 186 80.6
MCO03G081 Micromonas commoda HOM05D005749 ORTHO05D007208 7.5e-75 285.0 261 57.9
MCO03G201 Micromonas commoda HOM05D005749 ORTHO05D007208 4.8e-74 282.3 259 57.9
Sabra06G0105200 Salix brachista HOM05D005749 ORTHO05D007208 2.2e-71 273.5 291 59.5
Cre17.g712400 Chlamydomonas reinhardtii HOM05D005749 ORTHO05D007208 3.8e-71 272.7 262 58.0
SMO201G0179 Selaginella moellendorffii HOM05D005749 ORTHO05D007208 4.7e-69 265.8 187 70.1
Phvul.007G161800 Phaseolus vulgaris HOM05D005749 ORTHO05D007208 1.2e-67 261.2 256 59.4
PRCOL_00003295 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 2.0e-67 260.4 257 54.1
ATR0594G051 Amborella trichopoda HOM05D005749 ORTHO05D007208 1.1e-65 254.6 157 82.8
PRCOL_00006447 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 1.5e-59 234.2 261 50.2
RcHm_v2.0_Chr2g0168111 Rosa chinensis HOM05D005749 ORTHO05D007208 1.3e-58 231.1 128 95.3
Cpa.g.sc114.34 Carica papaya HOM05D005749 ORTHO05D007208 2.9e-55 219.9 180 67.2
Actinidia19727 Actinidia chinensis HOM05D005749 ORTHO05D007208 3.9e-55 219.5 129 82.9
SEGI_07760 Sequoiadendron giganteum HOM05D005749 ORTHO05D007208 1.2e-53 214.5 136 78.7
Cpa.g.sc114.35 Carica papaya HOM05D005749 ORTHO05D007208 3.7e-50 203.0 121 86.8
Hma1.2p1_0111F.1_g053580 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 1.4e-41 174.5 108 80.6
PRCOL_00000418 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 2.1e-37 160.6 250 37.6
CDE09G0524 Ceratophyllum demersum HOM05D005749 ORTHO05D007208 9.9e-27 125.2 176 42.6
CBR_g5606 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-25 121.7 187 36.9
SEGI_12651 Sequoiadendron giganteum HOM05D005749 ORTHO05D007208 4.2e-25 119.8 80 80.0
Lsat_1_v5_gn_1_79620 Lactuca sativa HOM05D005749 ORTHO05D007208 7.8e-24 115.5 90 67.8
Peaxi162Scf00146g01322 Petunia axillaris HOM05D005749 ORTHO05D007208 8.1e-13 79.0 111 45.0
Dinv03750 Davidia involucrata HOM05D005749 ORTHO05D007208 6.9e-12 75.9 41 92.7
Actinidia19728 Actinidia chinensis HOM05D005749 ORTHO05D007208 2.1e-08 64.3 73 53.4
Dinv06973 Davidia involucrata HOM05D005749 ORTHO05D007208 6.0e-08 62.8 36 80.6
MCO11G480 Micromonas commoda HOM05D005749 ORTHO05D007208 2.3e-07 60.8 242 23.1
CBR_g41620 Chara braunii HOM05D005749 ORTHO05D007208 1.5e-06 58.2 51 56.9


User provided reference genes

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