Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G3145 Fragaria x ananassa HOM05D005727 ORTHO05D007324 9.4e-133 476.9 241 100.0
FvH4_6g09890 Fragaria vesca HOM05D005727 ORTHO05D007324 4.8e-129 464.5 241 97.1
FAN05G4930 Fragaria x ananassa HOM05D005727 ORTHO05D007324 1.1e-128 463.4 241 97.1
FAN14G2915 Fragaria x ananassa HOM05D005727 ORTHO05D007324 2.0e-127 459.1 241 96.3
FAN05G2443 Fragaria x ananassa HOM05D005727 ORTHO05D007324 2.5e-125 452.2 259 90.3
RcHm_v2.0_Chr3g0460491 Rosa chinensis HOM05D005727 ORTHO05D007324 2.1e-124 449.1 241 92.9
FAN05G2146 Fragaria x ananassa HOM05D005727 ORTHO05D007324 2.7e-124 448.7 262 88.9
MD12G1188200 Malus domestica HOM05D005727 ORTHO05D007324 1.5e-109 399.8 240 84.2
Prupe.6G293500 Prunus persica HOM05D005727 ORTHO05D007324 4.3e-93 345.1 241 76.3
Nn2g10300 Nelumbo nucifera HOM05D005727 ORTHO05D007324 9.5e-93 344.0 218 77.5
Atru.chr8.117 Acer truncatum HOM05D005727 ORTHO05D007324 1.6e-92 343.2 241 73.4
TAR267G0001 Trochodendron aralioides HOM05D005727 ORTHO05D007324 3.6e-92 342.0 241 73.9
TAR636G3506 Trochodendron aralioides HOM05D005727 ORTHO05D007324 1.4e-91 340.1 241 73.4
CiPaw.09G221300 Carya illinoinensis HOM05D005727 ORTHO05D007324 2.3e-91 339.3 245 73.1
Aqoxy4G02424 Aquilegia oxysepala HOM05D005727 ORTHO05D007324 1.2e-90 337.0 242 71.1
Cpa.g.sc86.59 Carica papaya HOM05D005727 ORTHO05D007324 2.0e-90 336.3 243 72.8
Gohir.D09G215000 Gossypium hirsutum HOM05D005727 ORTHO05D007324 4.4e-90 335.1 241 72.2
Gorai.006G235400 Gossypium raimondii HOM05D005727 ORTHO05D007324 4.4e-90 335.1 241 72.2
Gohir.A09G213660 Gossypium hirsutum HOM05D005727 ORTHO05D007324 5.8e-90 334.7 241 72.2
QL07p032118 Quercus lobata HOM05D005727 ORTHO05D007324 1.7e-89 333.2 246 73.2
Thecc.04G151700 Theobroma cacao HOM05D005727 ORTHO05D007324 1.7e-89 333.2 240 71.7
Potri.016G136600 Populus trichocarpa HOM05D005727 ORTHO05D007324 4.9e-89 331.6 238 71.8
Cfa017035 Carpinus fangiana HOM05D005727 ORTHO05D007324 6.4e-89 331.3 244 70.5
Ciclev10012658m.g Citrus clementina HOM05D005727 ORTHO05D007324 1.1e-88 330.5 241 72.6
Haze_21174 Corylus avellana HOM05D005727 ORTHO05D007324 1.9e-88 329.7 244 70.1
Sabra04G0153300 Salix brachista HOM05D005727 ORTHO05D007324 1.6e-87 326.6 238 70.2
GSVIVG01030181001 Vitis vinifera HOM05D005727 ORTHO05D007324 2.7e-87 325.9 238 68.9
Glyma.09G275000 Glycine max HOM05D005727 ORTHO05D007324 3.5e-87 325.5 224 73.2
Cc06_g00400 Coffea canephora HOM05D005727 ORTHO05D007324 7.8e-87 324.3 241 70.5
Dinv16978 Davidia involucrata HOM05D005727 ORTHO05D007324 1.0e-86 323.9 241 70.5
Glyma.18G213900 Glycine max HOM05D005727 ORTHO05D007324 1.7e-86 323.2 223 74.4
VMungo1383G0728 Vigna mungo HOM05D005727 ORTHO05D007324 1.7e-86 323.2 223 73.5
Manes.08G171300 Manihot esculenta HOM05D005727 ORTHO05D007324 3.9e-86 322.0 245 69.4
Phvul.008G082900 Phaseolus vulgaris HOM05D005727 ORTHO05D007324 3.9e-86 322.0 241 71.0
arahy.Tifrunner.gnm1.ann1.FBM6UZ Arachis hypogaea HOM05D005727 ORTHO05D007324 8.6e-86 320.9 242 68.6
Lalb_Chr01g0023751 Lupinus albus HOM05D005727 ORTHO05D007324 8.6e-86 320.9 239 71.5
CANSAT35G1579 Cannabis sativa HOM05D005727 ORTHO05D007324 1.1e-85 320.5 244 65.6
CAN.G487.5 Capsicum annuum HOM05D005727 ORTHO05D007324 4.3e-85 318.5 218 73.4
CSS0016709 Camellia sinensis var. sinensis HOM05D005727 ORTHO05D007324 6.2e-84 314.7 240 69.2
Hund19761 Selenicereus undatus HOM05D005727 ORTHO05D007324 8.1e-84 314.3 222 70.3
Lj1g0000237 Lotus japonicus HOM05D005727 ORTHO05D007324 1.4e-83 313.5 241 68.0
Sopen10g027500 Solanum pennellii HOM05D005727 ORTHO05D007324 1.8e-83 313.2 218 72.0
Os11g0116400 Oryza sativa ssp. japonica HOM05D005727 ORTHO05D007324 2.3e-83 312.8 198 76.3
Solyc10g075020.3 Solanum lycopersicum HOM05D005727 ORTHO05D007324 2.3e-83 312.8 222 70.7
PGSC0003DMG400031234 Solanum tuberosum HOM05D005727 ORTHO05D007324 2.3e-83 312.8 218 72.0
Thhalv10014581m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 4.0e-83 312.0 237 67.1
Os12g0115900 Oryza sativa ssp. japonica HOM05D005727 ORTHO05D007324 4.0e-83 312.0 198 75.8
Actinidia20792 Actinidia chinensis HOM05D005727 ORTHO05D007324 5.2e-83 311.6 216 70.4
PGR031G0696 Punica granatum HOM05D005727 ORTHO05D007324 5.2e-83 311.6 219 70.8
AL3G19740 Arabidopsis lyrata HOM05D005727 ORTHO05D007324 8.9e-83 310.8 242 67.4
Medtr7g073250 Medicago truncatula HOM05D005727 ORTHO05D007324 8.9e-83 310.8 218 71.6
Psat3g118920 Pisum sativum HOM05D005727 ORTHO05D007324 8.9e-83 310.8 239 69.0
Sed0002775 Sechium edule HOM05D005727 ORTHO05D007324 8.9e-83 310.8 222 70.7
Carub.0003s0787 Capsella rubella HOM05D005727 ORTHO05D007324 1.2e-82 310.5 242 66.5
Ah.15g090030 Amaranthus hybridus HOM05D005727 ORTHO05D007324 1.5e-82 310.1 232 67.7
DCAR_023975 Daucus carota HOM05D005727 ORTHO05D007324 1.5e-82 310.1 218 71.6
Migut.J00039 Erythranthe guttata HOM05D005727 ORTHO05D007324 1.5e-82 310.1 220 69.5
Lsat_1_v5_gn_5_152381 Lactuca sativa HOM05D005727 ORTHO05D007324 2.0e-82 309.7 241 67.6
TPR.G14131 Trifolium pratense HOM05D005727 ORTHO05D007324 2.6e-82 309.3 221 70.6
arahy.Tifrunner.gnm1.ann1.CT9SCB Arachis hypogaea HOM05D005727 ORTHO05D007324 4.4e-82 308.5 250 65.6
ATR1127G235 Amborella trichopoda HOM05D005727 ORTHO05D007324 9.9e-82 307.4 190 77.9
HPP92_018087 Vanilla planifolia HOM05D005727 ORTHO05D007324 9.9e-82 307.4 226 69.0
AT3G08740 Arabidopsis thaliana HOM05D005727 ORTHO05D007324 1.3e-81 307.0 243 67.1
CARHR083040 Cardamine hirsuta HOM05D005727 ORTHO05D007324 1.3e-81 307.0 245 66.1
THA.LOC104823320 Tarenaya hassleriana HOM05D005727 ORTHO05D007324 1.7e-81 306.6 242 67.4
TWI53G1599 Tripterygium wilfordii HOM05D005727 ORTHO05D007324 2.2e-81 306.2 244 68.0
Oeu057982.1 Olea europaea HOM05D005727 ORTHO05D007324 3.7e-81 305.4 220 71.8
Sc02g0000150 Simmondsia chinensis HOM05D005727 ORTHO05D007324 3.7e-81 305.4 226 69.5
HanXRQChr11g0345321 Helianthus annuus HOM05D005727 ORTHO05D007324 4.9e-81 305.1 238 66.0
Sp3g07170 Schrenkiella parvula HOM05D005727 ORTHO05D007324 4.9e-81 305.1 242 66.9
CsaV3_3G033100 Cucumis sativus L. HOM05D005727 ORTHO05D007324 1.4e-80 303.5 240 66.2
ECA248G0208 Erigeron canadensis HOM05D005727 ORTHO05D007324 1.4e-80 303.5 217 69.6
MELO3C009104.2 Cucumis melo HOM05D005727 ORTHO05D007324 3.2e-80 302.4 226 66.8
BcaNung03307 Brassica carinata HOM05D005727 ORTHO05D007324 4.1e-80 302.0 242 65.7
A05p40060 Brassica napus HOM05D005727 ORTHO05D007324 5.4e-80 301.6 244 65.6
PSO017G0584 Papaver somniferum HOM05D005727 ORTHO05D007324 5.4e-80 301.6 245 64.1
SalBow8G0913 Salvia bowleyana HOM05D005727 ORTHO05D007324 5.4e-80 301.6 218 70.2
BcaC06g31951 Brassica carinata HOM05D005727 ORTHO05D007324 7.1e-80 301.2 190 75.3
CSS0006704 Camellia sinensis var. sinensis HOM05D005727 ORTHO05D007324 7.1e-80 301.2 216 70.8
C09p74740 Brassica napus HOM05D005727 ORTHO05D007324 9.2e-80 300.8 190 75.3
BcaC05g29610 Brassica carinata HOM05D005727 ORTHO05D007324 1.2e-79 300.4 244 65.2
C05p59120 Brassica napus HOM05D005727 ORTHO05D007324 1.2e-79 300.4 244 65.2
BolC3t14633H Brassica oleracea HOM05D005727 ORTHO05D007324 1.6e-79 300.1 190 74.7
BcaNung03303 Brassica carinata HOM05D005727 ORTHO05D007324 2.7e-79 299.3 190 74.7
BolC5t34584H Brassica oleracea HOM05D005727 ORTHO05D007324 2.7e-79 299.3 244 65.2
Eucgr.A00739 Eucalyptus grandis HOM05D005727 ORTHO05D007324 6.0e-79 298.1 240 65.4
A10p33800 Brassica napus HOM05D005727 ORTHO05D007324 7.8e-79 297.7 190 74.7
AUR62006416 Chenopodium quinoa HOM05D005727 ORTHO05D007324 1.7e-78 296.6 241 63.5
EL10Ac7g17100 Beta vulgaris HOM05D005727 ORTHO05D007324 2.3e-78 296.2 240 65.0
Nitab4.5_0010794g0010 Nicotiana tabacum HOM05D005727 ORTHO05D007324 2.3e-78 296.2 230 67.8
PSO170G4055 Papaver somniferum HOM05D005727 ORTHO05D007324 2.3e-78 296.2 244 63.9
Peaxi162Scf01238g00221 Petunia axillaris HOM05D005727 ORTHO05D007324 3.0e-78 295.8 248 63.3
SGA_v2.0_scaffold85G26613 Striga asiatica HOM05D005727 ORTHO05D007324 3.0e-78 295.8 222 68.5
BraA10t45408Z Brassica rapa HOM05D005727 ORTHO05D007324 5.1e-78 295.0 190 73.7
Sp6g41120 Schrenkiella parvula HOM05D005727 ORTHO05D007324 3.3e-77 292.4 244 62.7
Thhalv10023841m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 5.6e-77 291.6 250 62.8
Thhalv10022392m.g Eutrema salsugineum HOM05D005727 ORTHO05D007324 7.3e-77 291.2 200 69.5
HanXRQChr01g0000121 Helianthus annuus HOM05D005727 ORTHO05D007324 1.6e-76 290.0 219 65.3
Aa31LG5G18760 Aethionema arabicum HOM05D005727 ORTHO05D007324 3.1e-75 285.8 241 63.9
MSTRG.5500 Avicennia marina HOM05D005727 ORTHO05D007324 4.0e-75 285.4 241 61.8
Actinidia32567 Actinidia chinensis HOM05D005727 ORTHO05D007324 5.2e-75 285.0 198 69.7
AUR62029764 Chenopodium quinoa HOM05D005727 ORTHO05D007324 6.8e-75 284.6 253 59.7
SalBow1G7101 Salvia bowleyana HOM05D005727 ORTHO05D007324 8.9e-75 284.3 246 61.8
SalBow1G5580 Salvia bowleyana HOM05D005727 ORTHO05D007324 7.6e-74 281.2 201 70.1
AagrBONN_evm.TU.Sc2ySwM_228.1047 Anthoceros agrestis HOM05D005727 ORTHO05D007324 1.3e-73 280.4 190 71.1
COL.COLO4_06480 Corchorus olitorius HOM05D005727 ORTHO05D007324 2.3e-70 269.6 222 64.9
Pp3c23_18430 Physcomitrium patens HOM05D005727 ORTHO05D007324 2.3e-70 269.6 241 58.1
Lj3A941T101 Lonicera japonica HOM05D005727 ORTHO05D007324 1.1e-69 267.3 215 64.2
Aa31LG5G11490 Aethionema arabicum HOM05D005727 ORTHO05D007324 1.5e-69 266.9 201 67.2
BcaC01g05776 Brassica carinata HOM05D005727 ORTHO05D007324 1.9e-69 266.5 188 70.2
Duzib268G0979 Durio zibethinus HOM05D005727 ORTHO05D007324 1.9e-69 266.5 195 68.7
CBR_g46434 Chara braunii HOM05D005727 ORTHO05D007324 1.6e-68 263.5 190 63.7
SMO358G0605 Selaginella moellendorffii HOM05D005727 ORTHO05D007324 1.4e-67 260.4 185 63.8
vmacro08938 Vaccinium macrocarpon HOM05D005727 ORTHO05D007324 3.1e-67 259.2 309 49.5
SalBow5G2514 Salvia bowleyana HOM05D005727 ORTHO05D007324 1.3e-65 253.8 165 75.2
SGA_v2.0_scaffold85G26621 Striga asiatica HOM05D005727 ORTHO05D007324 2.9e-65 252.7 167 73.1
Rhsim04G0121700 Rhododendron simsii HOM05D005727 ORTHO05D007324 1.1e-61 240.7 364 41.5
unitig_578.g15912 Utricularia gibba HOM05D005727 ORTHO05D007324 7.4e-61 238.0 179 67.0
Mapoly0080s0087 Marchantia polymorpha HOM05D005727 ORTHO05D007324 1.3e-60 237.3 240 50.4
MD04G1174600 Malus domestica HOM05D005727 ORTHO05D007324 3.2e-56 222.6 142 76.1
MCO07G614 Micromonas commoda HOM05D005727 ORTHO05D007324 2.1e-55 219.9 184 55.4
Cre16.g691000 Chlamydomonas reinhardtii HOM05D005727 ORTHO05D007324 1.7e-49 200.3 184 52.7
CDE04G3002 Ceratophyllum demersum HOM05D005727 ORTHO05D007324 1.1e-43 181.0 138 69.6
SEGI_30349 Sequoiadendron giganteum HOM05D005727 ORTHO05D007324 6.5e-41 171.8 129 63.6
Sopen10g027490 Solanum pennellii HOM05D005727 ORTHO05D007324 5.7e-37 158.7 106 71.7
ClCG10G022720 Citrullus lanatus HOM05D005727 ORTHO05D007324 8.2e-36 154.8 106 67.9
Zm00001eb406060 Zea mays HOM05D005727 ORTHO05D007324 4.2e-24 115.9 62 82.3
PRCOL_00007056 Prasinoderma coloniale HOM05D005727 ORTHO05D007324 7.9e-23 111.7 168 37.5
ECA248G1985 Erigeron canadensis HOM05D007418 ORTHO05D009419 3.7e-20 102.8 218 31.7
Nn7g35872 Nelumbo nucifera HOM05D007418 ORTHO05D009419 6.3e-20 102.1 243 28.4
Aqoxy1G00469 Aquilegia oxysepala HOM05D002514 ORTHO05D002761 2.4e-19 100.1 233 27.5
Zm00001eb061520 Zea mays HOM05D007418 ORTHO05D009419 4.1e-19 99.4 225 28.9
Eucgr.J01769 Eucalyptus grandis HOM05D007418 ORTHO05D009419 9.1e-19 98.2 229 31.4
Pp3c1_29390 Physcomitrium patens HOM05D007418 ORTHO05D009419 2.6e-18 96.7 184 25.5
HanXRQChr01g0021361 Helianthus annuus HOM05D007418 ORTHO05D009419 3.5e-18 96.3 210 31.0
SalBow2G0815 Salvia bowleyana HOM05D007418 ORTHO05D009419 1.3e-17 94.4 190 31.1
SMO172G0180 Selaginella moellendorffii HOM05D007418 ORTHO05D009419 1.7e-17 94.0 190 25.3
Dinv13469 Davidia involucrata HOM05D007418 ORTHO05D009419 6.5e-17 92.0 246 28.0
PSO384G4713 Papaver somniferum HOM05D007418 ORTHO05D009419 1.1e-16 91.3 182 28.0
PSO339G6348 Papaver somniferum HOM05D007418 ORTHO05D009419 1.5e-16 90.9 182 28.0
CDE04G0740 Ceratophyllum demersum HOM05D005727 ORTHO05D007324 2.5e-16 90.1 64 68.8
AL7G26640 Arabidopsis lyrata HOM05D007418 ORTHO05D009419 3.2e-16 89.7 182 30.8
CARHR233880 Cardamine hirsuta HOM05D007418 ORTHO05D009419 4.2e-16 89.4 182 30.8
AT4G26310 Arabidopsis thaliana HOM05D007418 ORTHO05D009419 5.5e-16 89.0 182 30.8
MCO01G577 Micromonas commoda HOM05D005727 ORTHO05D009419 7.2e-16 88.6 185 25.9
CBR_g28818 Chara braunii HOM05D007418 ORTHO05D009419 1.2e-15 87.8 189 27.0
AagrBONN_evm.TU.Sc2ySwM_344.2531 Anthoceros agrestis HOM05D007418 ORTHO05D009419 1.6e-15 87.4 166 28.3
PGR119G2313 Punica granatum HOM05D007418 ORTHO05D009419 2.7e-15 86.7 229 29.7
Solyc01g044490.4 Solanum lycopersicum HOM05D007418 ORTHO05D009419 6.1e-15 85.5 231 27.3
Aa31LG11G8030 Aethionema arabicum HOM05D007418 ORTHO05D009419 8.0e-15 85.1 180 27.2
Sopen01g018620 Solanum pennellii HOM05D007418 ORTHO05D009419 1.0e-14 84.7 231 27.3
Carub.0007s1463 Capsella rubella HOM05D007418 ORTHO05D009419 1.8e-14 84.0 243 29.2
THA.LOC104817736 Tarenaya hassleriana HOM05D007418 ORTHO05D009419 2.3e-14 83.6 182 29.7
Ciclev10016443m.g Citrus clementina HOM05D007418 ORTHO05D009419 3.0e-14 83.2 239 29.3
Cc01_g00020 Coffea canephora HOM05D007418 ORTHO05D009419 8.8e-14 81.6 168 26.8
Cc01_g03260 Coffea canephora HOM05D007418 ORTHO05D009419 1.2e-13 81.3 168 26.8
Gorai.009G114600 Gossypium raimondii HOM05D007418 ORTHO05D009419 2.6e-13 80.1 183 28.4
Thhalv10021419m.g Eutrema salsugineum HOM05D007418 ORTHO05D009419 3.3e-13 79.7 182 28.0
Gohir.A05G110100 Gossypium hirsutum HOM05D007418 ORTHO05D009419 3.3e-13 79.7 183 28.4
COL.COLO4_22858 Corchorus olitorius HOM05D007418 ORTHO05D009419 4.4e-13 79.3 228 26.3
Duzib160G0534 Durio zibethinus HOM05D007418 ORTHO05D009419 4.4e-13 79.3 183 27.3
Potri.001G004300 Populus trichocarpa HOM05D007418 ORTHO05D009419 4.4e-13 79.3 198 27.3
Manes.05G202800 Manihot esculenta HOM05D007418 ORTHO05D009419 7.5e-13 78.6 237 27.8
Sp3g14020 Schrenkiella parvula HOM05D007418 ORTHO05D009419 9.7e-13 78.2 180 25.6
Actinidia16244 Actinidia chinensis HOM05D007418 ORTHO05D009419 1.3e-12 77.8 236 25.4
BolC5t33821H Brassica oleracea HOM05D007418 ORTHO05D009419 1.3e-12 77.8 182 27.5
BraA05t22194Z Brassica rapa HOM05D007418 ORTHO05D009419 1.3e-12 77.8 182 27.5
QL01p009000 Quercus lobata HOM05D007418 ORTHO05D009419 1.3e-12 77.8 249 28.1
HPP92_000821 Vanilla planifolia HOM05D007418 ORTHO05D009419 1.3e-12 77.8 167 28.1
Thecc.06G017000 Theobroma cacao HOM05D007418 ORTHO05D009419 1.1e-11 74.7 241 25.7
Lsat_1_v5_gn_1_67260 Lactuca sativa HOM05D007418 ORTHO05D009419 3.1e-11 73.2 158 32.3
MD11G1003800 Malus domestica HOM05D007418 ORTHO05D009419 5.3e-11 72.4 238 27.7
SEGI_29867 Sequoiadendron giganteum HOM05D005727 ORTHO05D007324 3.5e-10 69.7 38 78.9
Ciclev10010465m.g Citrus clementina HOM05D005727 ORTHO05D007324 1.7e-09 67.4 40 82.5
Sabra01G0003000 Salix brachista HOM05D007418 ORTHO05D009419 1.9e-08 63.9 195 25.1
Hma1.2p1_0062F.1_g034220 Hydrangea macrophylla HOM05D007418 ORTHO05D009419 4.2e-08 62.8 137 28.5
unitig_899.g15026 Utricularia gibba HOM05D007418 ORTHO05D009419 1.0e-06 58.2 153 26.8


User provided reference genes

Program Settings