Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G2042 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 2764.2 1374 100.0
FAN14G2782 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 2506.9 1443 88.8
FvH4_6g20450 Fragaria vesca HOM05D004363 ORTHO05D005110 0.0e+00 2413.3 1375 89.5
FAN05G3395 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 2154.0 1199 91.2
FAN05G1872 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 2093.2 1188 89.6
FAN02G1528 Fragaria x ananassa HOM05D004363 ORTHO05D005110 0.0e+00 2059.3 1177 89.0
Prupe.7G093600 Prunus persica HOM05D004363 ORTHO05D005110 0.0e+00 2022.7 1378 75.0
MD14G1040700 Malus domestica HOM05D004363 ORTHO05D005110 0.0e+00 1971.1 1388 72.9
MD12G1041600 Malus domestica HOM05D004363 ORTHO05D005110 0.0e+00 1958.3 1379 72.9
RcHm_v2.0_Chr3g0476301 Rosa chinensis HOM05D004363 ORTHO05D005110 0.0e+00 1924.1 1195 82.3
CiPaw.10G018600 Carya illinoinensis HOM05D004363 ORTHO05D005110 0.0e+00 1776.9 1384 65.8
Atru.chr8.1332 Acer truncatum HOM05D004363 ORTHO05D005110 0.0e+00 1750.7 1389 64.9
COL.COLO4_29546 Corchorus olitorius HOM05D004363 ORTHO05D005110 0.0e+00 1718.7 1388 63.7
Ciclev10010925m.g Citrus clementina HOM05D004363 ORTHO05D005110 0.0e+00 1700.6 1388 62.9
CANSAT64G2344 Cannabis sativa HOM05D004363 ORTHO05D005110 0.0e+00 1694.1 1381 63.4
Potri.016G068800 Populus trichocarpa HOM05D004363 ORTHO05D005110 0.0e+00 1686.8 1380 62.4
Duzib093G0100 Durio zibethinus HOM05D004363 ORTHO05D005110 0.0e+00 1686.4 1389 63.0
Duzib128G0297 Durio zibethinus HOM05D004363 ORTHO05D005110 0.0e+00 1671.0 1387 62.4
Sabra16G0069700 Salix brachista HOM05D004363 ORTHO05D005110 0.0e+00 1659.8 1392 61.7
Dinv31774 Davidia involucrata HOM05D004363 ORTHO05D005110 0.0e+00 1651.3 1390 61.9
Cfa020046 Carpinus fangiana HOM05D004363 ORTHO05D005110 0.0e+00 1650.2 1388 62.8
GSVIVG01022591001 Vitis vinifera HOM05D004363 ORTHO05D005110 0.0e+00 1634.8 1360 62.1
TAR628G0010 Trochodendron aralioides HOM05D004363 ORTHO05D005110 0.0e+00 1629.4 1405 60.9
CsaV3_3G038050 Cucumis sativus L. HOM05D004363 ORTHO05D005110 0.0e+00 1625.1 1382 60.8
TWI74G0412 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 0.0e+00 1619.0 1387 60.3
TAR169G0003 Trochodendron aralioides HOM05D004363 ORTHO05D005110 0.0e+00 1615.5 1404 60.7
ClCG10G018260 Citrullus lanatus HOM05D004363 ORTHO05D005110 0.0e+00 1613.2 1445 59.2
Sed0002127 Sechium edule HOM05D004363 ORTHO05D005110 0.0e+00 1607.0 1382 60.1
CSS0038425 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 0.0e+00 1601.3 1353 60.8
Gohir.A11G315700 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1600.1 1390 60.6
Glyma.03G202700 Glycine max HOM05D004363 ORTHO05D005110 0.0e+00 1598.2 1389 60.3
Gohir.D11G332900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1595.5 1389 60.3
Gorai.007G363900 Gossypium raimondii HOM05D004363 ORTHO05D005110 0.0e+00 1592.8 1390 60.3
Manes.08G034300 Manihot esculenta HOM05D004363 ORTHO05D005110 0.0e+00 1590.9 1330 62.5
TWI77G0878 Tripterygium wilfordii HOM05D004363 ORTHO05D005110 0.0e+00 1588.5 1423 58.5
Ca_09062_v3 Cicer arietinum L. HOM05D004363 ORTHO05D005110 0.0e+00 1588.2 1383 59.8
Psat0s3922g0040 Pisum sativum HOM05D004363 ORTHO05D005110 0.0e+00 1588.2 1385 59.8
Glyma.19G200400 Glycine max HOM05D004363 ORTHO05D005110 0.0e+00 1587.0 1388 60.2
Medtr7g106380 Medicago truncatula HOM05D004363 ORTHO05D005110 0.0e+00 1587.0 1388 59.6
TPR.G31289 Trifolium pratense HOM05D004363 ORTHO05D005110 0.0e+00 1574.3 1384 59.5
Lj1g0000064 Lotus japonicus HOM05D004363 ORTHO05D005110 0.0e+00 1572.0 1385 59.7
Oeu035643.1 Olea europaea HOM05D004363 ORTHO05D005110 0.0e+00 1572.0 1383 59.2
Lalb_Chr01g0017831 Lupinus albus HOM05D004363 ORTHO05D005110 0.0e+00 1560.0 1386 59.5
VMungo1383G2497 Vigna mungo HOM05D004363 ORTHO05D005110 0.0e+00 1556.6 1388 59.1
Eucgr.A02575 Eucalyptus grandis HOM05D004363 ORTHO05D005110 0.0e+00 1553.5 1389 58.1
PGR004G0690 Punica granatum HOM05D004363 ORTHO05D005110 0.0e+00 1553.5 1389 57.8
arahy.Tifrunner.gnm1.ann1.KT4HPP Arachis hypogaea HOM05D004363 ORTHO05D005110 0.0e+00 1553.1 1388 59.1
arahy.Tifrunner.gnm1.ann1.D60SL5 Arachis hypogaea HOM05D004363 ORTHO05D005110 0.0e+00 1551.6 1401 58.7
Thecc.05G106200 Theobroma cacao HOM05D004363 ORTHO05D005110 0.0e+00 1551.6 1281 62.8
Gorai.009G393900 Gossypium raimondii HOM05D004363 ORTHO05D005110 0.0e+00 1550.0 1409 59.5
Phvul.001G196200 Phaseolus vulgaris HOM05D004363 ORTHO05D005110 0.0e+00 1549.6 1388 58.7
vmacro07483 Vaccinium macrocarpon HOM05D004363 ORTHO05D005110 0.0e+00 1543.1 1383 57.8
THA.LOC104820934 Tarenaya hassleriana HOM05D004363 ORTHO05D005110 0.0e+00 1531.5 1386 57.5
QL07p036386 Quercus lobata HOM05D004363 ORTHO05D005110 0.0e+00 1503.8 1199 65.1
Nn6g34649 Nelumbo nucifera HOM05D004363 ORTHO05D005110 0.0e+00 1500.7 1409 57.3
Migut.J00693 Erythranthe guttata HOM05D004363 ORTHO05D005110 0.0e+00 1481.1 1389 57.1
AT5G16280 Arabidopsis thaliana HOM05D004363 ORTHO05D005110 0.0e+00 1479.5 1383 56.3
AL6G27170 Arabidopsis lyrata HOM05D004363 ORTHO05D005110 0.0e+00 1477.6 1383 56.3
Aqoxy1G00638 Aquilegia oxysepala HOM05D004363 ORTHO05D005110 0.0e+00 1473.8 1397 56.3
CAN.G911.40 Capsicum annuum HOM05D004363 ORTHO05D005110 0.0e+00 1472.2 1379 56.4
MSTRG.19302 Avicennia marina HOM05D004363 ORTHO05D005110 0.0e+00 1466.8 1387 56.0
Solyc01g006960.3 Solanum lycopersicum HOM05D004363 ORTHO05D005110 0.0e+00 1464.1 1379 56.3
Sopen01g002950 Solanum pennellii HOM05D004363 ORTHO05D005110 0.0e+00 1459.1 1379 56.3
Sp6g27880 Schrenkiella parvula HOM05D004363 ORTHO05D005110 0.0e+00 1457.2 1386 55.4
Carub.0006s1447 Capsella rubella HOM05D004363 ORTHO05D005110 0.0e+00 1451.4 1382 55.4
BolC9t58910H Brassica oleracea HOM05D004363 ORTHO05D005110 0.0e+00 1449.5 1382 55.4
C03p08890 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1447.6 1380 55.1
BolC3t13384H Brassica oleracea HOM05D004363 ORTHO05D005110 0.0e+00 1447.6 1381 55.1
BraA03t10093Z Brassica rapa HOM05D004363 ORTHO05D005110 0.0e+00 1447.6 1382 55.3
BraA10t44344Z Brassica rapa HOM05D004363 ORTHO05D005110 0.0e+00 1447.6 1381 55.3
PSO339G1158 Papaver somniferum HOM05D004363 ORTHO05D005110 0.0e+00 1446.4 1390 54.7
MSTRG.5891 Avicennia marina HOM05D004363 ORTHO05D005110 0.0e+00 1445.6 1385 54.9
A10p22780 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1444.9 1381 55.2
A03p07650 Brassica napus HOM05D004363 ORTHO05D005110 0.0e+00 1444.1 1382 55.1
EL10Ac5g11738 Beta vulgaris HOM05D004363 ORTHO05D005110 0.0e+00 1443.7 1401 54.8
Sc01g0005470 Simmondsia chinensis HOM05D004363 ORTHO05D005110 0.0e+00 1442.6 1388 56.2
DCAR_020694 Daucus carota HOM05D004363 ORTHO05D005110 0.0e+00 1437.6 1446 53.4
PSO384G4461 Papaver somniferum HOM05D004363 ORTHO05D005110 0.0e+00 1437.2 1391 54.9
Aa31LG11G13340 Aethionema arabicum HOM05D004363 ORTHO05D005110 0.0e+00 1435.6 1403 53.5
AUR62041186 Chenopodium quinoa HOM05D004363 ORTHO05D005110 0.0e+00 1431.0 1389 54.5
Thhalv10012466m.g Eutrema salsugineum HOM05D004363 ORTHO05D005110 0.0e+00 1427.5 1380 54.9
ECA233G0072 Erigeron canadensis HOM05D004363 ORTHO05D005110 0.0e+00 1424.1 1382 54.5
MELO3C009547.2 Cucumis melo HOM05D004363 ORTHO05D005110 0.0e+00 1419.1 1489 53.1
HanXRQChr02g0053261 Helianthus annuus HOM05D004363 ORTHO05D005110 0.0e+00 1396.7 1377 54.0
Rhsim11G0045000 Rhododendron simsii HOM05D004363 ORTHO05D005110 0.0e+00 1391.3 1242 58.3
Lalb_Chr25g0287961 Lupinus albus HOM05D004363 ORTHO05D005110 0.0e+00 1382.5 1384 54.2
BcaB01g04994 Brassica carinata HOM05D004363 ORTHO05D005110 0.0e+00 1378.6 1377 53.8
Dinv12347 Davidia involucrata HOM05D004363 ORTHO05D005110 0.0e+00 1361.7 1167 61.0
AUR62030686 Chenopodium quinoa HOM05D004363 ORTHO05D005110 0.0e+00 1343.9 1386 52.5
Lsat_1_v5_gn_6_33820 Lactuca sativa HOM05D004363 ORTHO05D005110 0.0e+00 1343.2 1381 52.7
Cc06_g06670 Coffea canephora HOM05D004363 ORTHO05D005110 0.0e+00 1337.0 1208 56.8
Gohir.D04G092000 Gossypium hirsutum HOM05D004363 ORTHO05D005110 0.0e+00 1325.5 1117 62.1
BcaNung06113 Brassica carinata HOM05D004363 ORTHO05D005110 0.0e+00 1323.5 1382 52.1
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 0.0e+00 1315.8 1369 51.3
Hund10860 Selenicereus undatus HOM05D004363 ORTHO05D005110 0.0e+00 1311.2 1394 51.4
ATR0772G191 Amborella trichopoda HOM05D004363 ORTHO05D005110 0.0e+00 1277.7 1419 49.6
Zm00001eb060010 Zea mays HOM05D004363 ORTHO05D005110 0.0e+00 1259.2 1388 48.7
Peaxi162Scf00582g00064 Petunia axillaris HOM05D004363 ORTHO05D005110 0.0e+00 1246.5 1296 52.9
HPP92_013952 Vanilla planifolia HOM05D004363 ORTHO05D005110 0.0e+00 1244.2 1351 48.9
Os03g0786900 Oryza sativa ssp. japonica HOM05D004363 ORTHO05D005110 0.0e+00 1219.1 1373 48.7
CDE11G0453 Ceratophyllum demersum HOM05D004363 ORTHO05D005110 0.0e+00 1171.0 1403 46.5
SEGI_03324 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 0.0e+00 1099.0 1487 43.5
Nitab4.5_0001177g0040 Nicotiana tabacum HOM05D004363 ORTHO05D005110 3.9e-276 955.7 961 54.2
Ah.07g203620 Amaranthus hybridus HOM05D004363 ORTHO05D005110 5.5e-270 935.3 888 55.5
Pp3c6_8810 Physcomitrium patens HOM05D004363 ORTHO05D005110 5.5e-270 935.3 1449 39.4
CARHR197030 Cardamine hirsuta HOM05D004363 ORTHO05D005110 5.5e-254 882.1 728 60.4
Gohir.A04G054800 Gossypium hirsutum HOM05D004363 ORTHO05D005110 1.1e-249 867.8 786 59.4
AagrBONN_evm.TU.Sc2ySwM_228.1566 Anthoceros agrestis HOM05D004363 ORTHO05D005110 9.5e-246 854.7 1267 40.0
Mapoly0053s0062 Marchantia polymorpha HOM05D004363 ORTHO05D005110 1.0e-244 851.3 1461 36.8
SMO196G0050 Selaginella moellendorffii HOM05D004363 ORTHO05D005110 4.8e-189 666.4 1011 39.9
TAR623G0254 Trochodendron aralioides HOM05D004363 ORTHO05D005110 6.2e-189 666.0 579 60.4
unitig_578.g15812 Utricularia gibba HOM05D004363 ORTHO05D005110 6.4e-186 656.0 1379 33.6
Nitab4.5_0001191g0010 Nicotiana tabacum HOM05D004363 ORTHO05D005110 4.6e-168 596.7 669 51.0
Cpa.g.sc104.18 Carica papaya HOM05D004363 ORTHO05D005110 2.1e-152 544.7 430 64.0
Cpa.g.sc104.13 Carica papaya HOM05D004363 ORTHO05D005110 8.0e-144 516.2 465 59.8
Haze_20158 Corylus avellana HOM05D004363 ORTHO05D005110 3.4e-142 510.8 556 51.3
Lj1A1055T62 Lonicera japonica HOM05D004363 ORTHO05D005110 5.9e-139 500.0 378 65.1
Cpa.g.sc104.16 Carica papaya HOM05D004363 ORTHO05D005110 1.0e-119 436.0 349 64.5
Haze_20157 Corylus avellana HOM05D004363 ORTHO05D005110 2.4e-95 355.1 251 68.5
Gohir.A04G054750 Gossypium hirsutum HOM05D004363 ORTHO05D005110 3.2e-92 344.7 208 79.8
Cre01.g024400 Chlamydomonas reinhardtii HOM05D004363 ORTHO05D005110 4.2e-92 344.4 1155 26.6
Gohir.D04G091900 Gossypium hirsutum HOM05D004363 ORTHO05D005110 9.3e-92 343.2 208 78.8
Actinidia03984 Actinidia chinensis HOM05D004363 ORTHO05D005110 2.4e-87 328.6 485 42.1
Lj1C1055T8 Lonicera japonica HOM05D004363 ORTHO05D005110 9.0e-87 326.6 204 76.5
Actinidia03876 Actinidia chinensis HOM05D004363 ORTHO05D005110 4.9e-85 320.9 429 45.5
Hma1.2p1_0064F.1_g034600 Hydrangea macrophylla HOM05D004363 ORTHO05D005110 2.2e-77 295.4 294 54.4
PRCOL_00001893 Prasinoderma coloniale HOM05D004363 ORTHO05D005110 2.7e-75 288.5 1127 25.4
RcHm_v2.0_Chr3g0476311 Rosa chinensis HOM05D004363 ORTHO05D005110 9.6e-65 253.4 147 87.1
CSS0042424 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 4.5e-62 244.6 192 59.9
SEGI_33831 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 9.7e-57 226.9 218 50.5
CSS0011588 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 6.3e-56 224.2 173 59.5
MCO09G191 Micromonas commoda HOM05D004363 ORTHO05D005110 3.8e-53 214.9 1029 24.3
CBR_g74641 Chara braunii HOM05D004363 ORTHO05D005110 1.4e-52 213.0 721 26.9
Nn3g20229 Nelumbo nucifera HOM05D004363 ORTHO05D005110 2.0e-49 202.6 174 60.3
Ah.07g203610 Amaranthus hybridus HOM05D004363 ORTHO05D005110 1.8e-47 196.1 220 46.4
Actinidia03879 Actinidia chinensis HOM05D004363 ORTHO05D005110 7.2e-44 184.1 143 65.0
Actinidia03986 Actinidia chinensis HOM05D004363 ORTHO05D005110 2.5e-36 159.1 131 58.0
CSS0037163 Camellia sinensis var. sinensis HOM05D004363 ORTHO05D005110 1.2e-35 156.8 110 69.1
SEGI_22432 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 2.1e-35 156.0 215 41.4
Rhsim11G0045100 Rhododendron simsii HOM05D004363 ORTHO05D005110 3.6e-35 155.2 147 56.5
C09p60760 Brassica napus HOM05D004363 ORTHO05D005110 4.7e-35 154.8 119 66.4
SHI08960 Sapria himalayana HOM05D004363 ORTHO05D005110 1.0e-34 153.7 217 40.6
SEGI_10491 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 1.3e-32 146.7 117 54.7
SEGI_28545 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 1.3e-32 146.7 114 61.4
SHI08956 Sapria himalayana HOM05D004363 ORTHO05D005110 2.0e-30 139.4 112 63.4
SHI08961 Sapria himalayana HOM05D004363 ORTHO05D005110 1.2e-27 130.2 392 28.1
Ah.07g203630 Amaranthus hybridus HOM05D004363 ORTHO05D005110 6.3e-24 117.9 204 35.3
SEGI_19509 Sequoiadendron giganteum HOM05D004363 ORTHO05D005110 3.5e-22 112.1 86 61.6
Actinidia03877 Actinidia chinensis HOM05D004363 ORTHO05D005110 4.5e-22 111.7 94 59.6
SHI08962 Sapria himalayana HOM05D004363 ORTHO05D005110 2.2e-21 109.4 205 34.6
SHI08951 Sapria himalayana HOM05D004363 ORTHO05D005110 2.9e-21 109.0 83 65.1
arahy.Tifrunner.gnm1.ann1.BA6WS2 Arachis hypogaea HOM05D004363 ORTHO05D005110 1.4e-18 100.1 75 58.7
SHI08954 Sapria himalayana HOM05D004363 ORTHO05D005110 2.4e-15 89.4 69 55.1
arahy.Tifrunner.gnm1.ann1.P34FZA Arachis hypogaea HOM05D004363 ORTHO05D005110 2.3e-13 82.8 57 61.4
ATR0820G261 Amborella trichopoda HOM05D004363 ORTHO05D005110 8.6e-13 80.9 201 31.8
Lsat_1_v5_gn_8_81001 Lactuca sativa HOM05D004363 ORTHO05D005110 8.0e-11 74.3 85 48.2
Lsat_1_v5_gn_8_3860 Lactuca sativa HOM05D004363 ORTHO05D005110 5.2e-10 71.6 174 32.8
Lsat_1_v5_gn_3_22681 Lactuca sativa HOM05D004363 ORTHO05D005110 6.4e-08 64.7 49 65.3
CAN.G526.3 Capsicum annuum HOM05D004363 ORTHO05D005110 8.3e-08 64.3 76 44.7
Lsat_1_v5_gn_5_177961 Lactuca sativa HOM05D004363 ORTHO05D005110 8.3e-08 64.3 136 33.8
arahy.Tifrunner.gnm1.ann1.5GE6FN Arachis hypogaea HOM05D000323 ORTHO05D000201 1.8e-07 63.2 41 65.9
Lalb_Chr02g0153261 Lupinus albus HOM05D004363 ORTHO05D005110 5.4e-07 61.6 58 55.2
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 7.0e-07 61.2 58 51.7
Glyma.19G199100 Glycine max HOM05D003781 ORTHO05D004299 3.5e-06 58.9 40 67.5


User provided reference genes

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