Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G0887 Fragaria x ananassa HOM05D005899 ORTHO05D007445 8.6e-151 537.0 272 100.0
FvH4_6g03430 Fragaria vesca HOM05D005899 ORTHO05D007445 1.3e-119 433.3 304 76.0
FAN02G1821 Fragaria x ananassa HOM05D005899 ORTHO05D007445 1.9e-118 429.5 305 77.4
FAN14G1139 Fragaria x ananassa HOM05D005899 ORTHO05D007445 5.9e-115 417.9 312 72.8
RcHm_v2.0_Chr3g0451931 Rosa chinensis HOM05D005899 ORTHO05D007445 1.6e-112 409.8 305 70.8
FAN05G2237 Fragaria x ananassa HOM05D005899 ORTHO05D007445 2.7e-112 409.1 305 73.4
Prupe.6G339900 Prunus persica HOM05D005899 ORTHO05D007445 4.3e-102 375.2 303 64.4
MD12G1237200 Malus domestica HOM05D005899 ORTHO05D007445 1.4e-100 370.2 300 64.0
Cfa006459 Carpinus fangiana HOM05D005899 ORTHO05D007445 2.4e-100 369.4 303 64.4
QL03p024530 Quercus lobata HOM05D005899 ORTHO05D007445 9.1e-100 367.5 312 62.8
CiPaw.07G006200 Carya illinoinensis HOM05D005899 ORTHO05D007445 5.0e-98 361.7 311 61.7
Ciclev10001942m.g Citrus clementina HOM05D005899 ORTHO05D007445 2.2e-93 346.3 299 61.5
Duzib177G0382 Durio zibethinus HOM05D005899 ORTHO05D007445 3.7e-93 345.5 304 59.5
Gohir.A11G255200 Gossypium hirsutum HOM05D005899 ORTHO05D007445 3.7e-93 345.5 303 58.4
Gorai.007G285000 Gossypium raimondii HOM05D005899 ORTHO05D007445 8.2e-93 344.4 303 58.1
Ciclev10001941m.g Citrus clementina HOM05D005899 ORTHO05D007445 1.8e-92 343.2 299 61.9
Manes.09G155900 Manihot esculenta HOM05D005899 ORTHO05D007445 4.1e-92 342.0 307 59.0
Gohir.D11G264900 Gossypium hirsutum HOM05D005899 ORTHO05D007445 5.3e-92 341.7 303 58.1
arahy.Tifrunner.gnm1.ann1.41KAT0 Arachis hypogaea HOM05D005899 ORTHO05D007445 2.0e-91 339.7 305 59.3
Sabra15G0041400 Salix brachista HOM05D005899 ORTHO05D007445 5.9e-91 338.2 284 62.3
Thecc.05G288500 Theobroma cacao HOM05D005899 ORTHO05D007445 1.7e-90 336.7 310 56.8
Duzib128G1862 Durio zibethinus HOM05D005899 ORTHO05D007445 2.9e-90 335.9 310 57.7
CANSAT54G2589 Cannabis sativa HOM05D005899 ORTHO05D007445 8.5e-90 334.3 307 57.3
Glyma.19G243000 Glycine max HOM05D005899 ORTHO05D007445 1.6e-88 330.1 294 58.5
Medtr7g114750 Medicago truncatula HOM05D005899 ORTHO05D007445 2.7e-88 329.3 297 57.6
Potri.005G050600 Populus trichocarpa HOM05D005899 ORTHO05D007445 2.7e-88 329.3 309 57.3
CSS0047717 Camellia sinensis var. sinensis HOM05D005899 ORTHO05D007445 1.0e-87 327.4 295 56.9
TPR.G6971 Trifolium pratense HOM05D005899 ORTHO05D007445 1.4e-87 327.0 293 58.7
VMungo0540G1799 Vigna mungo HOM05D005899 ORTHO05D007445 1.4e-87 327.0 294 58.5
Sabra15G0068500 Salix brachista HOM05D005899 ORTHO05D007445 5.2e-87 325.1 318 55.3
Sed0018425 Sechium edule HOM05D005899 ORTHO05D007445 8.8e-87 324.3 297 58.9
TWI56G0091 Tripterygium wilfordii HOM05D005899 ORTHO05D007445 8.8e-87 324.3 312 56.1
Lalb_Chr15g0076871 Lupinus albus HOM05D005899 ORTHO05D007445 2.0e-86 323.2 309 56.0
Dinv11553 Davidia involucrata HOM05D005899 ORTHO05D007445 3.3e-86 322.4 298 57.0
Phvul.006G099800 Phaseolus vulgaris HOM05D005899 ORTHO05D007445 7.5e-86 321.2 294 57.1
PGR083G2155 Punica granatum HOM05D005899 ORTHO05D007445 1.3e-85 320.5 301 57.1
Actinidia05763 Actinidia chinensis HOM05D005899 ORTHO05D007445 3.7e-85 318.9 307 55.0
Psat0s62g0080 Pisum sativum HOM05D005899 ORTHO05D007445 4.8e-85 318.5 294 56.1
Lj1g0012490 Lotus japonicus HOM05D005899 ORTHO05D007445 2.4e-84 316.2 291 57.4
Ca_09408_v3 Cicer arietinum L. HOM05D005899 ORTHO05D007445 7.0e-84 314.7 296 56.8
DCAR_006615 Daucus carota HOM05D005899 ORTHO05D007445 9.1e-84 314.3 301 55.1
Eucgr.L01763 Eucalyptus grandis HOM05D005899 ORTHO05D007445 1.6e-83 313.5 298 57.7
Rhsim07G0131800 Rhododendron simsii HOM05D005899 ORTHO05D007445 1.6e-83 313.5 316 55.1
TAR362G0589 Trochodendron aralioides HOM05D005899 ORTHO05D007445 2.0e-83 313.2 295 54.9
vmacro14199 Vaccinium macrocarpon HOM05D005899 ORTHO05D007445 2.0e-83 313.2 317 55.5
Lj7P487T33 Lonicera japonica HOM05D005899 ORTHO05D007445 4.5e-83 312.0 295 56.3
BraA05t22981Z Brassica rapa HOM05D005899 ORTHO05D007445 1.3e-82 310.5 311 54.3
A05p42720 Brassica napus HOM05D005899 ORTHO05D007445 5.0e-82 308.5 311 54.0
C05p62440 Brassica napus HOM05D005899 ORTHO05D007445 6.5e-82 308.1 311 53.4
BcaB03g11648 Brassica carinata HOM05D005899 ORTHO05D007445 1.9e-81 306.6 305 54.1
QL03p024564 Quercus lobata HOM05D005899 ORTHO05D007445 1.9e-81 306.6 313 56.9
CARHR079150 Cardamine hirsuta HOM05D005899 ORTHO05D007445 4.2e-81 305.4 313 54.3
SHI18352 Sapria himalayana HOM05D005899 ORTHO05D007445 4.2e-81 305.4 313 54.3
BolC5t34897H Brassica oleracea HOM05D005899 ORTHO05D007445 5.5e-81 305.1 311 52.4
AT3G04880 Arabidopsis thaliana HOM05D005899 ORTHO05D007445 1.2e-80 303.9 302 53.6
Aa31LG5G15270 Aethionema arabicum HOM05D005899 ORTHO05D007445 2.7e-80 302.8 301 53.5
Atru.chr2.732 Acer truncatum HOM05D005899 ORTHO05D007445 8.0e-80 301.2 221 70.1
Atru.chr2.742 Acer truncatum HOM05D005899 ORTHO05D007445 8.0e-80 301.2 221 70.1
Atru.chr2.745 Acer truncatum HOM05D005899 ORTHO05D007445 8.0e-80 301.2 221 70.1
PSO761G0524 Papaver somniferum HOM05D005899 ORTHO05D007445 8.0e-80 301.2 295 53.9
Cpa.g.sc117.66 Carica papaya HOM05D005899 ORTHO05D007445 1.0e-79 300.8 306 53.9
THA.LOC104802822 Tarenaya hassleriana HOM05D005899 ORTHO05D007445 1.0e-79 300.8 299 53.5
Migut.N00303 Erythranthe guttata HOM05D005899 ORTHO05D007445 2.3e-79 299.7 310 53.5
PGSC0003DMG400022509 Solanum tuberosum HOM05D005899 ORTHO05D007445 4.0e-79 298.9 298 54.0
ECA233G4289 Erigeron canadensis HOM05D005899 ORTHO05D007445 8.8e-79 297.7 297 51.9
Solyc01g097800.3 Solanum lycopersicum HOM05D005899 ORTHO05D007445 2.0e-78 296.6 300 53.3
MBI01_g13083_MAGBIO Magnolia biondii HOM05D005899 ORTHO05D007445 5.7e-78 295.0 296 52.0
Oeu064565.1 Olea europaea HOM05D005899 ORTHO05D007445 5.7e-78 295.0 306 52.3
Nn4g26305 Nelumbo nucifera HOM05D005899 ORTHO05D007445 1.3e-77 293.9 210 68.1
SGA_v2.0_scaffold517G52669 Striga asiatica HOM05D005899 ORTHO05D007445 1.7e-77 293.5 292 53.8
ATR0681G168 Amborella trichopoda HOM05D005899 ORTHO05D007445 1.1e-76 290.8 293 52.6
HanXRQChr02g0057281 Helianthus annuus HOM05D005899 ORTHO05D007445 1.4e-76 290.4 293 52.6
Nitab4.5_0002361g0040 Nicotiana tabacum HOM05D005899 ORTHO05D007445 1.8e-76 290.0 305 51.1
Sopen01g041400 Solanum pennellii HOM05D005899 ORTHO05D007445 5.4e-76 288.5 299 53.2
Cc02_g31760 Coffea canephora HOM05D005899 ORTHO05D007445 1.2e-75 287.3 301 51.2
CDE05G2514 Ceratophyllum demersum HOM05D005899 ORTHO05D007445 2.0e-75 286.6 289 51.2
Lsat_1_v5_gn_6_53000 Lactuca sativa HOM05D005899 ORTHO05D007445 2.7e-75 286.2 301 51.8
AUR62000983 Chenopodium quinoa HOM05D005899 ORTHO05D007445 7.7e-75 284.6 305 51.1
EL10Ac4g09173 Beta vulgaris HOM05D005899 ORTHO05D007445 5.0e-74 282.0 310 50.0
Cfa006460 Carpinus fangiana HOM05D005899 ORTHO05D007445 8.5e-74 281.2 303 53.5
Oeu044665.1 Olea europaea HOM05D005899 ORTHO05D007445 5.5e-73 278.5 304 50.3
HPP92_023141 Vanilla planifolia HOM05D005899 ORTHO05D007445 7.2e-73 278.1 297 51.5
Sc13g0006240 Simmondsia chinensis HOM05D005899 ORTHO05D007445 9.4e-73 277.7 301 49.8
Sp3g03700 Schrenkiella parvula HOM05D005899 ORTHO05D007445 6.1e-72 275.0 310 49.4
Actinidia36917 Actinidia chinensis HOM05D005899 ORTHO05D007445 4.0e-71 272.3 211 64.5
SEGI_33796 Sequoiadendron giganteum HOM05D005899 ORTHO05D007445 6.6e-66 255.0 290 46.2
Os01g0542000 Oryza sativa ssp. japonica HOM05D005899 ORTHO05D007445 9.8e-62 241.1 305 44.9
TPR.G8897 Trifolium pratense HOM05D005899 ORTHO05D007445 3.7e-61 239.2 262 50.8
CAN.G134.162 Capsicum annuum HOM05D005899 ORTHO05D007445 1.1e-60 237.7 302 46.0
unitig_744.g24569 Utricularia gibba HOM05D005899 ORTHO05D007445 1.2e-59 234.2 185 64.9
Zm00001eb162780 Zea mays HOM05D005899 ORTHO05D007445 1.2e-59 234.2 302 43.4
SMO367G0143 Selaginella moellendorffii HOM05D005899 ORTHO05D007445 1.5e-57 227.3 298 42.6
Haze_04330 Corylus avellana HOM05D005899 ORTHO05D007445 1.2e-56 224.2 274 48.9
Medtr8g098320 Medicago truncatula HOM05D005899 ORTHO05D007445 4.0e-55 219.2 161 69.6
BcaNung06538 Brassica carinata HOM05D005899 ORTHO05D007445 5.2e-55 218.8 172 65.1
AL3G15170 Arabidopsis lyrata HOM05D005899 ORTHO05D007445 1.5e-54 217.2 229 49.3
Medtr7g114730 Medicago truncatula HOM05D005899 ORTHO05D007445 4.9e-53 212.2 245 49.8
FAN05G4109 Fragaria x ananassa HOM05D005899 ORTHO05D007445 3.2e-52 209.5 145 82.8
AUR62004976 Chenopodium quinoa HOM05D005899 ORTHO05D007445 2.3e-50 203.4 172 62.2
AUR62004985 Chenopodium quinoa HOM05D005899 ORTHO05D007445 1.4e-47 194.1 213 51.2
Pp3c6_4500 Physcomitrium patens HOM05D005899 ORTHO05D007445 1.8e-47 193.7 413 31.0
Eucgr.B01712 Eucalyptus grandis HOM05D005899 ORTHO05D007445 1.2e-46 191.0 302 43.7
Eucgr.L02186 Eucalyptus grandis HOM05D005899 ORTHO05D007445 1.6e-43 180.6 307 39.1
Eucgr.L02099 Eucalyptus grandis HOM05D005899 ORTHO05D007445 2.1e-43 180.3 136 65.4
Peaxi162Scf00404g00009 Petunia axillaris HOM05D005899 ORTHO05D007445 1.7e-42 177.2 205 47.3
TPR.G21843 Trifolium pratense HOM05D005899 ORTHO05D007445 1.4e-39 167.5 117 75.2
Eucgr.B01710 Eucalyptus grandis HOM05D005899 ORTHO05D007445 5.2e-39 165.6 270 43.7
RcHm_v2.0_Chr7g0217791 Rosa chinensis HOM05D005899 ORTHO05D007445 2.8e-32 143.3 140 57.9
Carub.0003s0408 Capsella rubella HOM05D005899 ORTHO05D007445 4.0e-31 139.4 112 67.9
Nitab4.5_0013433g0050 Nicotiana tabacum HOM05D005899 ORTHO05D007445 1.5e-30 137.5 191 39.3
Ah.04g162380 Amaranthus hybridus HOM05D005899 ORTHO05D007445 1.2e-22 111.3 165 37.0
AUR62000980 Chenopodium quinoa HOM05D005899 ORTHO05D007445 1.2e-22 111.3 97 62.9
TAR140G0002 Trochodendron aralioides HOM05D005899 ORTHO05D007445 9.3e-20 101.7 98 51.0
TAR623G1042 Trochodendron aralioides HOM05D005899 ORTHO05D007445 9.3e-20 101.7 98 51.0
PRCOL_00001982 Prasinoderma coloniale HOM05D005899 ORTHO05D007445 3.5e-19 99.8 174 37.4
TAR375G0990 Trochodendron aralioides HOM05D005899 ORTHO05D007445 7.9e-19 98.6 99 49.5
Sabra15G0057000 Salix brachista HOM05D005899 ORTHO05D007445 1.0e-18 98.2 150 38.7
Sabra15G0068600 Salix brachista HOM05D005899 ORTHO05D007445 1.0e-18 98.2 150 38.7
Sabra15G0056900 Salix brachista HOM05D005899 ORTHO05D007445 2.3e-18 97.1 130 40.0
TAR636G1090 Trochodendron aralioides HOM05D005899 ORTHO05D007445 2.3e-18 97.1 98 46.9
Carub.0003s0407 Capsella rubella HOM05D005899 ORTHO05D007445 2.5e-17 93.6 126 39.7
FAN05G4786 Fragaria x ananassa HOM05D005899 ORTHO05D007445 7.4e-17 92.0 46 91.3
TAR625G0400 Trochodendron aralioides HOM05D005899 ORTHO05D007445 2.8e-16 90.1 87 50.6
Dinv12477 Davidia involucrata HOM05D005899 ORTHO05D007445 3.1e-15 86.7 139 36.7
FAN06G4129 Fragaria x ananassa HOM05D005899 ORTHO05D045384 4.3e-09 66.2 67 52.2
FvH4_7g17710 Fragaria vesca HOM05D005899 ORTHO05D045384 5.6e-09 65.9 56 58.9
SGA_v2.0_scaffold31G12627 Striga asiatica HOM05D005899 ORTHO05D007445 7.4e-09 65.5 127 33.1
Cfa006462 Carpinus fangiana HOM05D005899 ORTHO05D007445 9.6e-09 65.1 128 33.6
FAN19G2556 Fragaria x ananassa HOM05D010020 ORTHO05D015123 1.4e-07 61.2 163 33.7
TAR375G0306 Trochodendron aralioides HOM05D005899 ORTHO05D007445 4.5e-06 56.2 52 53.8
FvH4_1g21970 Fragaria vesca HOM05D010020 ORTHO05D015123 5.8e-06 55.8 128 36.7
TAR365G0745 Trochodendron aralioides HOM05D005899 ORTHO05D007445 7.6e-06 55.5 54 44.4


User provided reference genes

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