Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G0714 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.5e-130 469.5 237 100.0
FAN05G3809 Fragaria x ananassa HOM05D003762 ORTHO05D004374 7.3e-130 467.2 237 99.2
FAN14G5252 Fragaria x ananassa HOM05D003762 ORTHO05D004374 7.3e-130 467.2 237 99.2
FvH4_6g29950 Fragaria vesca HOM05D003762 ORTHO05D004374 3.6e-129 464.9 237 98.7
FAN02G0052 Fragaria x ananassa HOM05D003762 ORTHO05D004374 5.3e-128 461.1 237 97.9
RcHm_v2.0_Chr2g0135951 Rosa chinensis HOM05D003762 ORTHO05D004374 2.0e-111 406.0 237 88.6
RcHm_v2.0_Chr6g0271261 Rosa chinensis HOM05D003762 ORTHO05D004374 5.5e-109 397.9 237 86.5
RcHm_v2.0_Chr6g0271271 Rosa chinensis HOM05D003762 ORTHO05D004374 6.0e-108 394.4 237 86.1
CiPaw.09G152500 Carya illinoinensis HOM05D003762 ORTHO05D004374 9.7e-74 280.8 240 59.2
Thecc.06G021200 Theobroma cacao HOM05D003762 ORTHO05D004374 2.8e-73 279.3 238 58.0
Duzib160G0900 Durio zibethinus HOM05D003762 ORTHO05D004374 1.1e-72 277.3 238 57.6
QL01p011549 Quercus lobata HOM05D003762 ORTHO05D004374 1.4e-72 276.9 239 57.7
Manes.04G114300 Manihot esculenta HOM05D003762 ORTHO05D004374 2.6e-71 272.7 230 58.7
Gohir.A02G058000 Gossypium hirsutum HOM05D003762 ORTHO05D004374 2.2e-70 269.6 228 57.9
Gorai.005G071700 Gossypium raimondii HOM05D003762 ORTHO05D004374 2.2e-70 269.6 228 57.5
Gohir.D02G063800 Gossypium hirsutum HOM05D003762 ORTHO05D004374 1.5e-69 266.9 228 57.0
GSVIVG01004444001 Vitis vinifera HOM05D003762 ORTHO05D004374 2.1e-68 263.1 241 56.8
Cfa001979 Carpinus fangiana HOM05D003762 ORTHO05D004374 4.7e-68 261.9 240 55.4
Prupe.1G576300 Prunus persica HOM05D003762 ORTHO05D004374 1.8e-67 260.0 235 57.0
Prupe.5G067300 Prunus persica HOM05D003762 ORTHO05D004374 1.8e-67 260.0 235 57.4
FAN09G1243 Fragaria x ananassa HOM05D003762 ORTHO05D004374 6.8e-67 258.1 235 57.4
Nn1g05222 Nelumbo nucifera HOM05D003762 ORTHO05D004374 2.6e-66 256.1 233 56.2
Potri.003G033600 Populus trichocarpa HOM05D003762 ORTHO05D004374 3.4e-66 255.8 242 55.0
Phvul.008G021700 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 4.4e-66 255.4 240 55.0
Potri.018G000800 Populus trichocarpa HOM05D003762 ORTHO05D004374 7.5e-66 254.6 240 54.2
Glyma.18G279200 Glycine max HOM05D003762 ORTHO05D004374 1.3e-65 253.8 240 54.6
Cpa.g.sc37.21 Carica papaya HOM05D003762 ORTHO05D004374 2.2e-65 253.1 230 56.5
Ciclev10026399m.g Citrus clementina HOM05D003762 ORTHO05D004374 2.2e-65 253.1 232 56.9
ClCG02G018290 Citrullus lanatus HOM05D003762 ORTHO05D004374 8.3e-65 251.1 241 53.1
MD15G1431400 Malus domestica HOM05D003762 ORTHO05D004374 8.3e-65 251.1 200 60.0
Dinv08128 Davidia involucrata HOM05D003762 ORTHO05D004374 1.1e-64 250.8 237 53.2
VMungo1383G0008 Vigna mungo HOM05D003762 ORTHO05D004374 1.4e-64 250.4 240 54.2
Sabra01G0002500 Salix brachista HOM05D003762 ORTHO05D004374 3.1e-64 249.2 240 52.9
CANSAT35G0296 Cannabis sativa HOM05D003762 ORTHO05D004374 4.1e-64 248.8 239 53.6
Potri.001G003700 Populus trichocarpa HOM05D003762 ORTHO05D004374 7.0e-64 248.1 240 52.5
TWI56G0980 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 9.1e-64 247.7 240 53.8
Atru.chr1.3040 Acer truncatum HOM05D003762 ORTHO05D004374 1.0e-62 244.2 230 53.0
Actinidia15994 Actinidia chinensis HOM05D003762 ORTHO05D004374 1.0e-62 244.2 237 51.9
CSS0030442 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 3.8e-62 242.3 238 52.9
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 1.1e-61 240.7 234 55.1
arahy.Tifrunner.gnm1.ann1.VKA3KK Arachis hypogaea HOM05D003762 ORTHO05D004374 2.5e-61 239.6 240 52.9
Sed0021000 Sechium edule HOM05D003762 ORTHO05D004374 7.2e-61 238.0 242 51.7
arahy.Tifrunner.gnm1.ann1.IN3X4V Arachis hypogaea HOM05D003762 ORTHO05D004374 9.4e-61 237.7 240 52.5
CSS0038493 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 1.2e-60 237.3 238 51.7
Cc08_g05300 Coffea canephora HOM05D003762 ORTHO05D004374 1.2e-60 237.3 240 48.8
MELO3C014058.2 Cucumis melo HOM05D003762 ORTHO05D004374 1.2e-60 237.3 244 49.2
ClCG00G001180 Citrullus lanatus HOM05D003762 ORTHO05D004374 2.7e-60 236.1 244 48.8
ClCG10G003800 Citrullus lanatus HOM05D003762 ORTHO05D004374 2.7e-60 236.1 244 48.8
Lj1g0002607 Lotus japonicus HOM05D003762 ORTHO05D004374 2.7e-60 236.1 239 50.6
Rhsim05G0080000 Rhododendron simsii HOM05D003762 ORTHO05D004374 3.6e-60 235.7 238 49.2
CsaV3_3G003760 Cucumis sativus L. HOM05D003762 ORTHO05D004374 2.3e-59 233.0 244 48.4
COL.COLO4_12944 Corchorus olitorius HOM05D003762 ORTHO05D004374 3.0e-59 232.6 244 49.6
TWI36G0443 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 1.5e-58 230.3 240 50.0
Eucgr.F01771 Eucalyptus grandis HOM05D003762 ORTHO05D004374 5.7e-58 228.4 230 48.7
vmacro11452 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 7.5e-58 228.0 238 49.2
PGR044G0538 Punica granatum HOM05D003762 ORTHO05D004374 4.8e-57 225.3 232 52.2
Hma1.2p1_0515F.1_g170140 Hydrangea macrophylla HOM05D003762 ORTHO05D004374 8.3e-57 224.6 235 50.2
Rhsim11G0183700 Rhododendron simsii HOM05D003762 ORTHO05D004374 8.3e-57 224.6 230 49.1
Aqoxy6G02090 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 1.8e-56 223.4 229 49.3
DCAR_002196 Daucus carota HOM05D003762 ORTHO05D004374 2.0e-55 219.9 240 48.8
THA.LOC104798921 Tarenaya hassleriana HOM05D003762 ORTHO05D004374 4.5e-55 218.8 234 50.9
FAN02G2701 Fragaria x ananassa HOM05D003762 ORTHO05D004374 5.9e-55 218.4 215 56.7
Lalb_Chr17g0343451 Lupinus albus HOM05D003762 ORTHO05D004374 7.7e-55 218.0 232 48.7
MBI14_g44482_MAGBIO Magnolia biondii HOM05D003762 ORTHO05D004374 1.7e-54 216.9 234 48.3
MSTRG.11877 Avicennia marina HOM05D003762 ORTHO05D004374 2.3e-54 216.5 230 45.2
CAN.G812.32 Capsicum annuum HOM05D003762 ORTHO05D004374 3.8e-54 215.7 241 46.5
Aa31sc38G110 Aethionema arabicum HOM05D003762 ORTHO05D004374 5.0e-54 215.3 231 49.4
Oeu056611.1 Olea europaea HOM05D003762 ORTHO05D004374 8.6e-54 214.5 236 45.3
Aqoxy6G01949 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 1.1e-53 214.2 227 46.7
PGSC0003DMG402007612 Solanum tuberosum HOM05D003762 ORTHO05D004374 1.5e-53 213.8 235 44.3
Sopen08g024260 Solanum pennellii HOM05D003762 ORTHO05D004374 7.2e-53 211.5 235 44.7
Sed0000714 Sechium edule HOM05D003762 ORTHO05D004374 1.2e-52 210.7 238 46.2
Haze_16536 Corylus avellana HOM05D003762 ORTHO05D004374 1.6e-52 210.3 211 52.6
SGA_v2.0_scaffold120G32921 Striga asiatica HOM05D003762 ORTHO05D004374 1.6e-52 210.3 229 46.7
Nitab4.5_0000255g0050 Nicotiana tabacum HOM05D003762 ORTHO05D004374 2.1e-52 209.9 240 45.4
Eucgr.J01004 Eucalyptus grandis HOM05D003762 ORTHO05D004374 4.7e-52 208.8 225 48.9
Nitab4.5_0000898g0100 Nicotiana tabacum HOM05D003762 ORTHO05D004374 4.7e-52 208.8 240 45.4
Peaxi162Scf00053g00522 Petunia axillaris HOM05D003762 ORTHO05D004374 8.0e-52 208.0 238 46.6
Psat4g001640 Pisum sativum HOM05D003762 ORTHO05D004374 8.0e-52 208.0 238 44.5
Ca_06841_v3 Cicer arietinum L. HOM05D003762 ORTHO05D004374 2.3e-51 206.5 231 46.3
Hund13161 Selenicereus undatus HOM05D003762 ORTHO05D004374 2.3e-51 206.5 237 45.1
Migut.J01128 Erythranthe guttata HOM05D003762 ORTHO05D004374 3.0e-51 206.1 237 43.5
TPR.G19896 Trifolium pratense HOM05D003762 ORTHO05D004374 4.0e-51 205.7 238 44.5
arahy.Tifrunner.gnm1.ann1.RFRX47 Arachis hypogaea HOM05D003762 ORTHO05D004374 6.8e-51 204.9 229 45.9
Aa31LG11G3050 Aethionema arabicum HOM05D003762 ORTHO05D004374 2.0e-50 203.4 232 48.3
SGA_v2.0_scaffold146G36137 Striga asiatica HOM05D003762 ORTHO05D004374 2.0e-50 203.4 235 44.7
PSO455G0078 Papaver somniferum HOM05D003762 ORTHO05D004374 2.6e-50 203.0 235 43.4
arahy.Tifrunner.gnm1.ann1.1PQR27 Arachis hypogaea HOM05D003762 ORTHO05D004374 3.4e-50 202.6 229 45.4
arahy.Tifrunner.gnm1.ann1.3GPH34 Arachis hypogaea HOM05D003762 ORTHO05D004374 4.9e-49 198.7 229 44.1
Ciclev10009494m.g Citrus clementina HOM05D003762 ORTHO05D004374 6.3e-49 198.4 232 48.7
Phvul.010G127200 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 8.3e-49 198.0 233 45.5
Glyma.09G089900 Glycine max HOM05D003762 ORTHO05D004374 1.1e-48 197.6 235 45.1
Ah.03g133930 Amaranthus hybridus HOM05D003762 ORTHO05D004374 1.4e-48 197.2 230 45.7
ECA246G1447 Erigeron canadensis HOM05D000759 ORTHO05D000574 1.4e-48 197.2 229 42.8
ECA240G1229 Erigeron canadensis HOM05D003762 ORTHO05D004374 4.1e-48 195.7 229 44.1
Glyma.07G041800 Glycine max HOM05D003762 ORTHO05D004374 4.1e-48 195.7 230 44.3
AT5G23710 Arabidopsis thaliana HOM05D003762 ORTHO05D004374 9.2e-48 194.5 233 46.4
DCAR_030901 Daucus carota HOM05D003762 ORTHO05D004374 9.2e-48 194.5 241 44.0
Lj8P331T26 Lonicera japonica HOM05D003762 ORTHO05D004374 1.2e-47 194.1 197 49.7
HanXRQChr17g0537091 Helianthus annuus HOM05D003762 ORTHO05D004374 2.7e-47 193.0 199 45.7
HPP92_015034 Vanilla planifolia HOM05D003762 ORTHO05D004374 1.0e-46 191.0 204 47.5
Sp2g23520 Schrenkiella parvula HOM05D003762 ORTHO05D004374 1.3e-46 190.7 233 43.8
Sc24g0003260 Simmondsia chinensis HOM05D003762 ORTHO05D004374 2.9e-46 189.5 240 43.8
PGSC0003DMG400003846 Solanum tuberosum HOM05D003762 ORTHO05D004374 2.9e-46 189.5 241 42.3
ATR0580G255 Amborella trichopoda HOM05D003762 ORTHO05D004374 6.6e-46 188.3 220 42.7
Lsat_1_v5_gn_3_23460 Lactuca sativa HOM05D003762 ORTHO05D004374 6.6e-46 188.3 223 41.7
FAN05G0849 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.1e-45 187.6 207 52.2
Carub.0006s2146 Capsella rubella HOM05D003762 ORTHO05D004374 1.5e-45 187.2 233 42.9
Thhalv10005351m.g Eutrema salsugineum HOM05D003762 ORTHO05D004374 1.5e-45 187.2 234 44.0
A06p34610 Brassica napus HOM05D003762 ORTHO05D004374 1.9e-45 186.8 233 43.3
BraA06t26389Z Brassica rapa HOM05D003762 ORTHO05D004374 1.9e-45 186.8 233 43.3
PSO170G1737 Papaver somniferum HOM05D003762 ORTHO05D004374 1.9e-45 186.8 233 42.9
TAR625G0731 Trochodendron aralioides HOM05D003762 ORTHO05D004374 3.3e-45 186.0 187 50.8
BcaNung01845 Brassica carinata HOM05D003762 ORTHO05D004374 7.3e-45 184.9 233 42.9
C07p43880 Brassica napus HOM05D003762 ORTHO05D004374 7.3e-45 184.9 233 42.9
BolC7t44916H Brassica oleracea HOM05D003762 ORTHO05D004374 7.3e-45 184.9 233 42.9
HanXRQChr03g0081311 Helianthus annuus HOM05D003762 ORTHO05D004374 2.1e-44 183.3 229 40.6
SalBow2G2359 Salvia bowleyana HOM05D003762 ORTHO05D004374 4.7e-44 182.2 240 40.8
AUR62024643 Chenopodium quinoa HOM05D003762 ORTHO05D004374 6.1e-44 181.8 233 42.5
Mapoly0090s0008 Marchantia polymorpha HOM05D003762 ORTHO05D004374 1.0e-43 181.0 216 42.1
TPR.G20064 Trifolium pratense HOM05D003762 ORTHO05D004374 1.8e-43 180.3 237 41.4
TAR636G2311 Trochodendron aralioides HOM05D003762 ORTHO05D004374 3.1e-43 179.5 154 53.9
AL6G34980 Arabidopsis lyrata HOM05D003762 ORTHO05D004374 4.0e-43 179.1 233 41.6
Atru.chr1.3022 Acer truncatum HOM05D003762 ORTHO05D004374 5.8e-42 175.3 154 53.2
CARHR189840 Cardamine hirsuta HOM05D003762 ORTHO05D004374 7.5e-42 174.9 233 41.6
BolC9t53671H Brassica oleracea HOM05D003762 ORTHO05D004374 9.8e-42 174.5 240 43.3
AagrBONN_evm.TU.Sc2ySwM_228.1250 Anthoceros agrestis HOM05D003762 ORTHO05D004374 1.9e-40 170.2 227 38.3
BcaC04g23509 Brassica carinata HOM05D003762 ORTHO05D004374 2.4e-40 169.9 237 42.2
Medtr7g109780 Medicago truncatula HOM05D003762 ORTHO05D004374 2.4e-40 169.9 194 42.3
BraA09t36329Z Brassica rapa HOM05D003762 ORTHO05D004374 2.0e-39 166.8 240 42.5
CAN.G1683.1 Capsicum annuum HOM05D003762 ORTHO05D004374 3.5e-39 166.0 211 42.7
CAN.G2872.1 Capsicum annuum HOM05D003762 ORTHO05D004374 3.5e-39 166.0 212 43.4
Pp3c22_6800 Physcomitrium patens HOM05D003762 ORTHO05D004374 1.3e-38 164.1 216 37.0
Peaxi162Scf00573g00044 Petunia axillaris HOM05D003762 ORTHO05D004374 6.6e-38 161.8 231 39.0
A09p06830 Brassica napus HOM05D003762 ORTHO05D004374 2.5e-37 159.8 240 41.7
MELO3C007348.2 Cucumis melo HOM05D003762 ORTHO05D004374 2.5e-37 159.8 201 42.8
Solyc08g075580.3 Solanum lycopersicum HOM05D003762 ORTHO05D004374 2.5e-37 159.8 151 49.0
Zm00001eb276730 Zea mays HOM05D003762 ORTHO05D004374 2.5e-37 159.8 213 39.4
Zm00001eb386260 Zea mays HOM05D003762 ORTHO05D004374 2.5e-37 159.8 213 39.4
C09p07550 Brassica napus HOM05D003762 ORTHO05D004374 4.3e-37 159.1 238 40.8
HPP92_015113 Vanilla planifolia HOM05D003762 ORTHO05D004374 9.5e-37 157.9 154 48.7
BcaB04g19852 Brassica carinata HOM05D003762 ORTHO05D004374 1.6e-36 157.1 234 40.2
BcaB04g19853 Brassica carinata HOM05D003762 ORTHO05D004374 1.6e-36 157.1 234 40.2
Medtr0003s0690 Medicago truncatula HOM05D003762 ORTHO05D004374 2.1e-36 156.8 177 41.8
QL03p059502 Quercus lobata HOM05D003762 ORTHO05D004374 1.1e-35 154.5 229 36.7
PSO455G0143 Papaver somniferum HOM05D003762 ORTHO05D004374 5.2e-35 152.1 229 38.0
Lsat_1_v5_gn_3_23440 Lactuca sativa HOM05D003762 ORTHO05D004374 3.4e-34 149.4 169 43.2
vmacro16904 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 4.4e-34 149.1 165 41.2
Oeu056610.1 Olea europaea HOM05D003762 ORTHO05D004374 3.7e-33 146.0 147 46.3
VMungo0331G0552 Vigna mungo HOM05D003762 ORTHO05D004374 8.3e-33 144.8 216 39.8
Cre07.g314950 Chlamydomonas reinhardtii HOM05D003762 ORTHO05D004374 2.4e-32 143.3 216 36.1
QL06p036898 Quercus lobata HOM05D003762 ORTHO05D004374 2.4e-32 143.3 122 54.9
unitig_0.g2831 Utricularia gibba HOM05D003762 ORTHO05D004374 5.4e-32 142.1 218 34.4
MD08G1239800 Malus domestica HOM05D003762 ORTHO05D004374 2.7e-31 139.8 117 57.3
MCO15G473 Micromonas commoda HOM05D003762 ORTHO05D004374 6.0e-31 138.7 227 34.8
Rhsim12G0192200 Rhododendron simsii HOM05D003762 ORTHO05D004374 7.8e-31 138.3 144 45.8
Oeu039594.1 Olea europaea HOM05D003762 ORTHO05D004374 2.3e-30 136.7 168 41.7
Zm00001eb356740 Zea mays HOM05D003762 ORTHO05D004374 5.6e-29 132.1 180 39.4
FvH4_6g41460 Fragaria vesca HOM05D003762 ORTHO05D004374 7.3e-29 131.7 134 56.0
FAN14G0588 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.2e-28 131.0 150 50.7
Atru.chr1.3024 Acer truncatum HOM05D003762 ORTHO05D004374 1.3e-25 120.9 109 56.0
VMungo0720G1683 Vigna mungo HOM05D003762 ORTHO05D004374 7.8e-23 111.7 139 43.2
Aqoxy6G01956 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 6.2e-20 102.1 92 48.9
HanXRQChr03g0081131 Helianthus annuus HOM05D003762 ORTHO05D004374 1.8e-19 100.5 79 54.4
QL05p029016 Quercus lobata HOM05D003762 ORTHO05D004374 4.0e-19 99.4 88 52.3
AUR62011796 Chenopodium quinoa HOM05D003762 ORTHO05D004374 4.2e-16 89.4 112 48.2
Potri.003G221301 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.2e-15 87.8 134 39.6
Atru.chr1.3033 Acer truncatum HOM05D003762 ORTHO05D004374 4.6e-15 85.9 78 50.0
Nitab4.5_0009310g0060 Nicotiana tabacum HOM05D003762 ORTHO05D004374 6.0e-15 85.5 91 41.8
Nn1g05046 Nelumbo nucifera HOM05D002280 ORTHO05D002322 7.8e-15 85.1 88 47.7
SEGI_04069 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 3.9e-14 82.8 79 46.8
PRCOL_00004812 Prasinoderma coloniale HOM05D003762 ORTHO05D004374 4.3e-13 79.3 153 29.4
vmacro18986 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 1.4e-11 74.3 199 27.1
Os06g0603400 Oryza sativa ssp. japonica HOM05D003762 ORTHO05D004374 5.3e-11 72.4 57 54.4
SEGI_04929 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 3.4e-10 69.7 78 42.3
FAN14G5801 Fragaria x ananassa HOM05D003762 ORTHO05D205490 9.9e-10 68.2 34 85.3
PSO384G2135 Papaver somniferum HOM05D003762 ORTHO05D004374 1.7e-09 67.4 91 34.1
PSO384G3622 Papaver somniferum HOM05D003762 ORTHO05D004374 1.7e-09 67.4 91 34.1
TAR636G2069 Trochodendron aralioides HOM05D003762 ORTHO05D004374 7.9e-07 58.5 67 50.7


User provided reference genes

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