Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G0048 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1815.4 900 100.0
FAN14G5183 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1702.6 966 90.4
FAN05G0609 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1701.8 965 90.5
FAN02G1083 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1700.6 965 90.5
FAN05G5239 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1696.4 991 88.3
FvH4_6g10330 Fragaria vesca HOM05D005896 ORTHO05D007250 0.0e+00 1682.2 959 90.1
RcHm_v2.0_Chr3g0461101 Rosa chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1615.5 957 86.7
FAN14G5591 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1435.2 946 80.5
Prupe.6G287100 Prunus persica HOM05D005896 ORTHO05D007250 0.0e+00 1369.8 956 74.4
MD12G1182400 Malus domestica HOM05D005896 ORTHO05D007250 0.0e+00 1340.1 958 72.9
MD04G1168900 Malus domestica HOM05D005896 ORTHO05D007250 0.0e+00 1323.1 958 72.1
QL07p033519 Quercus lobata HOM05D005896 ORTHO05D007250 0.0e+00 1291.9 964 70.3
TWI77G0262 Tripterygium wilfordii HOM05D005896 ORTHO05D007250 0.0e+00 1270.0 903 72.5
Manes.09G113900 Manihot esculenta HOM05D005896 ORTHO05D007250 0.0e+00 1269.2 965 69.1
Actinidia11539 Actinidia chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1266.5 911 71.8
Atru.chr8.2358 Acer truncatum HOM05D005896 ORTHO05D007250 0.0e+00 1266.1 962 68.5
Thecc.05G004100 Theobroma cacao HOM05D005896 ORTHO05D007250 0.0e+00 1263.8 959 68.4
Dinv35431 Davidia involucrata HOM05D005896 ORTHO05D007250 0.0e+00 1263.4 938 69.4
GSVIVG01030240001 Vitis vinifera HOM05D005896 ORTHO05D007250 0.0e+00 1262.3 913 70.8
Potri.006G106000 Populus trichocarpa HOM05D005896 ORTHO05D007250 0.0e+00 1253.8 942 69.7
CANSAT35G1655 Cannabis sativa HOM05D005896 ORTHO05D007250 0.0e+00 1253.0 954 69.5
Glyma.18G209600 Glycine max HOM05D005896 ORTHO05D007250 0.0e+00 1250.7 959 67.8
Sabra06G0082600 Salix brachista HOM05D005896 ORTHO05D007250 0.0e+00 1249.6 942 69.2
Gohir.D04G136000 Gossypium hirsutum HOM05D005896 ORTHO05D007250 0.0e+00 1248.8 957 67.7
Gorai.012G119800 Gossypium raimondii HOM05D005896 ORTHO05D007250 0.0e+00 1248.8 957 67.8
Medtr7g071990 Medicago truncatula HOM05D005896 ORTHO05D007250 0.0e+00 1248.4 953 68.0
Lalb_Chr01g0023511 Lupinus albus HOM05D005896 ORTHO05D007250 0.0e+00 1238.8 946 67.3
Gohir.A04G096200 Gossypium hirsutum HOM05D005896 ORTHO05D007250 0.0e+00 1237.2 958 67.5
Lj1g0024727 Lotus japonicus HOM05D005896 ORTHO05D007250 0.0e+00 1236.9 910 69.9
Glyma.09G279500 Glycine max HOM05D005896 ORTHO05D007250 0.0e+00 1234.6 954 67.5
arahy.Tifrunner.gnm1.ann1.2FTV5P Arachis hypogaea HOM05D005896 ORTHO05D007250 0.0e+00 1227.2 953 66.9
Haze_21109 Corylus avellana HOM05D005896 ORTHO05D007250 0.0e+00 1226.1 947 68.8
Ca_26097_v3 Cicer arietinum L. HOM05D005896 ORTHO05D007250 0.0e+00 1223.8 921 68.4
arahy.Tifrunner.gnm1.ann1.Q3Q3XE Arachis hypogaea HOM05D005896 ORTHO05D007250 0.0e+00 1223.4 918 68.3
Phvul.008G089700 Phaseolus vulgaris HOM05D005896 ORTHO05D007250 0.0e+00 1220.3 885 70.1
MELO3C009120.2 Cucumis melo HOM05D005896 ORTHO05D007250 0.0e+00 1219.1 949 68.2
VMungo1383G2905 Vigna mungo HOM05D005896 ORTHO05D007250 0.0e+00 1217.2 889 69.6
Psat3g120600 Pisum sativum HOM05D005896 ORTHO05D007250 0.0e+00 1214.5 894 68.8
CSS0019926 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 0.0e+00 1213.7 912 69.3
Sed0010587 Sechium edule HOM05D005896 ORTHO05D007250 0.0e+00 1211.8 931 68.5
Cc06_g00650 Coffea canephora HOM05D005896 ORTHO05D007250 0.0e+00 1209.1 923 67.6
Aqoxy2G00762 Aquilegia oxysepala HOM05D005896 ORTHO05D007250 0.0e+00 1208.7 937 67.3
Nn2g11051 Nelumbo nucifera HOM05D005896 ORTHO05D007250 0.0e+00 1208.0 942 67.1
CSS0029745 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 0.0e+00 1206.4 912 69.0
CsaV3_3G033280 Cucumis sativus L. HOM05D005896 ORTHO05D007250 0.0e+00 1205.3 939 67.9
TAR623G1464 Trochodendron aralioides HOM05D005896 ORTHO05D007250 0.0e+00 1201.4 969 66.4
Eucgr.A00643 Eucalyptus grandis HOM05D005896 ORTHO05D007250 0.0e+00 1196.0 940 67.4
vmacro20337 Vaccinium macrocarpon HOM05D005896 ORTHO05D007250 0.0e+00 1191.4 971 64.9
Sopen10g034850 Solanum pennellii HOM05D005896 ORTHO05D007250 0.0e+00 1190.3 914 66.7
CAN.G738.1 Capsicum annuum HOM05D005896 ORTHO05D007250 0.0e+00 1184.9 944 65.7
Lj2A64G51 Lonicera japonica HOM05D005896 ORTHO05D007250 0.0e+00 1179.9 884 69.6
MSTRG.5530 Avicennia marina HOM05D005896 ORTHO05D007250 0.0e+00 1176.0 902 67.5
ClCG10G022550 Citrullus lanatus HOM05D005896 ORTHO05D007250 0.0e+00 1175.2 1036 62.4
ECA236G3210 Erigeron canadensis HOM05D005896 ORTHO05D007250 0.0e+00 1172.1 883 68.7
PSO339G6300 Papaver somniferum HOM05D005896 ORTHO05D007250 0.0e+00 1170.6 956 64.7
Ciclev10011082m.g Citrus clementina HOM05D005896 ORTHO05D007250 0.0e+00 1164.4 826 72.2
Migut.J00081 Erythranthe guttata HOM05D005896 ORTHO05D007250 0.0e+00 1160.6 961 64.2
Rhsim05G0227300 Rhododendron simsii HOM05D005896 ORTHO05D007250 0.0e+00 1159.4 903 67.2
Nitab4.5_0004057g0040 Nicotiana tabacum HOM05D005896 ORTHO05D007250 0.0e+00 1159.1 883 67.6
HanXRQChr12g0363731 Helianthus annuus HOM05D005896 ORTHO05D007250 0.0e+00 1158.3 905 67.6
Cfa017090 Carpinus fangiana HOM05D005896 ORTHO05D007250 0.0e+00 1157.5 964 65.6
Sc02g0000680 Simmondsia chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1145.6 944 65.3
Lsat_1_v5_gn_8_105740 Lactuca sativa HOM05D005896 ORTHO05D007250 0.0e+00 1139.4 920 65.1
TPR.G18656 Trifolium pratense HOM05D005896 ORTHO05D007250 0.0e+00 1135.6 825 70.1
ATR0681G081 Amborella trichopoda HOM05D005896 ORTHO05D007250 0.0e+00 1129.8 932 63.7
CiPaw.09G216900 Carya illinoinensis HOM05D005896 ORTHO05D007250 0.0e+00 1129.0 804 73.4
Solyc10g085400.3 Solanum lycopersicum HOM05D005896 ORTHO05D007250 0.0e+00 1123.6 912 64.0
Nitab4.5_0001703g0070 Nicotiana tabacum HOM05D005896 ORTHO05D007250 0.0e+00 1096.3 881 64.7
THA.LOC104823308 Tarenaya hassleriana HOM05D005896 ORTHO05D007250 0.0e+00 1095.1 956 61.3
SalBow5G4224 Salvia bowleyana HOM05D005896 ORTHO05D007250 0.0e+00 1091.3 969 61.4
AUR62006318 Chenopodium quinoa HOM05D005896 ORTHO05D007250 6.1e-310 1067.4 922 61.5
Thhalv10020004m.g Eutrema salsugineum HOM05D005896 ORTHO05D007250 3.0e-309 1065.1 958 59.5
AL3G19830 Arabidopsis lyrata HOM05D005896 ORTHO05D007250 2.0e-308 1062.4 894 63.0
HPP92_013852 Vanilla planifolia HOM05D005896 ORTHO05D007250 2.0e-308 1062.4 901 62.8
BraA03t12806Z Brassica rapa HOM05D005896 ORTHO05D007250 1.4e-306 1056.2 951 59.7
Carub.0003s0795 Capsella rubella HOM05D005896 ORTHO05D007250 5.3e-306 1054.3 950 58.9
A03p36350 Brassica napus HOM05D005896 ORTHO05D007250 9.1e-306 1053.5 950 59.7
AT3G08840 Arabidopsis thaliana HOM05D005896 ORTHO05D007250 1.3e-304 1049.7 957 58.6
BcaC01g04196 Brassica carinata HOM05D005896 ORTHO05D007250 1.1e-303 1046.6 956 58.8
BcaB04g18571 Brassica carinata HOM05D005896 ORTHO05D007250 1.9e-303 1045.8 957 59.2
COL.COLO4_14429 Corchorus olitorius HOM05D005896 ORTHO05D007250 9.4e-303 1043.5 957 60.8
DCAR_028898 Daucus carota HOM05D005896 ORTHO05D007250 8.0e-302 1040.4 905 61.9
BolC3t16668H Brassica oleracea HOM05D005896 ORTHO05D007250 2.3e-301 1038.9 956 58.6
Os07g0691200 Oryza sativa ssp. japonica HOM05D005896 ORTHO05D007250 3.3e-300 1035.0 894 60.1
Zm00001eb111890 Zea mays HOM05D005896 ORTHO05D007250 5.3e-298 1027.7 932 58.6
BcaC09g49362 Brassica carinata HOM05D005896 ORTHO05D007250 2.7e-297 1025.4 881 60.8
BcaB04g20289 Brassica carinata HOM05D005896 ORTHO05D007250 4.7e-294 1014.6 897 59.5
C03p43970 Brassica napus HOM05D005896 ORTHO05D007250 4.4e-292 1008.1 934 58.1
C01p37440 Brassica napus HOM05D005896 ORTHO05D007250 1.3e-291 1006.5 960 57.2
A01p29640 Brassica napus HOM05D005896 ORTHO05D007250 2.2e-291 1005.7 882 60.1
BraA01t03093Z Brassica rapa HOM05D005896 ORTHO05D007250 9.1e-290 1000.3 897 59.8
SEGI_19702 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 1.6e-289 999.6 898 59.6
Aa31LG5G18810 Aethionema arabicum HOM05D005896 ORTHO05D007250 1.1e-274 950.3 810 62.2
HPP92_013866 Vanilla planifolia HOM05D005896 ORTHO05D007250 3.0e-272 942.2 901 57.5
CAN.G1288.7 Capsicum annuum HOM05D005896 ORTHO05D007250 1.2e-260 903.7 788 61.5
A03p36380 Brassica napus HOM05D005896 ORTHO05D007250 1.2e-244 850.5 784 58.4
SMO228G0083 Selaginella moellendorffii HOM05D005896 ORTHO05D007250 3.3e-239 832.4 896 50.7
Peaxi162Scf00009g01011 Petunia axillaris HOM05D005896 ORTHO05D007250 1.8e-237 826.6 598 68.9
Hma1.2p1_2300F.1_g319233 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 4.6e-233 812.0 602 70.1
Hma1.2p1_2300F.1_g319236 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 8.4e-227 791.2 602 69.1
Mapoly0266s0003 Marchantia polymorpha HOM05D005896 ORTHO05D007250 1.4e-226 790.4 900 47.8
HanXRQChr16g0509701 Helianthus annuus HOM05D005896 ORTHO05D007250 3.9e-224 782.3 683 63.0
Actinidia26603 Actinidia chinensis HOM05D005896 ORTHO05D007250 1.5e-215 753.8 581 68.3
CARHR083150 Cardamine hirsuta HOM05D005896 ORTHO05D007250 5.0e-187 659.1 560 61.6
PRCOL_00001217 Prasinoderma coloniale HOM05D005896 ORTHO05D007250 3.0e-184 649.8 913 42.8
MBI15_g29358_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 4.0e-184 649.4 535 64.9
AUR62026359 Chenopodium quinoa HOM05D005896 ORTHO05D007250 7.2e-178 628.6 921 43.8
Oeu023744.1 Olea europaea HOM05D005896 ORTHO05D007250 1.4e-173 614.4 445 68.8
AagrBONN_evm.TU.Sc2ySwM_362.2825 Anthoceros agrestis HOM05D005896 ORTHO05D007250 1.4e-168 597.8 615 51.7
BolC1t03711H Brassica oleracea HOM05D005896 ORTHO05D007250 8.8e-168 595.1 532 59.4
Pp3c18_18940 Physcomitrium patens HOM05D005896 ORTHO05D007250 2.2e-166 590.5 711 47.0
PGSC0003DMG400011105 Solanum tuberosum HOM05D005896 ORTHO05D007250 1.2e-159 568.2 417 67.6
Cpa.g.c34215 Carica papaya HOM05D005896 ORTHO05D007250 2.2e-150 537.3 396 68.4
Oeu033807.1 Olea europaea HOM05D005896 ORTHO05D007250 3.5e-108 397.1 381 59.1
Hma1.2p1_2300F.1_g319240 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 6.7e-107 392.9 268 73.1
Nn2g16051 Nelumbo nucifera HOM05D005896 ORTHO05D007250 5.9e-87 326.6 216 77.3
Peaxi162Scf00009g01010 Petunia axillaris HOM05D005896 ORTHO05D007250 7.4e-82 309.7 276 62.7
BolC1t03712H Brassica oleracea HOM05D005896 ORTHO05D007250 9.7e-82 309.3 278 59.7
Hma1.2p1_3169F.1_g333550 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 2.0e-79 301.6 336 51.2
Hund03771 Selenicereus undatus HOM05D005896 ORTHO05D007250 1.6e-71 275.4 239 59.8
CBR_g38233 Chara braunii HOM05D005896 ORTHO05D007250 3.1e-64 251.1 248 54.4
SEGI_37805 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 1.5e-53 215.7 172 62.8
CBR_g45569 Chara braunii HOM05D005896 ORTHO05D007250 4.4e-42 177.6 211 45.0
MBI15_g29355_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 1.5e-29 136.0 190 46.3
MBI15_g25466_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 1.2e-28 132.9 189 45.5
CiPaw.01G264800 Carya illinoinensis HOM05D001401 ORTHO05D002222 1.7e-22 112.5 82 72.0
CBR_g38232 Chara braunii HOM05D000019 ORTHO05D000048 2.5e-21 108.6 268 32.1
TPR.G7700 Trifolium pratense HOM05D005896 ORTHO05D007250 5.6e-21 107.5 99 57.6
Solyc09g031528.1 Solanum lycopersicum HOM05D005896 ORTHO05D007250 3.8e-17 94.7 59 72.9
Cre15.g635650 Chlamydomonas reinhardtii HOM05D005896 ORTHO05D007250 8.4e-17 93.6 402 24.1
Glyma.16G116800 Glycine max HOM05D005896 ORTHO05D007250 5.1e-14 84.3 92 52.2
QL06p031927 Quercus lobata HOM05D005896 ORTHO05D007250 2.7e-07 62.0 52 61.5
Solyc09g015130.4 Solanum lycopersicum HOM05D005896 ORTHO05D007250 3.5e-07 61.6 33 84.8
COL.COLO4_03233 Corchorus olitorius HOM05D005896 ORTHO05D007250 2.3e-06 58.9 117 36.8
TAR381G1729 Trochodendron aralioides HOM05D000406 ORTHO05D002714 6.6e-06 57.4 31 83.9


User provided reference genes

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