Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G3587 Fragaria x ananassa HOM05D005402 ORTHO05D007036 0.0e+00 1273.5 652 100.0
FAN18G2172 Fragaria x ananassa HOM05D005402 ORTHO05D007036 0.0e+00 1224.9 656 96.2
FAN04G1555 Fragaria x ananassa HOM05D005402 ORTHO05D007036 0.0e+00 1211.4 656 95.3
FAN13G2175 Fragaria x ananassa HOM05D005402 ORTHO05D007036 0.0e+00 1204.5 656 94.5
FvH4_5g29980 Fragaria vesca HOM05D005402 ORTHO05D007036 0.0e+00 1166.8 652 92.9
RcHm_v2.0_Chr7g0223851 Rosa chinensis HOM05D005402 ORTHO05D007036 0.0e+00 1142.9 656 89.2
Prupe.4G224400 Prunus persica HOM05D005402 ORTHO05D007036 1.5e-297 1025.8 652 79.8
Haze_06819 Corylus avellana HOM05D005402 ORTHO05D007036 1.0e-258 896.7 653 70.3
Cfa000204 Carpinus fangiana HOM05D005402 ORTHO05D007036 9.0e-255 883.6 653 69.7
Dinv13911 Davidia involucrata HOM05D005402 ORTHO05D007036 8.7e-250 867.1 662 66.9
Thecc.06G223300 Theobroma cacao HOM05D005402 ORTHO05D007036 1.9e-249 865.9 654 66.7
GSVIVG01012705001 Vitis vinifera HOM05D005402 ORTHO05D007036 1.3e-248 863.2 656 66.6
QL05p072729 Quercus lobata HOM05D005402 ORTHO05D007036 1.4e-247 859.8 655 67.0
Duzib235G0987 Durio zibethinus HOM05D005402 ORTHO05D007036 1.2e-246 856.7 658 65.8
Gohir.D05G174500 Gossypium hirsutum HOM05D005402 ORTHO05D007036 3.8e-245 851.7 657 65.4
Gohir.A05G171400 Gossypium hirsutum HOM05D005402 ORTHO05D007036 8.5e-245 850.5 657 65.3
CSS0005702 Camellia sinensis var. sinensis HOM05D005402 ORTHO05D007036 1.1e-244 850.1 653 66.2
Atru.chr10.2252 Acer truncatum HOM05D005402 ORTHO05D007036 2.5e-244 849.0 654 65.6
Ciclev10014465m.g Citrus clementina HOM05D005402 ORTHO05D007036 7.2e-244 847.4 656 64.9
Gorai.009G179800 Gossypium raimondii HOM05D005402 ORTHO05D007036 6.1e-243 844.3 657 65.0
CANSAT56G4097 Cannabis sativa HOM05D005402 ORTHO05D007036 3.3e-241 838.6 658 65.3
ClCG01G021860 Citrullus lanatus HOM05D005402 ORTHO05D007036 7.4e-241 837.4 652 64.1
Hma1.2p1_0412F.1_g147300 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 1.3e-240 836.6 655 65.2
Ca_21074_v3 Cicer arietinum L. HOM05D005402 ORTHO05D007036 1.1e-236 823.5 663 62.3
Glyma.17G012200 Glycine max HOM05D005402 ORTHO05D007036 3.2e-236 822.0 657 63.2
PGR004G0080 Punica granatum HOM05D005402 ORTHO05D007036 7.2e-236 820.8 651 63.1
MD15G1066800 Malus domestica HOM05D005402 ORTHO05D007036 9.4e-236 820.5 661 64.6
MELO3C007401.2 Cucumis melo HOM05D005402 ORTHO05D007036 2.7e-235 818.9 652 62.6
Phvul.003G080200 Phaseolus vulgaris HOM05D005402 ORTHO05D007036 3.6e-235 818.5 658 62.9
vmacro15795 Vaccinium macrocarpon HOM05D005402 ORTHO05D007036 1.0e-234 817.0 661 62.6
Manes.16G005300 Manihot esculenta HOM05D005402 ORTHO05D007036 3.0e-234 815.5 650 63.2
TPR.G36999 Trifolium pratense HOM05D005402 ORTHO05D007036 5.7e-233 811.2 653 62.2
CsaV3_6G048920 Cucumis sativus L. HOM05D005402 ORTHO05D007036 7.4e-233 810.8 653 62.2
Sed0000438 Sechium edule HOM05D005402 ORTHO05D007036 1.3e-232 810.1 652 63.2
Nn1g07183 Nelumbo nucifera HOM05D005402 ORTHO05D007036 3.7e-232 808.5 658 63.5
TAR629G0778 Trochodendron aralioides HOM05D005402 ORTHO05D007036 3.7e-232 808.5 658 64.0
Medtr4g132340 Medicago truncatula HOM05D005402 ORTHO05D007036 4.8e-232 808.1 652 61.7
Potri.007G040000 Populus trichocarpa HOM05D005402 ORTHO05D007036 8.2e-232 807.4 657 63.6
Glyma.07G261900 Glycine max HOM05D005402 ORTHO05D007036 1.1e-231 807.0 656 62.7
arahy.Tifrunner.gnm1.ann1.I0ZCH2 Arachis hypogaea HOM05D005402 ORTHO05D007036 5.3e-231 804.7 645 63.4
VMungo1215G1509 Vigna mungo HOM05D005402 ORTHO05D007036 1.2e-230 803.5 659 62.4
arahy.Tifrunner.gnm1.ann1.T40CTJ Arachis hypogaea HOM05D005402 ORTHO05D007036 1.1e-228 797.0 645 62.9
Dinv20063 Davidia involucrata HOM05D005402 ORTHO05D007036 7.2e-228 794.3 661 62.9
COL.COLO4_31795 Corchorus olitorius HOM05D005402 ORTHO05D007036 4.7e-227 791.6 658 61.2
Sopen02g011290 Solanum pennellii HOM05D005402 ORTHO05D007036 4.0e-226 788.5 656 61.1
PGSC0003DMG400022060 Solanum tuberosum HOM05D005402 ORTHO05D007036 2.0e-225 786.2 656 61.1
Solyc02g032920.3 Solanum lycopersicum HOM05D005402 ORTHO05D007036 3.3e-225 785.4 656 60.8
MD08G1079900 Malus domestica HOM05D005402 ORTHO05D007036 2.2e-224 782.7 653 63.2
HanXRQChr15g0470411 Helianthus annuus HOM05D005402 ORTHO05D007036 2.8e-224 782.3 651 61.0
Eucgr.D01347 Eucalyptus grandis HOM05D005402 ORTHO05D007036 1.4e-223 780.0 648 60.0
Sabra07G0036200 Salix brachista HOM05D005402 ORTHO05D007036 2.0e-222 776.2 666 62.2
MBI02_g15380_MAGBIO Magnolia biondii HOM05D005402 ORTHO05D007036 1.7e-221 773.1 667 59.8
CAN.G128.67 Capsicum annuum HOM05D005402 ORTHO05D007036 2.5e-220 769.2 657 59.8
DCAR_028193 Daucus carota HOM05D000001 ORTHO05D007036 3.2e-220 768.8 679 58.6
THA.LOC104806309 Tarenaya hassleriana HOM05D005402 ORTHO05D007036 4.2e-220 768.5 654 59.9
Lalb_Chr07g0177141 Lupinus albus HOM05D005402 ORTHO05D007036 1.6e-219 766.5 652 60.1
Lsat_1_v5_gn_7_16460 Lactuca sativa HOM05D005402 ORTHO05D007036 6.1e-219 764.6 652 59.0
MSTRG.7199 Avicennia marina HOM05D005402 ORTHO05D007036 1.0e-218 763.8 659 59.5
Oeu040335.1 Olea europaea HOM05D005402 ORTHO05D007036 1.0e-218 763.8 657 59.5
Psat4g006080 Pisum sativum HOM05D005402 ORTHO05D007036 1.4e-218 763.5 658 59.0
PSO675G3880 Papaver somniferum HOM05D005402 ORTHO05D007036 3.0e-218 762.3 658 60.0
Migut.M01334 Erythranthe guttata HOM05D005402 ORTHO05D007036 4.0e-218 761.9 647 59.5
PSO541G1465 Papaver somniferum HOM05D005402 ORTHO05D007036 5.2e-218 761.5 658 59.9
Cc09_g01510 Coffea canephora HOM05D005402 ORTHO05D007036 6.8e-218 761.1 659 59.2
Hund23456 Selenicereus undatus HOM05D005402 ORTHO05D007036 8.8e-218 760.8 656 57.8
Lj4g0015196 Lotus japonicus HOM05D005402 ORTHO05D007036 1.7e-216 756.5 653 60.0
Nitab4.5_0000005g0240 Nicotiana tabacum HOM05D005402 ORTHO05D007036 6.3e-216 754.6 630 61.3
SalBow8G4792 Salvia bowleyana HOM05D005402 ORTHO05D007036 1.8e-215 753.1 649 58.9
Aa31LG6G3970 Aethionema arabicum HOM05D005402 ORTHO05D007036 2.4e-215 752.7 648 58.2
Nitab4.5_0004712g0050 Nicotiana tabacum HOM05D005402 ORTHO05D007036 2.4e-215 752.7 630 60.3
Sp7g26160 Schrenkiella parvula HOM05D005402 ORTHO05D007036 7.2e-212 741.1 659 57.7
TWI63G0339 Tripterygium wilfordii HOM05D005402 ORTHO05D007036 1.4e-210 736.9 656 57.3
ECA236G3723 Erigeron canadensis HOM05D005402 ORTHO05D000490 8.8e-210 734.2 655 57.7
AL7G24400 Arabidopsis lyrata HOM05D005402 ORTHO05D007036 1.2e-209 733.8 660 56.8
Peaxi162Scf00307g01422 Petunia axillaris HOM05D005402 ORTHO05D007036 2.6e-209 732.6 662 57.6
Carub.0007s1256 Capsella rubella HOM05D005402 ORTHO05D007036 9.8e-209 730.7 658 56.4
Peaxi162Scf00394g00020 Petunia axillaris HOM05D005402 ORTHO05D007036 6.6e-205 718.0 654 57.6
CARHR235910 Cardamine hirsuta HOM05D005402 ORTHO05D007036 1.9e-204 716.5 650 56.9
BcaC07g38316 Brassica carinata HOM05D005402 ORTHO05D007036 9.5e-204 714.1 652 57.4
C08p10670 Brassica napus HOM05D005402 ORTHO05D007036 9.5e-204 714.1 652 57.2
BolC8t48740H Brassica oleracea HOM05D005402 ORTHO05D007036 3.6e-203 712.2 652 57.2
AUR62015290 Chenopodium quinoa HOM05D005402 ORTHO05D007036 1.0e-202 710.7 654 55.5
Lj2C266G9 Lonicera japonica HOM05D005402 ORTHO05D007036 2.3e-202 709.5 640 58.9
A08p20200 Brassica napus HOM05D005402 ORTHO05D007036 1.3e-200 703.7 653 56.8
BraA08t33979Z Brassica rapa HOM05D005402 ORTHO05D007036 1.3e-200 703.7 653 56.8
Aqoxy1G03121 Aquilegia oxysepala HOM05D005402 ORTHO05D007036 1.2e-198 697.2 658 54.1
BcaB03g12558 Brassica carinata HOM05D005402 ORTHO05D007036 1.9e-196 689.9 650 55.4
Ah.10g032740 Amaranthus hybridus HOM05D005402 ORTHO05D007036 2.1e-195 686.4 656 53.5
CiPaw.09G093500 Carya illinoinensis HOM05D005402 ORTHO05D007036 2.1e-195 686.4 509 69.9
AUR62032734 Chenopodium quinoa HOM05D005402 ORTHO05D007036 1.8e-194 683.3 665 53.2
Actinidia11859 Actinidia chinensis HOM05D005402 ORTHO05D007036 3.1e-194 682.6 654 56.3
AT4G28200 Arabidopsis thaliana HOM05D005402 ORTHO05D007036 1.7e-192 676.8 655 54.2
Thhalv10024642m.g Eutrema salsugineum HOM05D005402 ORTHO05D007036 2.4e-191 672.9 655 54.0
Os02g0103900 Oryza sativa ssp. japonica HOM05D005402 ORTHO05D007036 3.3e-188 662.5 686 50.6
CDE05G1008 Ceratophyllum demersum HOM05D005402 ORTHO05D007036 8.1e-187 657.9 656 53.0
unitig_748.g7549 Utricularia gibba HOM05D005402 ORTHO05D007036 4.0e-178 629.0 658 52.6
ATR0743G102 Amborella trichopoda HOM05D005402 ORTHO05D007036 1.2e-177 627.5 665 49.8
HPP92_012414 Vanilla planifolia HOM05D005402 ORTHO05D007036 3.0e-173 612.8 657 49.6
Hma1.2p1_0412F.1_g147310 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 5.1e-173 612.1 491 63.1
Zm00001eb118290 Zea mays HOM05D005402 ORTHO05D007036 1.4e-138 497.7 522 50.4
BcaB03g12559 Brassica carinata HOM05D005402 ORTHO05D007036 1.1e-130 471.5 382 63.4
SGA_v2.0_scaffold4G01907 Striga asiatica HOM05D005402 ORTHO05D007036 1.2e-129 468.0 615 46.0
Sc05g0009280 Simmondsia chinensis HOM05D005402 ORTHO05D007036 4.5e-129 466.1 358 65.4
EL10Ac3g06734 Beta vulgaris HOM05D005402 ORTHO05D007036 1.9e-127 460.7 364 64.0
SGA_v2.0_scaffold7G03813 Striga asiatica HOM05D005402 ORTHO05D007036 2.7e-126 456.8 483 49.3
Mapoly0165s0012 Marchantia polymorpha HOM05D005402 ORTHO05D007036 2.8e-123 446.8 664 38.1
SMO203G0067 Selaginella moellendorffii HOM05D005402 ORTHO05D007036 3.2e-111 406.8 648 36.3
Pp3c5_4450 Physcomitrium patens HOM05D005402 ORTHO05D007036 2.0e-97 360.9 655 35.4
AagrBONN_evm.TU.Sc2ySwM_228.882 Anthoceros agrestis HOM05D005402 ORTHO05D007036 3.5e-97 360.1 515 39.8
RcHm_v2.0_Chr7g0223961 Rosa chinensis HOM05D005402 ORTHO05D007036 1.9e-95 354.4 261 70.9
SEGI_35740 Sequoiadendron giganteum HOM05D005402 ORTHO05D007036 3.8e-88 330.1 368 48.1
Sc05g0009290 Simmondsia chinensis HOM05D005402 ORTHO05D007036 1.8e-82 311.2 287 54.7
CBR_g31384 Chara braunii HOM05D005402 ORTHO05D007036 2.3e-77 294.3 748 29.8
Cpa.g.sc1199.5 Carica papaya HOM05D005402 ORTHO05D007036 1.5e-76 291.6 268 55.6
RcHm_v2.0_Chr6g0291751 Rosa chinensis HOM05D005402 ORTHO05D007036 8.6e-72 275.8 229 64.2
EL10Ac3g06733 Beta vulgaris HOM05D005402 ORTHO05D007036 3.3e-63 247.3 357 38.9
Cre10.g442000 Chlamydomonas reinhardtii HOM05D005402 ORTHO05D007036 2.6e-60 237.7 713 27.3
CAN.G23.24 Capsicum annuum HOM05D005402 ORTHO05D007036 3.3e-55 220.7 271 45.8
RcHm_v2.0_Chr7g0223951 Rosa chinensis HOM05D005402 ORTHO05D007036 1.2e-52 212.2 128 88.3
RcHm_v2.0_Chr7g0223941 Rosa chinensis HOM05D005402 ORTHO05D007036 1.1e-37 162.5 82 90.2
AagrBONN_evm.TU.Sc2ySwM_228.888 Anthoceros agrestis HOM05D005402 ORTHO05D007036 1.5e-23 115.5 101 50.5
SalBow7G0548 Salvia bowleyana HOM05D005402 ORTHO05D037500 1.3e-22 112.5 110 53.6
MCO01G148 Micromonas commoda HOM05D005402 ORTHO05D007036 1.6e-22 112.1 212 32.5
Zm00001eb129750 Zea mays HOM05D005402 ORTHO05D007036 2.4e-21 108.2 211 32.2
SalBow5G5666 Salvia bowleyana HOM05D005402 ORTHO05D037500 5.3e-21 107.1 104 52.9
AagrBONN_evm.TU.Sc2ySwM_228.894 Anthoceros agrestis HOM05D005402 ORTHO05D007036 9.0e-21 106.3 86 52.3
SHI32968 Sapria himalayana HOM05D005402 ORTHO05D007036 1.5e-20 105.5 235 32.8
SalBow1G2367 Salvia bowleyana HOM05D005402 ORTHO05D037500 2.2e-19 101.7 76 63.2
Cfa022130 Carpinus fangiana HOM05D005402 ORTHO05D007036 3.2e-18 97.8 318 28.9
CARHR228840 Cardamine hirsuta HOM05D005402 ORTHO05D007036 2.1e-17 95.1 62 75.8
AagrBONN_evm.TU.Sc2ySwM_228.885 Anthoceros agrestis HOM05D005402 ORTHO05D007036 3.0e-16 91.3 156 35.9
A01p19620 Brassica napus HOM05D005402 ORTHO05D007036 2.2e-14 85.1 94 48.9
RcHm_v2.0_Chr6g0291761 Rosa chinensis HOM05D005402 ORTHO05D007036 6.3e-14 83.6 99 51.5
Hma1.2p1_0660F.1_g197590 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 1.1e-13 82.8 68 63.2
Zm00001eb238100 Zea mays HOM05D005402 ORTHO05D007036 1.2e-12 79.3 90 48.9
RcHm_v2.0_Chr0c11g0499491 Rosa chinensis HOM05D005402 ORTHO05D348090 4.8e-06 57.4 44 70.5


User provided reference genes

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