Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G2730 Fragaria x ananassa HOM05D006175 ORTHO05D008081 1.6e-118 429.5 220 100.0
FAN04G2119 Fragaria x ananassa HOM05D006175 ORTHO05D008081 3.3e-116 421.8 219 98.2
FAN13G0892 Fragaria x ananassa HOM05D006175 ORTHO05D008081 4.7e-115 417.9 220 96.8
FvH4_5g17980 Fragaria vesca HOM05D006175 ORTHO05D008081 6.2e-107 391.0 204 97.5
RcHm_v2.0_Chr7g0177621 Rosa chinensis HOM05D006175 ORTHO05D008081 9.9e-105 383.6 212 92.9
Lalb_Chr22g0353701 Lupinus albus HOM05D006175 ORTHO05D008081 1.3e-69 266.9 213 64.3
CANSAT01G2997 Cannabis sativa HOM05D006175 ORTHO05D008081 3.4e-65 252.3 210 63.3
Cfa020669 Carpinus fangiana HOM05D006175 ORTHO05D008081 3.4e-65 252.3 209 63.6
Prupe.8G055400 Prunus persica HOM05D006175 ORTHO05D008081 4.5e-65 251.9 211 63.0
TAR622G0246 Trochodendron aralioides HOM05D006175 ORTHO05D008081 2.2e-64 249.6 206 61.7
Eucgr.H00594 Eucalyptus grandis HOM05D006175 ORTHO05D008081 3.8e-64 248.8 208 65.4
arahy.Tifrunner.gnm1.ann1.R57YID Arachis hypogaea HOM05D006175 ORTHO05D008081 5.0e-64 248.4 207 65.2
arahy.Tifrunner.gnm1.ann1.SV5NHS Arachis hypogaea HOM05D006175 ORTHO05D008081 8.5e-64 247.7 207 65.2
CiPaw.15G150200 Carya illinoinensis HOM05D006175 ORTHO05D008081 8.5e-64 247.7 206 63.6
VMungo0464G1920 Vigna mungo HOM05D006175 ORTHO05D008081 2.5e-63 246.1 211 62.6
DCAR_023267 Daucus carota HOM05D006175 ORTHO05D008081 4.2e-63 245.4 208 62.0
CSS0011699 Camellia sinensis var. sinensis HOM05D006175 ORTHO05D008081 1.6e-62 243.4 213 59.2
QL10p033089 Quercus lobata HOM05D006175 ORTHO05D008081 2.7e-62 242.7 219 60.7
Lj2g0014656 Lotus japonicus HOM05D006175 ORTHO05D008081 6.1e-62 241.5 212 61.3
PGR083G2599 Punica granatum HOM05D006175 ORTHO05D008081 6.1e-62 241.5 209 60.8
GSVIVG01008158001 Vitis vinifera HOM05D006175 ORTHO05D008081 6.7e-61 238.0 202 61.9
Ciclev10019690m.g Citrus clementina HOM05D006175 ORTHO05D008081 8.8e-61 237.7 208 64.4
Oeu019145.1 Olea europaea HOM05D006175 ORTHO05D008081 1.1e-60 237.3 220 56.8
TPR.G28014 Trifolium pratense HOM05D006175 ORTHO05D008081 1.5e-60 236.9 213 58.7
Phvul.004G144700 Phaseolus vulgaris HOM05D006175 ORTHO05D008081 3.3e-60 235.7 208 61.5
Nitab4.5_0005973g0040 Nicotiana tabacum HOM05D006175 ORTHO05D008081 5.7e-60 235.0 212 57.5
CsaV3_1G032270 Cucumis sativus L. HOM05D006175 ORTHO05D008081 7.4e-60 234.6 211 60.7
Gohir.D05G004300 Gossypium hirsutum HOM05D006175 ORTHO05D008081 9.7e-60 234.2 205 61.5
Glyma.16G218700 Glycine max HOM05D006175 ORTHO05D008081 1.3e-59 233.8 203 61.1
SHI32102 Sapria himalayana HOM05D006175 ORTHO05D008081 4.8e-59 231.9 238 53.4
Gohir.A05G003900 Gossypium hirsutum HOM05D006175 ORTHO05D008081 8.2e-59 231.1 205 60.5
Manes.03G098800 Manihot esculenta HOM05D006175 ORTHO05D008081 8.2e-59 231.1 211 61.1
MELO3C001937.2 Cucumis melo HOM05D006175 ORTHO05D008081 1.1e-58 230.7 210 61.0
Duzib168G0906 Durio zibethinus HOM05D006175 ORTHO05D008081 1.1e-58 230.7 205 60.5
Nitab4.5_0001180g0190 Nicotiana tabacum HOM05D006175 ORTHO05D008081 1.8e-58 229.9 212 56.1
SGA_v2.0_scaffold90G27775 Striga asiatica HOM05D006175 ORTHO05D008081 1.8e-58 229.9 217 54.8
Atru.chr3.1303 Acer truncatum HOM05D006175 ORTHO05D008081 2.4e-58 229.6 207 58.0
SalBow5G1258 Salvia bowleyana HOM05D006175 ORTHO05D008081 2.4e-58 229.6 212 56.1
Medtr6g075170 Medicago truncatula HOM05D006175 ORTHO05D008081 4.1e-58 228.8 210 55.7
Sabra12G0027800 Salix brachista HOM05D006175 ORTHO05D008081 4.1e-58 228.8 219 58.4
Cc04_g09090 Coffea canephora HOM05D006175 ORTHO05D008081 5.3e-58 228.4 207 58.0
HanXRQChr05g0129721 Helianthus annuus HOM05D006175 ORTHO05D008081 5.3e-58 228.4 208 58.7
PGSC0003DMG400031043 Solanum tuberosum HOM05D006175 ORTHO05D008081 1.2e-57 227.3 207 56.5
Solyc03g098250.4 Solanum lycopersicum HOM05D006175 ORTHO05D008081 2.0e-57 226.5 206 56.3
Gorai.009G004100 Gossypium raimondii HOM05D006175 ORTHO05D008081 2.6e-57 226.1 211 59.2
Sed0010232 Sechium edule HOM05D006175 ORTHO05D008081 4.5e-57 225.3 209 59.8
CAN.G637.8 Capsicum annuum HOM05D006175 ORTHO05D008081 1.3e-56 223.8 205 56.1
Lsat_1_v5_gn_2_15241 Lactuca sativa HOM05D006175 ORTHO05D008081 1.3e-56 223.8 213 56.8
ClCG04G012690 Citrullus lanatus HOM05D006175 ORTHO05D008081 2.9e-56 222.6 204 59.3
Migut.O00238 Erythranthe guttata HOM05D006175 ORTHO05D008081 3.8e-56 222.2 204 56.9
HanXRQChr11g0338971 Helianthus annuus HOM05D006175 ORTHO05D008081 3.8e-56 222.2 208 57.7
Potri.012G039300 Populus trichocarpa HOM05D006175 ORTHO05D008081 3.8e-56 222.2 216 56.9
SpUn0288_0010 Schrenkiella parvula HOM05D006175 ORTHO05D008081 5.0e-56 221.9 206 56.8
PSO063G7422 Papaver somniferum HOM05D006175 ORTHO05D008081 6.5e-56 221.5 206 54.9
PSO782G5703 Papaver somniferum HOM05D006175 ORTHO05D008081 6.5e-56 221.5 206 54.9
Sopen03g028960 Solanum pennellii HOM05D006175 ORTHO05D008081 1.1e-55 220.7 214 52.8
Thhalv10001961m.g Eutrema salsugineum HOM05D006175 ORTHO05D008081 1.9e-55 219.9 204 55.4
Thecc.03G068300 Theobroma cacao HOM05D006175 ORTHO05D008081 1.9e-55 219.9 209 58.4
ECA238G0751 Erigeron canadensis HOM05D006175 ORTHO05D008081 2.5e-55 219.5 208 57.7
Aqoxy2G03817 Aquilegia oxysepala HOM05D006175 ORTHO05D008081 7.9e-54 214.5 208 56.2
TWI60G0630 Tripterygium wilfordii HOM05D006175 ORTHO05D008081 7.9e-54 214.5 201 56.7
MD06G1235400 Malus domestica HOM05D006175 ORTHO05D008081 1.8e-53 213.4 203 58.6
Peaxi162Scf00171g00431 Petunia axillaris HOM05D006175 ORTHO05D008081 5.2e-53 211.8 205 55.1
THA.LOC104810934 Tarenaya hassleriana HOM05D006175 ORTHO05D008081 1.5e-52 210.3 206 54.9
Aa31LG1G13320 Aethionema arabicum HOM05D006175 ORTHO05D008081 2.6e-52 209.5 196 56.1
AT5G22110 Arabidopsis thaliana HOM05D006175 ORTHO05D008081 4.4e-52 208.8 203 56.2
EL10Ac3g05085 Beta vulgaris HOM05D006175 ORTHO05D008081 5.7e-52 208.4 197 53.8
C03p31990 Brassica napus HOM05D006175 ORTHO05D008081 9.7e-52 207.6 208 51.4
Hund09784 Selenicereus undatus HOM05D006175 ORTHO05D008081 9.7e-52 207.6 199 54.3
Prupe.5G240100 Prunus persica HOM05D006175 ORTHO05D008081 1.3e-51 207.2 205 57.1
BcaC01g04929 Brassica carinata HOM05D006175 ORTHO05D008081 1.7e-51 206.8 208 51.4
BolC3t15542H Brassica oleracea HOM05D006175 ORTHO05D008081 2.2e-51 206.5 208 51.4
Sc10g0008900 Simmondsia chinensis HOM05D006175 ORTHO05D008081 2.2e-51 206.5 208 54.8
A03p26700 Brassica napus HOM05D006175 ORTHO05D008081 2.8e-51 206.1 202 52.5
AL6G33090 Arabidopsis lyrata HOM05D006175 ORTHO05D008081 3.7e-51 205.7 203 55.7
BcaB01g03058 Brassica carinata HOM05D006175 ORTHO05D008081 1.1e-50 204.1 201 52.7
Zm00001eb037700 Zea mays HOM05D006175 ORTHO05D008081 1.4e-50 203.8 208 49.5
BraA03t11882Z Brassica rapa HOM05D006175 ORTHO05D008081 1.8e-50 203.4 205 51.2
Carub.0006s1975 Capsella rubella HOM05D006175 ORTHO05D008081 5.3e-50 201.8 201 55.7
Dinv02367 Davidia involucrata HOM05D006175 ORTHO05D008081 5.9e-49 198.4 190 56.8
HPP92_019162 Vanilla planifolia HOM05D006175 ORTHO05D008081 1.2e-44 184.1 187 51.3
SEGI_25528 Sequoiadendron giganteum HOM05D006175 ORTHO05D008081 2.6e-44 183.0 211 45.0
Lj5A165T85 Lonicera japonica HOM05D006175 ORTHO05D008081 2.2e-43 179.9 158 59.5
Cpa.g.sc103.12 Carica papaya HOM05D006175 ORTHO05D008081 8.2e-43 177.9 163 58.9
vmacro01251 Vaccinium macrocarpon HOM05D006175 ORTHO05D008081 8.2e-43 177.9 249 44.6
Os05g0160800 Oryza sativa ssp. japonica HOM05D006175 ORTHO05D008081 4.1e-42 175.6 186 48.9
MD14G1242400 Malus domestica HOM05D006175 ORTHO05D008081 1.2e-41 174.1 190 53.2
SMO089G0008 Selaginella moellendorffii HOM05D006175 ORTHO05D008081 3.5e-41 172.6 203 45.8
vmacro03513 Vaccinium macrocarpon HOM05D006175 ORTHO05D008081 3.8e-40 169.1 249 43.4
Pp3c16_3220 Physcomitrium patens HOM05D006175 ORTHO05D008081 6.1e-38 161.8 205 44.4
Ah.04g156800 Amaranthus hybridus HOM05D006175 ORTHO05D008081 3.8e-32 142.5 160 45.6
Mapoly0003s0120 Marchantia polymorpha HOM05D006175 ORTHO05D008081 5.0e-32 142.1 201 40.3
AUR62028170 Chenopodium quinoa HOM05D006175 ORTHO05D008081 1.2e-30 137.5 160 46.2
Psat6g072600 Pisum sativum HOM05D006175 ORTHO05D008081 2.1e-30 136.7 177 46.3
ATR0598G269 Amborella trichopoda HOM05D006175 ORTHO05D008081 5.7e-28 128.6 159 41.5
Ca_23674_v3 Cicer arietinum L. HOM05D006175 ORTHO05D008081 1.7e-27 127.1 125 53.6
AUR62002056 Chenopodium quinoa HOM05D006175 ORTHO05D008081 2.2e-27 126.7 173 44.5
COL.COLO4_27108 Corchorus olitorius HOM05D006175 ORTHO05D008081 4.9e-27 125.6 152 50.7
Haze_18963 Corylus avellana HOM05D006175 ORTHO05D008081 1.3e-24 117.5 150 46.0
unitig_0.g1094 Utricularia gibba HOM05D006175 ORTHO05D008081 2.9e-24 116.3 193 38.9
SMO200G0091 Selaginella moellendorffii HOM05D006175 ORTHO05D008081 3.0e-21 106.3 167 38.3
Thecc.10G092900 Theobroma cacao HOM05D006175 ORTHO05D008952 4.0e-21 105.9 133 51.1
MCO14G014 Micromonas commoda HOM05D006175 ORTHO05D008081 1.5e-20 104.0 195 31.3
AagrBONN_evm.TU.Sc2ySwM_369.495 Anthoceros agrestis HOM05D006175 ORTHO05D008081 2.0e-20 103.6 156 39.1
CSS0024377 Camellia sinensis var. sinensis HOM05D006175 ORTHO05D043346 9.5e-15 84.7 58 72.4
CDE04G3312 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 6.2e-14 82.0 98 42.9
Cre10.g424200 Chlamydomonas reinhardtii HOM05D006175 ORTHO05D008081 4.4e-12 75.9 127 33.9
TPR.G28017 Trifolium pratense HOM05D006175 ORTHO05D008081 2.4e-10 70.1 106 39.6
CDE04G3394 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 6.0e-09 65.5 107 40.2
Gohir.D04G101160 Gossypium hirsutum HOM05D006175 ORTHO05D047312 9.5e-07 58.2 56 57.1
Gorai.009G404500 Gossypium raimondii HOM05D006175 ORTHO05D047312 4.7e-06 55.8 57 52.6


User provided reference genes

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