Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G2701 Fragaria x ananassa HOM05D000849 ORTHO05D001720 1.1e-37 159.5 79 100.0
FvH4_3g25720 Fragaria vesca HOM05D000849 ORTHO05D001720 1.8e-08 62.4 38 78.9
HanXRQChr06g0174101 Helianthus annuus HOM05D000849 ORTHO05D001720 1.8e-08 62.4 48 64.6
RcHm_v2.0_Chr7g0217561 Rosa chinensis HOM05D000849 ORTHO05D001720 1.8e-08 62.4 31 96.8
FAN13G0592 Fragaria x ananassa HOM05D000849 ORTHO05D001720 2.4e-08 62.0 31 96.8
FAN21G2100 Fragaria x ananassa HOM05D000849 ORTHO05D001720 5.3e-08 60.8 30 96.7
Cc05_g01370 Coffea canephora HOM05D000849 ORTHO05D001720 6.9e-08 60.5 36 75.0
MD06G1000900 Malus domestica HOM05D000849 ORTHO05D001720 6.9e-08 60.5 31 93.5
FAN18G4354 Fragaria x ananassa HOM05D000849 ORTHO05D209366 1.5e-07 59.3 34 85.3
Gorai.005G215200 Gossypium raimondii HOM05D000849 ORTHO05D001720 1.5e-07 59.3 36 72.2
SGA_v2.0_scaffold512G52641 Striga asiatica HOM05D000849 ORTHO05D001720 1.5e-07 59.3 34 76.5
ClCG02G003150 Citrullus lanatus HOM05D000849 ORTHO05D001720 2.0e-07 58.9 37 73.0
Manes.03G096200 Manihot esculenta HOM05D000849 ORTHO05D001720 2.0e-07 58.9 31 83.9
Prupe.5G001200 Prunus persica HOM05D000849 ORTHO05D001720 2.0e-07 58.9 31 90.3
SGA_v2.0_scaffold19G08727 Striga asiatica HOM05D000849 ORTHO05D001720 2.0e-07 58.9 34 76.5
Eucgr.H05014 Eucalyptus grandis HOM05D000849 ORTHO05D001720 2.6e-07 58.5 34 76.5
Gohir.D04G150900 Gossypium hirsutum HOM05D000849 ORTHO05D001720 2.6e-07 58.5 31 83.9
Gorai.012G137500 Gossypium raimondii HOM05D000849 ORTHO05D001720 2.6e-07 58.5 31 83.9
CDE02G0865 Ceratophyllum demersum HOM05D000849 ORTHO05D001720 3.4e-07 58.2 48 60.4
Thecc.08G097600 Theobroma cacao HOM05D000849 ORTHO05D001720 3.4e-07 58.2 31 87.1
GSVIVG01013725001 Vitis vinifera HOM05D000849 ORTHO05D001720 3.4e-07 58.2 40 70.0
arahy.Tifrunner.gnm1.ann1.42ETQS Arachis hypogaea HOM05D000849 ORTHO05D001720 4.5e-07 57.8 31 83.9
arahy.Tifrunner.gnm1.ann1.GTH68H Arachis hypogaea HOM05D000849 ORTHO05D001720 4.5e-07 57.8 31 83.9
Duzib052G0443 Durio zibethinus HOM05D000849 ORTHO05D001720 4.5e-07 57.8 31 80.6
ECA246G0874 Erigeron canadensis HOM05D000849 ORTHO05D001720 4.5e-07 57.8 31 83.9
FAN27G2208 Fragaria x ananassa HOM05D000849 ORTHO05D001720 4.5e-07 57.8 36 69.4
HanXRQChr13g0411551 Helianthus annuus HOM05D000849 ORTHO05D001720 4.5e-07 57.8 31 83.9
HanXRQChr17g0538611 Helianthus annuus HOM05D000849 ORTHO05D001720 4.5e-07 57.8 31 83.9
Lalb_Chr17g0347551 Lupinus albus HOM05D000849 ORTHO05D001720 4.5e-07 57.8 31 83.9
Psat2g022240 Pisum sativum HOM05D000849 ORTHO05D001720 4.5e-07 57.8 31 83.9
Sed0002292 Sechium edule HOM05D000849 ORTHO05D001720 4.5e-07 57.8 31 83.9
HPP92_016956 Vanilla planifolia HOM05D000849 ORTHO05D001720 4.5e-07 57.8 31 83.9
Duzib116G0219 Durio zibethinus HOM05D000849 ORTHO05D001720 5.8e-07 57.4 33 81.8
Gohir.A04G110600 Gossypium hirsutum HOM05D000849 ORTHO05D001720 5.8e-07 57.4 31 80.6
Lj5A169T99 Lonicera japonica HOM05D000849 ORTHO05D001720 5.8e-07 57.4 31 80.6
Phvul.008G207100 Phaseolus vulgaris HOM05D000849 ORTHO05D001720 5.8e-07 57.4 31 80.6
QL02p016289 Quercus lobata HOM05D000849 ORTHO05D001720 5.8e-07 57.4 31 87.1
GSVIVG01028912001 Vitis vinifera HOM05D000849 ORTHO05D001720 5.8e-07 57.4 32 78.1
AL3G50260 Arabidopsis lyrata HOM05D000849 ORTHO05D001720 7.6e-07 57.0 31 83.9
AT2G17380 Arabidopsis thaliana HOM05D000849 ORTHO05D001720 7.6e-07 57.0 31 83.9
AT4G35410 Arabidopsis thaliana HOM05D000849 ORTHO05D001720 7.6e-07 57.0 31 83.9
BcaB03g16498 Brassica carinata HOM05D000849 ORTHO05D001720 7.6e-07 57.0 31 83.9
BcaNung00596 Brassica carinata HOM05D000849 ORTHO05D001720 7.6e-07 57.0 31 83.9
BcaNung03625 Brassica carinata HOM05D000849 ORTHO05D001720 7.6e-07 57.0 31 83.9
A07p03690 Brassica napus HOM05D000849 ORTHO05D001720 7.6e-07 57.0 31 83.9
Carub.0003s3143 Capsella rubella HOM05D000849 ORTHO05D001720 7.6e-07 57.0 31 83.9
CARHR107540 Cardamine hirsuta HOM05D000849 ORTHO05D001720 7.6e-07 57.0 31 83.9
CARHR243730 Cardamine hirsuta HOM05D000849 ORTHO05D001720 7.6e-07 57.0 31 83.9
DCAR_009850 Daucus carota HOM05D000370 ORTHO05D001720 7.6e-07 57.0 33 75.8
Thhalv10022887m.g Eutrema salsugineum HOM05D000849 ORTHO05D001720 7.6e-07 57.0 31 83.9
Thhalv10026443m.g Eutrema salsugineum HOM05D000849 ORTHO05D001720 7.6e-07 57.0 31 83.9
PGR042G3172 Punica granatum HOM05D000849 ORTHO05D001720 7.6e-07 57.0 31 80.6
Sp3g30690 Schrenkiella parvula HOM05D000849 ORTHO05D001720 7.6e-07 57.0 31 83.9
Sp7g33190 Schrenkiella parvula HOM05D000849 ORTHO05D001720 7.6e-07 57.0 31 83.9
THA.LOC104819702 Tarenaya hassleriana HOM05D000849 ORTHO05D001720 7.6e-07 57.0 31 83.9
HPP92_011376 Vanilla planifolia HOM05D000849 ORTHO05D001720 7.6e-07 57.0 31 83.9
Actinidia23317 Actinidia chinensis HOM05D000849 ORTHO05D001720 9.9e-07 56.6 31 80.6
Actinidia25666 Actinidia chinensis HOM05D000849 ORTHO05D001720 9.9e-07 56.6 31 80.6
ATR1125G029 Amborella trichopoda HOM05D000849 ORTHO05D001720 9.9e-07 56.6 31 80.6
Aqoxy4G00621 Aquilegia oxysepala HOM05D000849 ORTHO05D001720 9.9e-07 56.6 31 80.6
arahy.Tifrunner.gnm1.ann1.VM96MN Arachis hypogaea HOM05D000849 ORTHO05D001720 9.9e-07 56.6 31 80.6
arahy.Tifrunner.gnm1.ann1.ZAN4A4 Arachis hypogaea HOM05D000849 ORTHO05D001720 9.9e-07 56.6 31 80.6
MSTRG.22066 Avicennia marina HOM05D000849 ORTHO05D001720 9.9e-07 56.6 31 80.6
MSTRG.24532 Avicennia marina HOM05D000849 ORTHO05D001720 9.9e-07 56.6 31 80.6
CANSAT25G0185 Cannabis sativa HOM05D000849 ORTHO05D001720 9.9e-07 56.6 31 80.6
CiPaw.06G113000 Carya illinoinensis HOM05D000849 ORTHO05D001720 9.9e-07 56.6 31 80.6
CDE11G0456 Ceratophyllum demersum HOM05D000849 ORTHO05D001720 9.9e-07 56.6 31 80.6
CBR_g38774 Chara braunii HOM05D000849 ORTHO05D001720 9.9e-07 56.6 31 80.6
Ca_16257_v3 Cicer arietinum L. HOM05D000849 ORTHO05D001720 9.9e-07 56.6 31 80.6
Ca_20342_v3 Cicer arietinum L. HOM05D000849 ORTHO05D001720 9.9e-07 56.6 31 80.6
Ciclev10029448m.g Citrus clementina HOM05D000849 ORTHO05D001720 9.9e-07 56.6 31 80.6
Duzib132G0319 Durio zibethinus HOM05D000849 ORTHO05D001720 9.9e-07 56.6 31 80.6
Eucgr.J01103 Eucalyptus grandis HOM05D000849 ORTHO05D001720 9.9e-07 56.6 31 80.6
Gohir.A03G169200 Gossypium hirsutum HOM05D000849 ORTHO05D001720 9.9e-07 56.6 31 80.6
Gohir.A12G012100 Gossypium hirsutum HOM05D000849 ORTHO05D001720 9.9e-07 56.6 31 80.6
Gohir.D02G192400 Gossypium hirsutum HOM05D000849 ORTHO05D001720 9.9e-07 56.6 31 80.6
Gohir.D12G012500 Gossypium hirsutum HOM05D000849 ORTHO05D001720 9.9e-07 56.6 31 80.6
Gorai.008G012700 Gossypium raimondii HOM05D000849 ORTHO05D001720 9.9e-07 56.6 31 80.6
LjContig00564g0009090 Lotus japonicus HOM05D000849 ORTHO05D001720 9.9e-07 56.6 51 56.9
Lalb_Chr04g0247021 Lupinus albus HOM05D000849 ORTHO05D001720 9.9e-07 56.6 31 80.6
Manes.15G112700 Manihot esculenta HOM05D000849 ORTHO05D001720 9.9e-07 56.6 31 80.6
Medtr5g087820 Medicago truncatula HOM05D000849 ORTHO05D001720 9.9e-07 56.6 31 80.6
Medtr5g098940 Medicago truncatula HOM05D000849 ORTHO05D001720 9.9e-07 56.6 31 80.6
Nitab4.5_0000320g0160 Nicotiana tabacum HOM05D000849 ORTHO05D001720 9.9e-07 56.6 34 73.5
Nitab4.5_0003414g0010 Nicotiana tabacum HOM05D000849 ORTHO05D001720 9.9e-07 56.6 34 73.5
Oeu013504.1 Olea europaea HOM05D000849 ORTHO05D001720 9.9e-07 56.6 31 80.6
PSO017G6221 Papaver somniferum HOM05D000849 ORTHO05D001720 9.9e-07 56.6 31 80.6
PSO170G0858 Papaver somniferum HOM05D000849 ORTHO05D001720 9.9e-07 56.6 31 80.6
Psat2g001600 Pisum sativum HOM05D000100 ORTHO05D000052 9.9e-07 56.6 31 80.6
PGR083G0483 Punica granatum HOM05D000849 ORTHO05D001720 9.9e-07 56.6 31 80.6
Solyc11g005220.2 Solanum lycopersicum HOM05D000849 ORTHO05D001720 9.9e-07 56.6 31 80.6
Sopen11g001230 Solanum pennellii HOM05D000849 ORTHO05D001720 9.9e-07 56.6 31 80.6
Thecc.02G149500 Theobroma cacao HOM05D000849 ORTHO05D001720 9.9e-07 56.6 31 80.6
TPR.G33429 Trifolium pratense HOM05D000849 ORTHO05D001720 9.9e-07 56.6 31 80.6
TWI75G1792 Tripterygium wilfordii HOM05D000849 ORTHO05D001720 9.9e-07 56.6 31 80.6
TAR381G1503 Trochodendron aralioides HOM05D000849 ORTHO05D001720 9.9e-07 56.6 31 80.6
A01p03160 Brassica napus HOM05D000849 ORTHO05D001720 1.3e-06 56.2 57 54.4
BraA01t00301Z Brassica rapa HOM05D000849 ORTHO05D001720 1.3e-06 56.2 57 54.4
Rhsim06G0099200 Rhododendron simsii HOM05D000849 ORTHO05D001720 1.3e-06 56.2 38 63.2
CDE06G2687 Ceratophyllum demersum HOM05D000849 ORTHO05D001720 1.7e-06 55.8 31 80.6
Glyma.02G274700 Glycine max HOM05D000849 ORTHO05D001720 1.7e-06 55.8 31 80.6
Lalb_Chr04g0249681 Lupinus albus HOM05D000849 ORTHO05D001720 1.7e-06 55.8 31 80.6
Sc08g0001810 Simmondsia chinensis HOM05D000849 ORTHO05D001720 1.7e-06 55.8 31 77.4
unitig_699.g19462 Utricularia gibba HOM05D000849 ORTHO05D001720 1.7e-06 55.8 31 80.6
Actinidia29424 Actinidia chinensis HOM05D000849 ORTHO05D001720 2.2e-06 55.5 31 77.4
Aa31LG6G12400 Aethionema arabicum HOM05D000849 ORTHO05D001720 2.2e-06 55.5 30 83.3
BcaC06g36265 Brassica carinata HOM05D000849 ORTHO05D001720 2.2e-06 55.5 30 83.3
C01p03510 Brassica napus HOM05D000849 ORTHO05D001720 2.2e-06 55.5 30 83.3
C07p05910 Brassica napus HOM05D000849 ORTHO05D001720 2.2e-06 55.5 30 83.3
BolC1t00340H Brassica oleracea HOM05D000849 ORTHO05D001720 2.2e-06 55.5 30 83.3
BolC7t40998H Brassica oleracea HOM05D000849 ORTHO05D001720 2.2e-06 55.5 30 83.3
BraA07t28155Z Brassica rapa HOM05D000849 ORTHO05D001720 2.2e-06 55.5 30 83.3
CSS0014943 Camellia sinensis var. sinensis HOM05D000849 ORTHO05D001720 2.2e-06 55.5 31 77.4
CSS0040653 Camellia sinensis var. sinensis HOM05D000849 ORTHO05D001720 2.2e-06 55.5 31 77.4
Cpa.g.sc36.99 Carica papaya HOM05D000849 ORTHO05D001720 2.2e-06 55.5 31 80.6
CiPaw.05G095900 Carya illinoinensis HOM05D000849 ORTHO05D001720 2.2e-06 55.5 31 77.4
Dinv28600 Davidia involucrata HOM05D000849 ORTHO05D001720 2.2e-06 55.5 31 77.4
Migut.N03002 Erythranthe guttata HOM05D000849 ORTHO05D001720 2.2e-06 55.5 31 77.4
Lsat_1_v5_gn_6_15600 Lactuca sativa HOM05D000849 ORTHO05D001720 2.2e-06 55.5 30 83.3
MD10G1145000 Malus domestica HOM05D000849 ORTHO05D001720 2.2e-06 55.5 31 77.4
Peaxi162Scf01732g00027 Petunia axillaris HOM05D000849 ORTHO05D001720 2.2e-06 55.5 31 77.4
Pp3c26_15020 Physcomitrium patens HOM05D000849 ORTHO05D001720 2.2e-06 55.5 31 77.4
Pp3c4_27730 Physcomitrium patens HOM05D000849 ORTHO05D001720 2.2e-06 55.5 31 77.4
QL11p057031 Quercus lobata HOM05D000849 ORTHO05D001720 2.2e-06 55.5 31 77.4
SalBow6G0558 Salvia bowleyana HOM05D000849 ORTHO05D001720 2.2e-06 55.5 31 77.4
Hund06346 Selenicereus undatus HOM05D000849 ORTHO05D001720 2.2e-06 55.5 41 63.4
PGSC0003DMG402006035 Solanum tuberosum HOM05D000849 ORTHO05D001720 2.2e-06 55.5 31 77.4
TWI79G1396 Tripterygium wilfordii HOM05D000849 ORTHO05D001720 2.2e-06 55.5 31 77.4
CsaV3_7G002260 Cucumis sativus L. HOM05D000849 ORTHO05D001720 2.9e-06 55.1 30 80.0
Eucgr.J00771 Eucalyptus grandis HOM05D000849 ORTHO05D001720 2.9e-06 55.1 31 77.4
Glyma.13G004600 Glycine max HOM05D000849 ORTHO05D001720 2.9e-06 55.1 31 80.6
Glyma.20G063200 Glycine max HOM05D000849 ORTHO05D001720 2.9e-06 55.1 31 80.6
Lsat_1_v5_gn_3_25480 Lactuca sativa HOM05D000849 ORTHO05D001720 2.9e-06 55.1 31 77.4
Nn5g30615 Nelumbo nucifera HOM05D000849 ORTHO05D001720 2.9e-06 55.1 30 80.0
Phvul.006G003200 Phaseolus vulgaris HOM05D000849 ORTHO05D001720 2.9e-06 55.1 31 80.6
Rhsim11G0061600 Rhododendron simsii HOM05D000849 ORTHO05D001720 2.9e-06 55.1 31 80.6
Rhsim11G0063100 Rhododendron simsii HOM05D000849 ORTHO05D001720 2.9e-06 55.1 31 80.6
TWI38G1500 Tripterygium wilfordii HOM05D000849 ORTHO05D001720 2.9e-06 55.1 31 83.9
TAR625G0387 Trochodendron aralioides HOM05D000849 ORTHO05D001720 2.9e-06 55.1 30 80.0
vmacro00780 Vaccinium macrocarpon HOM05D000849 ORTHO05D001720 2.9e-06 55.1 31 80.6
VMungo0647G1505 Vigna mungo HOM05D000849 ORTHO05D001720 2.9e-06 55.1 30 80.0
AagrBONN_evm.TU.Sc2ySwM_228.1184 Anthoceros agrestis HOM05D000849 ORTHO05D001720 3.8e-06 54.7 31 80.6
MBI03_g24045_MAGBIO Magnolia biondii HOM05D000849 ORTHO05D001720 3.8e-06 54.7 30 76.7
Os03g0811300 Oryza sativa ssp. japonica HOM05D000849 ORTHO05D001720 3.8e-06 54.7 31 77.4
Dinv34890 Davidia involucrata HOM05D000849 ORTHO05D001720 4.9e-06 54.3 32 71.9
Duzib248G1189 Durio zibethinus HOM05D000849 ORTHO05D001720 4.9e-06 54.3 31 77.4
MBI06_g26876_MAGBIO Magnolia biondii HOM05D000849 ORTHO05D001720 4.9e-06 54.3 30 80.0
Aqoxy5G00937 Aquilegia oxysepala HOM05D000849 ORTHO05D001720 6.4e-06 53.9 30 76.7
CSS0045114 Camellia sinensis var. sinensis HOM05D000849 ORTHO05D001720 6.4e-06 53.9 30 76.7
CAN.G557.8 Capsicum annuum HOM05D000849 ORTHO05D001720 6.4e-06 53.9 30 76.7
Cc11_g06430 Coffea canephora HOM05D000849 ORTHO05D001720 6.4e-06 53.9 34 70.6
Haze_02473 Corylus avellana HOM05D000849 ORTHO05D001720 6.4e-06 53.9 37 64.9
Manes.02G210500 Manihot esculenta HOM05D000849 ORTHO05D001720 6.4e-06 53.9 30 76.7
Mapoly0002s0129 Marchantia polymorpha HOM05D000849 ORTHO05D001720 6.4e-06 53.9 30 76.7
Hund00104 Selenicereus undatus HOM05D006755 ORTHO05D001720 6.4e-06 53.9 32 71.9
PGSC0003DMG401006035 Solanum tuberosum HOM05D000849 ORTHO05D001720 6.4e-06 53.9 30 76.7
Lsat_1_v5_gn_5_61200 Lactuca sativa HOM05D000849 ORTHO05D001720 8.4e-06 53.5 31 77.4
MD05G1145600 Malus domestica HOM05D000849 ORTHO05D001720 8.4e-06 53.5 31 77.4
Potri.012G052000 Populus trichocarpa HOM05D000849 ORTHO05D001720 8.4e-06 53.5 31 77.4
Sabra12G0035900 Salix brachista HOM05D000849 ORTHO05D001720 8.4e-06 53.5 31 77.4
Sabra14G0057200 Salix brachista HOM05D000849 ORTHO05D001720 8.4e-06 53.5 31 77.4
SEGI_24360 Sequoiadendron giganteum HOM05D000849 ORTHO05D001720 8.4e-06 53.5 30 80.0


User provided reference genes

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