Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G2456 Fragaria x ananassa HOM05D006271 ORTHO05D008237 1.2e-176 623.2 370 100.0
FAN04G1993 Fragaria x ananassa HOM05D006271 ORTHO05D008237 4.3e-169 598.2 370 94.9
FAN13G0829 Fragaria x ananassa HOM05D006271 ORTHO05D008237 5.5e-140 501.5 370 85.9
FAN18G4385 Fragaria x ananassa HOM05D006271 ORTHO05D008237 2.1e-139 499.6 370 85.7
RcHm_v2.0_Chr6g0268191 Rosa chinensis HOM05D006271 ORTHO05D008237 1.3e-120 437.2 366 77.3
FvH4_5g27270 Fragaria vesca HOM05D006271 ORTHO05D008237 3.7e-96 355.9 246 83.3
MD03G1058300 Malus domestica HOM05D006271 ORTHO05D008237 8.3e-80 301.6 323 58.2
MD11G1060500 Malus domestica HOM05D006271 ORTHO05D008237 8.3e-80 301.6 315 58.1
Cfa011797 Carpinus fangiana HOM05D006271 ORTHO05D008237 1.9e-76 290.4 303 57.8
Haze_24435 Corylus avellana HOM05D006271 ORTHO05D008237 4.3e-76 289.3 303 57.8
Prupe.6G045300 Prunus persica HOM05D006271 ORTHO05D008237 7.3e-76 288.5 307 60.3
Ciclev10001595m.g Citrus clementina HOM05D006271 ORTHO05D008237 8.1e-75 285.0 304 57.2
TWI79G1094 Tripterygium wilfordii HOM05D006271 ORTHO05D008237 1.5e-73 280.8 314 54.5
Atru.chr5.2170 Acer truncatum HOM05D006271 ORTHO05D008237 4.9e-72 275.8 293 55.6
CiPaw.13G067000 Carya illinoinensis HOM05D006271 ORTHO05D008237 6.4e-72 275.4 307 54.4
TAR369G0029 Trochodendron aralioides HOM05D006271 ORTHO05D008237 7.1e-71 271.9 317 53.9
GSVIVG01024608001 Vitis vinifera HOM05D006271 ORTHO05D008237 7.1e-71 271.9 315 54.6
Cpa.g.c32708 Carica papaya HOM05D006271 ORTHO05D008237 2.1e-70 270.4 314 53.2
CANSAT11G2184 Cannabis sativa HOM05D006271 ORTHO05D008237 5.1e-69 265.8 309 54.4
ClCG08G003170 Citrullus lanatus HOM05D006271 ORTHO05D008237 6.6e-69 265.4 308 51.6
CsaV3_7G022840 Cucumis sativus L. HOM05D006271 ORTHO05D008237 4.3e-68 262.7 307 51.1
Duzib168G1576 Durio zibethinus HOM05D006271 ORTHO05D008237 2.8e-67 260.0 305 53.4
THA.LOC104800763 Tarenaya hassleriana HOM05D006271 ORTHO05D008237 6.2e-67 258.8 304 51.3
Glyma.19G024000 Glycine max HOM05D006271 ORTHO05D008237 8.1e-67 258.5 318 51.9
Eucgr.K01366 Eucalyptus grandis HOM05D006271 ORTHO05D008237 2.3e-66 256.9 312 51.9
TAR633G1937 Trochodendron aralioides HOM05D006271 ORTHO05D008237 6.8e-66 255.4 328 50.0
Hma1.2p1_0613F.1_g189190 Hydrangea macrophylla HOM05D006271 ORTHO05D008237 8.9e-66 255.0 322 54.0
Medtr7g033700 Medicago truncatula HOM05D006271 ORTHO05D008237 9.9e-65 251.5 308 49.4
CSS0050408 Camellia sinensis var. sinensis HOM05D006271 ORTHO05D008237 2.2e-64 250.4 321 49.5
Ca_26670_v3 Cicer arietinum L. HOM05D006271 ORTHO05D008237 2.9e-64 250.0 301 51.5
Carub.0008s0813 Capsella rubella HOM05D006271 ORTHO05D008237 6.4e-64 248.8 315 50.2
arahy.Tifrunner.gnm1.ann1.4PY88X Arachis hypogaea HOM05D006271 ORTHO05D008237 1.1e-63 248.1 297 51.9
Lsat_1_v5_gn_9_14460 Lactuca sativa HOM05D006271 ORTHO05D008237 1.1e-63 248.1 309 50.8
Aqoxy4G02154 Aquilegia oxysepala HOM05D006271 ORTHO05D008237 1.4e-63 247.7 323 50.2
Cc01_g15040 Coffea canephora HOM05D006271 ORTHO05D008237 1.4e-63 247.7 316 50.0
arahy.Tifrunner.gnm1.ann1.0DE1FL Arachis hypogaea HOM05D006271 ORTHO05D008237 1.9e-63 247.3 307 51.1
Thhalv10016851m.g Eutrema salsugineum HOM05D006271 ORTHO05D008237 3.2e-63 246.5 305 51.5
Oeu032478.1 Olea europaea HOM05D006271 ORTHO05D008237 9.2e-63 245.0 340 46.8
Nitab4.5_0003270g0040 Nicotiana tabacum HOM05D006271 ORTHO05D008237 1.2e-62 244.6 307 52.8
HanXRQChr08g0228551 Helianthus annuus HOM05D006271 ORTHO05D008237 1.6e-62 244.2 308 50.6
AT2G30280 Arabidopsis thaliana HOM05D006271 ORTHO05D008237 2.7e-62 243.4 304 50.7
AL4G25130 Arabidopsis lyrata HOM05D006271 ORTHO05D008237 4.6e-62 242.7 315 49.8
BraA05t20437Z Brassica rapa HOM05D006271 ORTHO05D008237 4.6e-62 242.7 320 49.4
Manes.12G056300 Manihot esculenta HOM05D006271 ORTHO05D008237 1.3e-61 241.1 315 51.1
COL.COLO4_11178 Corchorus olitorius HOM05D006271 ORTHO05D008237 3.9e-61 239.6 262 55.7
Aa31LG5G6440 Aethionema arabicum HOM05D006271 ORTHO05D008237 6.6e-61 238.8 302 51.0
Rhsim13G0062500 Rhododendron simsii HOM05D006271 ORTHO05D008237 1.1e-60 238.0 318 49.1
Thecc.09G360000 Theobroma cacao HOM05D006271 ORTHO05D008237 1.1e-60 238.0 304 51.0
A05p15180 Brassica napus HOM05D006271 ORTHO05D008237 1.5e-60 237.7 307 50.5
Sopen06g033780 Solanum pennellii HOM05D006271 ORTHO05D008237 3.3e-60 236.5 307 50.2
CAN.G1095.29 Capsicum annuum HOM05D006271 ORTHO05D008237 4.3e-60 236.1 317 48.3
Gorai.003G151300 Gossypium raimondii HOM05D006271 ORTHO05D008237 4.3e-60 236.1 286 53.1
Sp4g12860 Schrenkiella parvula HOM05D006271 ORTHO05D008237 5.6e-60 235.7 315 48.9
Phvul.008G153700 Phaseolus vulgaris HOM05D006271 ORTHO05D008237 9.6e-60 235.0 294 50.7
Potri.019G126500 Populus trichocarpa HOM05D006271 ORTHO05D008237 1.2e-59 234.6 316 47.8
Sabra19G0124300 Salix brachista HOM05D006271 ORTHO05D008237 1.2e-59 234.6 319 47.3
CSS0007493 Camellia sinensis var. sinensis HOM05D006271 ORTHO05D008237 2.1e-59 233.8 298 50.0
CARHR123600 Cardamine hirsuta HOM05D006271 ORTHO05D008237 2.8e-59 233.4 317 47.9
Sc21g0004890 Simmondsia chinensis HOM05D006271 ORTHO05D008237 2.8e-59 233.4 384 48.2
VMungo0464G0054 Vigna mungo HOM05D006271 ORTHO05D008237 3.6e-59 233.0 306 49.3
Nitab4.5_0002768g0040 Nicotiana tabacum HOM05D006271 ORTHO05D008237 8.1e-59 231.9 307 51.1
Sabra19G0130300 Salix brachista HOM05D006271 ORTHO05D008237 1.1e-58 231.5 314 47.5
DCAR_018792 Daucus carota HOM05D006271 ORTHO05D008237 1.4e-58 231.1 312 46.8
Gohir.D03G144000 Gossypium hirsutum HOM05D006271 ORTHO05D008237 1.8e-58 230.7 282 52.8
Medtr8g063090 Medicago truncatula HOM05D006271 ORTHO05D008237 1.8e-58 230.7 293 48.8
Sed0013584 Sechium edule HOM05D006271 ORTHO05D008237 5.2e-58 229.2 295 48.5
Gohir.A03G024500 Gossypium hirsutum HOM05D006271 ORTHO05D008237 1.5e-57 227.6 282 52.1
TPR.G1139 Trifolium pratense HOM05D006271 ORTHO05D008237 3.4e-57 226.5 280 50.0
Hund18965 Selenicereus undatus HOM05D006271 ORTHO05D008237 7.6e-57 225.3 315 47.3
EL10Ac7g15870 Beta vulgaris HOM05D006271 ORTHO05D008237 1.3e-56 224.6 310 47.4
PGSC0003DMG400030380 Solanum tuberosum HOM05D006271 ORTHO05D008237 1.7e-56 224.2 325 46.5
Lalb_Chr22g0360771 Lupinus albus HOM05D006271 ORTHO05D008237 2.2e-56 223.8 294 47.3
PGR004G1333 Punica granatum HOM05D006271 ORTHO05D008237 2.2e-56 223.8 302 49.3
BcaB02g10312 Brassica carinata HOM05D006271 ORTHO05D008237 2.9e-56 223.4 297 48.8
Psat6g224880 Pisum sativum HOM05D006271 ORTHO05D008237 2.9e-56 223.4 310 45.8
BcaC02g11116 Brassica carinata HOM05D006271 ORTHO05D008237 4.9e-56 222.6 289 50.5
ECA247G1693 Erigeron canadensis HOM05D006271 ORTHO05D008237 1.1e-55 221.5 303 48.2
CSS0039557 Camellia sinensis var. sinensis HOM05D006271 ORTHO05D008237 4.2e-55 219.5 307 48.2
Lj1g0015465 Lotus japonicus HOM05D006271 ORTHO05D008237 2.7e-54 216.9 278 50.4
C04p20240 Brassica napus HOM05D006271 ORTHO05D008237 7.8e-54 215.3 240 55.4
PSO170G5827 Papaver somniferum HOM05D006271 ORTHO05D008237 1.0e-53 214.9 316 44.6
SGA_v2.0_scaffold77G25374 Striga asiatica HOM05D006271 ORTHO05D008237 1.7e-53 214.2 280 47.9
BolC4t23562H Brassica oleracea HOM05D006271 ORTHO05D008237 2.3e-53 213.8 294 48.3
PSO017G5241 Papaver somniferum HOM05D006271 ORTHO05D008237 1.1e-52 211.5 319 43.9
QL01p025615 Quercus lobata HOM05D006271 ORTHO05D008237 7.3e-52 208.8 513 33.9
MBI15_g26246_MAGBIO Magnolia biondii HOM05D006271 ORTHO05D008237 9.6e-52 208.4 307 45.6
Dinv12252 Davidia involucrata HOM05D006271 ORTHO05D008237 1.2e-49 201.4 232 53.9
Actinidia23186 Actinidia chinensis HOM05D006271 ORTHO05D008237 2.0e-49 200.7 304 47.7
unitig_60.g25562 Utricularia gibba HOM05D006271 ORTHO05D008237 2.0e-49 200.7 305 44.6
ATR0681G348 Amborella trichopoda HOM05D006727 ORTHO05D008408 4.4e-49 199.5 313 44.7
Medtr7g033685 Medicago truncatula HOM05D006271 ORTHO05D008237 3.8e-48 196.4 291 45.0
SalBow2G1290 Salvia bowleyana HOM05D006271 ORTHO05D008237 3.2e-47 193.4 359 38.2
vmacro02904 Vaccinium macrocarpon HOM05D006271 ORTHO05D008237 4.2e-47 193.0 248 49.6
THA.LOC104800777 Tarenaya hassleriana HOM05D006271 ORTHO05D008237 9.3e-47 191.8 306 44.4
Peaxi162Scf00390g00528 Petunia axillaris HOM05D006271 ORTHO05D008237 3.5e-46 189.9 248 49.2
Migut.N00750 Erythranthe guttata HOM05D006271 ORTHO05D008237 6.0e-46 189.1 313 43.1
Dinv44551 Davidia involucrata HOM05D006271 ORTHO05D008237 4.3e-44 183.0 173 59.0
QL01p025639 Quercus lobata HOM05D006271 ORTHO05D008237 5.6e-44 182.6 155 62.6
Lj1g0018317 Lotus japonicus HOM05D006271 ORTHO05D008237 1.6e-43 181.0 365 37.8
PSO339G2991 Papaver somniferum HOM05D006271 ORTHO05D008237 8.1e-43 178.7 344 38.1
HPP92_015428 Vanilla planifolia HOM05D006271 ORTHO05D008237 1.8e-42 177.6 304 40.5
Os12g0110300 Oryza sativa ssp. japonica HOM05D006271 ORTHO05D008237 1.5e-41 174.5 318 39.3
TPR.G1080 Trifolium pratense HOM05D006271 ORTHO05D008237 9.9e-41 171.8 255 43.1
AUR62036230 Chenopodium quinoa HOM05D006271 ORTHO05D008237 2.9e-40 170.2 250 44.4
AUR62009716 Chenopodium quinoa HOM05D006271 ORTHO05D008237 6.4e-40 169.1 291 42.6
Os11g0110066 Oryza sativa ssp. japonica HOM05D006271 ORTHO05D008237 1.1e-39 168.3 318 38.7
Nn2g11075 Nelumbo nucifera HOM05D006271 ORTHO05D008237 3.2e-39 166.8 251 45.0
CDE04G1879 Ceratophyllum demersum HOM05D006271 ORTHO05D008237 3.3e-36 156.8 225 42.7
Ah.07g202380 Amaranthus hybridus HOM05D006271 ORTHO05D008237 1.2e-33 148.3 212 47.2
SEGI_17267 Sequoiadendron giganteum HOM05D006271 ORTHO05D008237 1.9e-28 131.0 249 39.4
SHI19233 Sapria himalayana HOM05D006271 ORTHO05D008237 1.2e-25 121.7 181 43.1
unitig_60.g25741 Utricularia gibba HOM05D006271 ORTHO05D008237 1.7e-24 117.9 238 31.9
Zm00001eb404980 Zea mays HOM05D006271 ORTHO05D008237 2.9e-24 117.1 200 40.0
AagrBONN_evm.TU.Sc2ySwM_344.4002 Anthoceros agrestis HOM05D006271 ORTHO05D008237 6.1e-22 109.4 326 33.7
Pp3c12_13690 Physcomitrium patens HOM05D006271 ORTHO05D008237 1.3e-21 108.2 269 33.8
Ah.07g202370 Amaranthus hybridus HOM05D006271 ORTHO05D000898 4.6e-14 83.2 108 50.0
BcaB06g28355 Brassica carinata HOM05D006271 ORTHO05D008237 1.5e-12 78.2 101 46.5
PSO384G0354 Papaver somniferum HOM05D006271 ORTHO05D008237 1.5e-12 78.2 91 54.9
Mapoly0055s0007 Marchantia polymorpha HOM05D006271 ORTHO05D008237 4.3e-12 76.6 322 31.1
BolC4t27428H Brassica oleracea HOM05D006271 ORTHO05D023853 1.4e-10 71.6 230 36.5
C04p59170 Brassica napus HOM05D006271 ORTHO05D023853 5.3e-10 69.7 230 36.1


User provided reference genes

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