Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G2416 Fragaria x ananassa HOM05D003766 ORTHO05D004607 0.0e+00 1142.1 683 100.0
FAN13G1632 Fragaria x ananassa HOM05D003766 ORTHO05D004607 8.2e-299 1030.0 683 89.8
FvH4_5g17420 Fragaria vesca HOM05D003766 ORTHO05D004607 1.9e-295 1018.8 683 92.1
FAN18G4514 Fragaria x ananassa HOM05D003766 ORTHO05D004607 2.7e-294 1015.0 683 91.9
FAN04G2446 Fragaria x ananassa HOM05D003766 ORTHO05D004607 4.6e-294 1014.2 683 91.8
RcHm_v2.0_Chr7g0178271 Rosa chinensis HOM05D003766 ORTHO05D004607 1.3e-275 953.0 721 76.1
Prupe.5G234000 Prunus persica HOM05D003766 ORTHO05D004607 1.8e-250 869.4 679 79.5
MD14G1236800 Malus domestica HOM05D003766 ORTHO05D004607 1.6e-246 856.3 677 78.9
Haze_18860 Corylus avellana HOM05D003766 ORTHO05D004607 8.3e-227 790.8 686 74.3
Cfa019652 Carpinus fangiana HOM05D003766 ORTHO05D004607 1.9e-226 789.6 686 74.1
Glyma.08G054900 Glycine max HOM05D003766 ORTHO05D004607 6.6e-224 781.2 676 73.2
TPR.G1449 Trifolium pratense HOM05D003766 ORTHO05D004607 2.5e-223 779.2 678 73.2
CSS0048248 Camellia sinensis var. sinensis HOM05D003766 ORTHO05D004607 1.7e-219 766.5 679 72.0
Atru.chr9.1710 Acer truncatum HOM05D003766 ORTHO05D004607 2.8e-214 749.2 679 72.2
Manes.06G005800 Manihot esculenta HOM05D003766 ORTHO05D004607 1.4e-213 746.9 682 72.1
arahy.Tifrunner.gnm1.ann1.679W5T Arachis hypogaea HOM05D003766 ORTHO05D004607 2.0e-212 743.0 678 71.4
Lalb_Chr09g0330351 Lupinus albus HOM05D003766 ORTHO05D004607 7.6e-212 741.1 680 70.6
VMungo0251G1288 Vigna mungo HOM05D003766 ORTHO05D004607 2.9e-211 739.2 675 71.9
TWI81G0458 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 8.4e-211 737.6 684 69.7
Thecc.03G055500 Theobroma cacao HOM05D003766 ORTHO05D004607 3.2e-210 735.7 679 70.0
Nn3g18290 Nelumbo nucifera HOM05D003766 ORTHO05D004607 5.4e-210 734.9 680 71.3
Duzib068G0750 Durio zibethinus HOM05D003766 ORTHO05D004607 9.3e-210 734.2 678 70.4
Dinv04134 Davidia involucrata HOM05D003766 ORTHO05D004607 1.2e-209 733.8 631 74.8
Lalb_Chr05g0221621 Lupinus albus HOM05D003766 ORTHO05D004607 6.0e-209 731.5 682 69.4
QL10p029803 Quercus lobata HOM05D003766 ORTHO05D004607 1.0e-208 730.7 691 71.8
Actinidia09075 Actinidia chinensis HOM05D003766 ORTHO05D004607 3.0e-208 729.2 685 66.6
MBI19_g04409_MAGBIO Magnolia biondii HOM05D003766 ORTHO05D004607 8.7e-208 727.6 675 65.9
Medtr8g107400 Medicago truncatula HOM05D003766 ORTHO05D004607 8.7e-208 727.6 688 69.9
Ciclev10007659m.g Citrus clementina HOM05D003766 ORTHO05D004607 3.3e-207 725.7 675 66.8
GSVIVG01008448001 Vitis vinifera HOM05D003766 ORTHO05D004607 7.3e-207 724.5 577 75.4
TWI60G0360 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 2.1e-206 723.0 688 66.9
arahy.Tifrunner.gnm1.ann1.G74QKM Arachis hypogaea HOM05D003766 ORTHO05D004607 4.8e-206 721.8 704 68.3
Ca_17184_v3 Cicer arietinum L. HOM05D003766 ORTHO05D004607 8.1e-206 721.1 676 69.7
Cpa.g.sc3.393 Carica papaya HOM05D003766 ORTHO05D004607 4.0e-205 718.8 686 67.1
Eucgr.B00997 Eucalyptus grandis HOM05D003766 ORTHO05D004607 6.9e-205 718.0 679 67.0
EL10Ac8g19505 Beta vulgaris HOM05D003766 ORTHO05D004607 1.5e-204 716.8 676 70.0
Sc10g0009160 Simmondsia chinensis HOM05D003766 ORTHO05D004607 2.0e-204 716.5 684 69.9
Potri.015G038100 Populus trichocarpa HOM05D003766 ORTHO05D004607 5.8e-204 714.9 684 69.9
Lj4g0008657 Lotus japonicus HOM05D003766 ORTHO05D004607 1.7e-203 713.4 672 67.1
Aqoxy3G02431 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 2.9e-203 712.6 688 66.7
Psat4g000160 Pisum sativum HOM05D003766 ORTHO05D004607 4.9e-203 711.8 690 65.2
DCAR_029422 Daucus carota HOM05D003766 ORTHO05D004607 2.4e-202 709.5 676 66.4
Rhsim08G0126600 Rhododendron simsii HOM05D003766 ORTHO05D004607 2.4e-202 709.5 749 57.9
Potri.012G046300 Populus trichocarpa HOM05D003766 ORTHO05D004607 3.2e-202 709.1 664 69.9
PGR044G0562 Punica granatum HOM05D003766 ORTHO05D004607 4.2e-202 708.8 682 71.6
AUR62042013 Chenopodium quinoa HOM05D003766 ORTHO05D004607 1.0e-200 704.1 674 69.1
Phvul.002G330600 Phaseolus vulgaris HOM05D003766 ORTHO05D004607 3.0e-200 702.6 662 69.9
Lj5C158T14 Lonicera japonica HOM05D003766 ORTHO05D004607 3.3e-199 699.1 693 64.1
Glyma.05G246700 Glycine max HOM05D003766 ORTHO05D004607 7.4e-199 698.0 676 68.9
Hund06721 Selenicereus undatus HOM05D003766 ORTHO05D004607 7.4e-199 698.0 673 69.8
PSO478G2458 Papaver somniferum HOM05D003766 ORTHO05D004607 3.7e-198 695.7 694 66.1
Gohir.A11G002900 Gossypium hirsutum HOM05D003766 ORTHO05D004607 6.2e-198 694.9 677 69.9
HanXRQChr15g0492431 Helianthus annuus HOM05D003766 ORTHO05D004607 1.1e-197 694.1 652 66.4
Gohir.D11G002500 Gossypium hirsutum HOM05D003766 ORTHO05D004607 1.4e-197 693.7 677 69.7
PSO017G5688 Papaver somniferum HOM05D003766 ORTHO05D004607 1.8e-197 693.3 693 66.5
Gorai.007G003500 Gossypium raimondii HOM05D003766 ORTHO05D004607 2.4e-197 693.0 677 69.6
THA.LOC104813927 Tarenaya hassleriana HOM05D003766 ORTHO05D004607 1.2e-196 690.6 670 64.5
CiPaw.16G093700 Carya illinoinensis HOM05D003766 ORTHO05D004607 3.4e-196 689.1 672 67.9
ECA232G0010 Erigeron canadensis HOM05D003766 ORTHO05D004607 5.8e-196 688.3 662 67.5
Migut.I00296 Erythranthe guttata HOM05D003766 ORTHO05D004607 3.8e-195 685.6 674 64.5
Ah.14g085990 Amaranthus hybridus HOM05D003766 ORTHO05D004607 6.4e-195 684.9 674 66.9
Sabra15G0036800 Salix brachista HOM05D003766 ORTHO05D004607 7.1e-194 681.4 685 67.9
Aqoxy3G00054 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 1.2e-193 680.6 687 61.1
SalBow7G0490 Salvia bowleyana HOM05D003766 ORTHO05D004607 2.1e-193 679.9 681 64.2
Lj9A419T35 Lonicera japonica HOM05D003766 ORTHO05D004607 2.7e-193 679.5 677 67.1
MD06G1227600 Malus domestica HOM05D003766 ORTHO05D004607 3.5e-193 679.1 526 78.5
TAR622G0358 Trochodendron aralioides HOM05D003766 ORTHO05D004607 2.5e-191 672.9 665 60.0
Sed0009438 Sechium edule HOM05D003766 ORTHO05D004607 4.3e-191 672.2 678 63.9
C05p16530 Brassica napus HOM05D003766 ORTHO05D004607 7.4e-191 671.4 669 64.4
BcaC05g25719 Brassica carinata HOM05D003766 ORTHO05D004607 9.6e-191 671.0 669 64.3
BolC5t30350H Brassica oleracea HOM05D003766 ORTHO05D004607 9.6e-191 671.0 669 64.3
Sp1g16220 Schrenkiella parvula HOM05D003766 ORTHO05D004607 9.6e-191 671.0 669 64.3
Aa31LG4G3770 Aethionema arabicum HOM05D003766 ORTHO05D004607 1.3e-190 670.6 671 63.9
AL1G30630 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 1.6e-190 670.2 664 64.3
A06p14270 Brassica napus HOM05D003766 ORTHO05D004607 2.1e-190 669.8 669 64.1
BraA06t24556Z Brassica rapa HOM05D003766 ORTHO05D004607 2.1e-190 669.8 669 64.1
SGA_v2.0_scaffold102G29891 Striga asiatica HOM05D003766 ORTHO05D004607 2.1e-190 669.8 689 62.1
BcaB07g31816 Brassica carinata HOM05D003766 ORTHO05D004607 2.8e-190 669.5 669 64.0
Thhalv10006987m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 4.8e-190 668.7 669 63.4
Sabra12G0032400 Salix brachista HOM05D003766 ORTHO05D004607 1.1e-189 667.5 700 65.3
Sopen03g037630 Solanum pennellii HOM05D003766 ORTHO05D004607 1.4e-189 667.2 679 66.3
CAN.G843.53 Capsicum annuum HOM05D003766 ORTHO05D004607 3.1e-189 666.0 681 63.7
AT1G18260 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 5.3e-189 665.2 664 64.0
CARHR018810 Cardamine hirsuta HOM05D003766 ORTHO05D004607 5.3e-189 665.2 675 63.1
Carub.0001s1787 Capsella rubella HOM05D003766 ORTHO05D004607 3.4e-188 662.5 669 63.2
Solyc03g118670.3 Solanum lycopersicum HOM05D003766 ORTHO05D004607 5.8e-188 661.8 679 66.0
Aa31LG7G2830 Aethionema arabicum HOM05D003766 ORTHO05D004607 1.0e-187 661.0 668 63.5
ClCG04G010600 Citrullus lanatus HOM05D003766 ORTHO05D004607 6.5e-187 658.3 684 62.7
Lsat_1_v5_gn_0_34021 Lactuca sativa HOM05D003766 ORTHO05D004607 1.1e-186 657.5 655 66.3
unitig_750.g28512 Utricularia gibba HOM05D003766 ORTHO05D004607 3.2e-186 656.0 673 60.8
MSTRG.11305 Avicennia marina HOM05D003766 ORTHO05D004607 4.2e-186 655.6 678 62.2
Oeu015089.1 Olea europaea HOM05D003766 ORTHO05D004607 2.1e-185 653.3 686 66.2
Atru.chr9.1724 Acer truncatum HOM05D003766 ORTHO05D004607 2.7e-185 652.9 611 71.5
CsaV3_1G007190 Cucumis sativus L. HOM05D003766 ORTHO05D004607 2.7e-185 652.9 679 63.0
Cc04_g06210 Coffea canephora HOM05D003766 ORTHO05D004607 3.5e-185 652.5 570 68.9
AUR62043006 Chenopodium quinoa HOM05D003766 ORTHO05D004607 1.0e-184 651.0 574 69.0
Thhalv10018231m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 1.0e-184 651.0 672 61.5
AL2G33320 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 3.0e-184 649.4 668 61.8
MELO3C002135.2 Cucumis melo HOM05D003766 ORTHO05D004607 3.9e-184 649.0 683 62.5
ATR0753G133 Amborella trichopoda HOM05D003766 ORTHO05D004607 5.1e-184 648.7 675 66.1
AT1G73570 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 5.7e-183 645.2 680 57.5
Oeu046630.1 Olea europaea HOM05D003766 ORTHO05D004607 4.8e-182 642.1 720 58.3
CARHR066590 Cardamine hirsuta HOM05D003766 ORTHO05D004607 3.1e-181 639.4 669 61.1
HanXRQChr17g0545731 Helianthus annuus HOM05D003766 ORTHO05D004607 2.2e-179 633.3 624 65.1
Peaxi162Scf00314g00235 Petunia axillaris HOM05D003766 ORTHO05D004607 1.1e-178 630.9 683 64.6
HPP92_011105 Vanilla planifolia HOM05D003766 ORTHO05D004607 4.3e-175 619.0 679 62.4
CDE05G3381 Ceratophyllum demersum HOM05D003766 ORTHO05D004607 4.1e-173 612.5 648 62.0
SEGI_38105 Sequoiadendron giganteum HOM05D003766 ORTHO05D004607 5.1e-168 595.5 681 62.0
CiPaw.15G143700 Carya illinoinensis HOM05D003766 ORTHO05D004607 6.7e-168 595.1 533 76.0
Eucgr.B00877 Eucalyptus grandis HOM05D003766 ORTHO05D004607 6.7e-168 595.1 586 66.9
Sp5g28730 Schrenkiella parvula HOM05D003766 ORTHO05D004607 6.5e-163 578.6 675 57.3
Nitab4.5_0003401g0020 Nicotiana tabacum HOM05D003766 ORTHO05D004607 1.7e-155 553.9 683 62.5
Zm00001eb011300 Zea mays HOM05D003766 ORTHO05D004607 3.8e-155 552.7 622 57.6
HanXRQChr14g0456281 Helianthus annuus HOM05D003766 ORTHO05D004607 9.4e-154 548.1 524 67.4
SMO228G0037 Selaginella moellendorffii HOM05D003766 ORTHO05D004607 1.0e-147 528.1 656 53.2
Nitab4.5_0004556g0010 Nicotiana tabacum HOM05D003766 ORTHO05D004607 2.3e-144 516.9 736 57.1
Mapoly0093s0082 Marchantia polymorpha HOM05D003766 ORTHO05D004607 3.4e-143 513.1 700 48.3
Manes.06G005600 Manihot esculenta HOM05D003766 ORTHO05D004607 1.6e-140 504.2 524 64.9
Sed0018638 Sechium edule HOM05D003766 ORTHO05D004607 2.0e-140 503.8 526 64.3
Oeu026275.1 Olea europaea HOM05D003766 ORTHO05D004607 1.4e-136 491.1 508 69.1
Pp3c19_13490 Physcomitrium patens HOM05D003766 ORTHO05D004607 3.0e-136 490.0 671 47.5
Pp3c22_10650 Physcomitrium patens HOM05D003766 ORTHO05D004607 6.0e-124 449.1 630 46.3
Carub.0002s2031 Capsella rubella HOM05D003766 ORTHO05D004607 1.2e-113 414.8 454 50.7
Pp3c19_15130 Physcomitrium patens HOM05D003766 ORTHO05D004607 3.5e-108 396.7 514 50.8
TAR629G3071 Trochodendron aralioides HOM05D003766 ORTHO05D004607 1.9e-106 391.0 265 74.0
Aqoxy3G00039 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 1.6e-105 387.9 477 60.6
TAR629G0485 Trochodendron aralioides HOM05D003766 ORTHO05D004607 1.7e-102 377.9 299 68.2
vmacro17777 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 1.3e-99 368.2 320 68.1
AagrBONN_evm.TU.Sc2ySwM_228.854 Anthoceros agrestis HOM05D003766 ORTHO05D004607 5.1e-99 366.3 476 55.7
vmacro17776 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 1.9e-98 364.4 308 65.6
COL.COLO4_04795 Corchorus olitorius HOM05D003766 ORTHO05D004607 3.5e-84 317.0 225 84.0
Zm00001eb398230 Zea mays HOM05D003766 ORTHO05D004607 1.8e-75 288.1 311 53.1
HPP92_011088 Vanilla planifolia HOM05D003766 ORTHO05D004607 2.3e-75 287.7 286 72.4
QL10p029813 Quercus lobata HOM05D003766 ORTHO05D004607 1.8e-72 278.1 345 48.7
BcaC04g22654 Brassica carinata HOM05D003766 ORTHO05D004607 3.2e-69 267.3 172 76.7
BcaC07g36877 Brassica carinata HOM05D003766 ORTHO05D004607 7.1e-69 266.2 286 55.2
BolC2t09163H Brassica oleracea HOM05D003766 ORTHO05D004607 4.6e-68 263.5 319 59.9
Psat4g000240 Pisum sativum HOM05D003766 ORTHO05D004607 3.9e-67 260.4 290 51.7
Atru.chr9.1718 Acer truncatum HOM05D003766 ORTHO05D004607 5.1e-67 260.0 215 81.9
BcaB05g24801 Brassica carinata HOM05D003766 ORTHO05D004607 1.6e-65 255.0 244 54.5
C02p31190 Brassica napus HOM05D003766 ORTHO05D004607 1.8e-56 224.9 298 45.6
BolC7t40944H Brassica oleracea HOM05D003766 ORTHO05D004607 2.2e-54 218.0 138 78.3
HPP92_011087 Vanilla planifolia HOM05D003766 ORTHO05D004607 7.9e-52 209.5 233 54.1
Actinidia35129 Actinidia chinensis HOM05D003766 ORTHO05D004607 8.2e-49 199.5 289 63.0
C09p56670 Brassica napus HOM05D003766 ORTHO05D004607 1.1e-45 189.1 111 83.8
BolC1t04841H Brassica oleracea HOM05D003766 ORTHO05D004607 2.7e-44 184.5 111 82.9
Dinv12692 Davidia involucrata HOM05D003766 ORTHO05D004607 1.5e-42 178.7 87 95.4
QL10p030223 Quercus lobata HOM05D003766 ORTHO05D004607 7.0e-40 169.9 167 56.9
CBR_g40334 Chara braunii HOM05D000019 ORTHO05D000002 1.0e-38 166.0 323 52.0
COL.COLO4_04913 Corchorus olitorius HOM05D003766 ORTHO05D004607 3.5e-31 141.0 188 50.5
C02p31200 Brassica napus HOM05D003766 ORTHO05D004607 5.2e-27 127.1 123 49.6
Hma1.2p1_2524F.1_g323905 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 7.5e-26 123.2 96 66.7
Hma1.2p1_0759F.1_g213970 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.7e-25 122.1 93 66.7
Hma1.2p1_0502F.1_g167690 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.1e-24 119.4 105 61.0
Hma1.2p1_0127F.1_g059480 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.4e-24 119.0 96 66.7
Cre03.g197400 Chlamydomonas reinhardtii HOM05D003766 ORTHO05D004607 1.2e-23 115.9 415 27.5
MCO08G236 Micromonas commoda HOM05D003766 ORTHO05D004607 4.9e-17 94.0 486 35.4
Cfa023117 Carpinus fangiana HOM05D016742 ORTHO05D028589 6.3e-17 93.6 569 28.6
C08p01510 Brassica napus HOM05D003766 ORTHO05D004607 7.0e-16 90.1 69 62.3
BraA05t20732Z Brassica rapa HOM05D003766 ORTHO05D004607 3.5e-15 87.8 68 58.8
A05p35970 Brassica napus HOM05D003766 ORTHO05D004607 3.3e-13 81.3 63 58.7
PRCOL_00002904 Prasinoderma coloniale HOM05D003766 ORTHO05D004607 3.3e-13 81.3 201 27.9
Sp5g28740 Schrenkiella parvula HOM05D000408 ORTHO05D004607 4.3e-13 80.9 150 35.3
BolC9t56024H Brassica oleracea HOM05D021712 ORTHO05D021656 9.5e-13 79.7 69 53.6
Hma1.2p1_0478F.1_g161250 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.0e-11 76.3 66 60.6
C09p31690 Brassica napus HOM05D021712 ORTHO05D021656 3.4e-10 71.2 58 55.2
Oeu002213.1 Olea europaea HOM05D003766 ORTHO05D004607 4.4e-10 70.9 169 37.3
CBR_g40333 Chara braunii HOM05D003766 ORTHO05D004607 1.7e-09 68.9 118 38.1
A05p18420 Brassica napus HOM05D017138 ORTHO05D016749 1.6e-07 62.4 59 49.2
Glyma.15G140700 Glycine max HOM05D003766 ORTHO05D004607 1.6e-07 62.4 73 46.6
EL10Ac8g19330 Beta vulgaris HOM05D003766 ORTHO05D004607 2.0e-07 62.0 68 54.4
BraA05t22403Z Brassica rapa HOM05D003766 ORTHO05D004607 2.0e-07 62.0 44 61.4
C07p05430 Brassica napus HOM05D003766 ORTHO05D016749 4.6e-07 60.8 49 55.1
Hma1.2p1_0632F.1_g192420 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 4.6e-07 60.8 52 57.7
A02p21490 Brassica napus HOM05D021712 ORTHO05D021656 1.7e-06 58.9 54 50.0


User provided reference genes

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