Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G1512 Fragaria x ananassa HOM05D004692 ORTHO05D006291 2.6e-241 838.2 394 100.0
FAN13G2141 Fragaria x ananassa HOM05D004692 ORTHO05D006291 1.2e-206 723.0 341 97.9
FvH4_5g13050 Fragaria vesca HOM05D004692 ORTHO05D006291 2.7e-206 721.8 341 97.9
FAN18G3467 Fragaria x ananassa HOM05D004692 ORTHO05D006291 6.1e-206 720.7 341 97.7
RcHm_v2.0_Chr7g0184081 Rosa chinensis HOM05D004692 ORTHO05D006291 6.3e-195 684.1 346 92.2
MD14G1218000 Malus domestica HOM05D004692 ORTHO05D006291 9.2e-186 653.7 349 87.1
Prupe.5G211900 Prunus persica HOM05D004692 ORTHO05D006291 2.5e-183 645.6 349 86.0
MD06G1207500 Malus domestica HOM05D004692 ORTHO05D006291 1.2e-182 643.3 349 86.0
Ciclev10020592m.g Citrus clementina HOM05D004692 ORTHO05D006291 1.2e-174 616.7 349 80.5
TWI81G0688 Tripterygium wilfordii HOM05D004692 ORTHO05D006291 2.1e-174 615.9 348 79.3
Lj5A139T82 Lonicera japonica HOM05D004692 ORTHO05D006291 1.1e-173 613.6 348 80.5
Dinv36841 Davidia involucrata HOM05D004692 ORTHO05D006291 2.3e-173 612.5 349 79.7
Rhsim08G0150000 Rhododendron simsii HOM05D004692 ORTHO05D006291 6.8e-173 610.9 348 79.9
Cc04_g07930 Coffea canephora HOM05D004692 ORTHO05D006291 1.2e-172 610.1 347 80.4
vmacro17655 Vaccinium macrocarpon HOM05D004692 ORTHO05D006291 1.2e-172 610.1 348 80.2
Hma1.2p1_0744F.1_g211680 Hydrangea macrophylla HOM05D004692 ORTHO05D006291 4.4e-172 608.2 348 78.7
GSVIVG01008185001 Vitis vinifera HOM05D004692 ORTHO05D006291 9.8e-172 607.1 349 79.1
EL10Ac5g11213 Beta vulgaris HOM05D004692 ORTHO05D006291 3.7e-171 605.1 349 79.4
QL10p021731 Quercus lobata HOM05D004692 ORTHO05D006291 3.7e-171 605.1 348 79.9
Nitab4.5_0007617g0010 Nicotiana tabacum HOM05D004692 ORTHO05D006291 6.4e-171 604.4 357 78.7
AUR62036914 Chenopodium quinoa HOM05D004692 ORTHO05D006291 1.1e-170 603.6 344 79.7
Phvul.003G180900 Phaseolus vulgaris HOM05D004692 ORTHO05D006291 1.9e-170 602.8 350 76.9
DCAR_015116 Daucus carota HOM05D004692 ORTHO05D006291 7.1e-170 600.9 348 78.7
arahy.Tifrunner.gnm1.ann1.51KNRK Arachis hypogaea HOM05D004692 ORTHO05D006291 9.2e-170 600.5 345 78.8
QL10p021836 Quercus lobata HOM05D004692 ORTHO05D006291 9.2e-170 600.5 348 79.3
CANSAT80G0730 Cannabis sativa HOM05D004692 ORTHO05D006291 1.2e-169 600.1 348 76.4
TPR.G2028 Trifolium pratense HOM05D004692 ORTHO05D006291 1.6e-169 599.7 349 78.2
CAN.G471.4 Capsicum annuum HOM05D004692 ORTHO05D006291 2.1e-169 599.4 349 78.8
SGA_v2.0_scaffold56G20037 Striga asiatica HOM05D004692 ORTHO05D006291 3.5e-169 598.6 373 75.3
Glyma.17G083400 Glycine max HOM05D004692 ORTHO05D006291 4.6e-169 598.2 350 77.1
Actinidia01418 Actinidia chinensis HOM05D004692 ORTHO05D006291 1.7e-168 596.3 359 76.6
CSS0001909 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 3.9e-168 595.1 348 77.3
CiPaw.15G118000 Carya illinoinensis HOM05D004692 ORTHO05D006291 3.9e-168 595.1 348 77.6
Atru.chr9.678 Acer truncatum HOM05D004692 ORTHO05D006291 5.1e-168 594.7 348 78.7
Ah.11g047310 Amaranthus hybridus HOM05D004692 ORTHO05D006291 5.1e-168 594.7 344 78.8
arahy.Tifrunner.gnm1.ann1.F96WR3 Arachis hypogaea HOM05D004692 ORTHO05D006291 5.1e-168 594.7 347 77.5
Manes.01G023900 Manihot esculenta HOM05D004692 ORTHO05D006291 5.1e-168 594.7 346 79.8
Medtr4g112810 Medicago truncatula HOM05D004692 ORTHO05D006291 6.6e-168 594.3 349 76.5
PGSC0003DMG400000653 Solanum tuberosum HOM05D004692 ORTHO05D006291 6.6e-168 594.3 349 78.2
Peaxi162Scf00119g00017 Petunia axillaris HOM05D004692 ORTHO05D006291 1.1e-167 593.6 349 78.2
Sopen12g019180 Solanum pennellii HOM05D004692 ORTHO05D006291 1.1e-167 593.6 349 77.7
DCAR_015115 Daucus carota HOM05D004692 ORTHO05D006291 1.9e-167 592.8 348 77.3
CSS0041638 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 2.5e-167 592.4 348 77.0
Solyc12g038970.3 Solanum lycopersicum HOM05D004692 ORTHO05D006291 2.5e-167 592.4 349 77.4
Potri.015G055300 Populus trichocarpa HOM05D004692 ORTHO05D006291 3.3e-167 592.0 342 78.9
arahy.Tifrunner.gnm1.ann1.6286TX Arachis hypogaea HOM05D004692 ORTHO05D006291 7.3e-167 590.9 356 76.1
AUR62032158 Chenopodium quinoa HOM05D004692 ORTHO05D006291 7.3e-167 590.9 344 78.5
Lsat_1_v5_gn_4_112840 Lactuca sativa HOM05D004692 ORTHO05D006291 9.5e-167 590.5 342 78.9
MELO3C017264.2 Cucumis melo HOM05D004692 ORTHO05D006291 1.6e-166 589.7 349 77.1
Migut.J01255 Erythranthe guttata HOM05D004692 ORTHO05D006291 2.1e-166 589.3 349 77.7
Ah.02g120970 Amaranthus hybridus HOM05D004692 ORTHO05D006291 2.8e-166 589.0 344 78.2
CsaV3_1G003170 Cucumis sativus L. HOM05D004692 ORTHO05D006291 2.8e-166 589.0 349 76.5
HanXRQChr16g0501991 Helianthus annuus HOM05D004692 ORTHO05D006291 1.8e-165 586.3 345 78.3
PSO017G3616 Papaver somniferum HOM05D004692 ORTHO05D006291 3.1e-165 585.5 348 76.7
Aqoxy3G00609 Aquilegia oxysepala HOM05D004692 ORTHO05D006291 2.0e-164 582.8 348 76.1
Ca_21742_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 2.0e-164 582.8 348 76.7
Oeu058039.1 Olea europaea HOM05D004692 ORTHO05D006291 2.0e-164 582.8 348 76.1
THA.LOC104819389 Tarenaya hassleriana HOM05D004692 ORTHO05D006291 2.6e-164 582.4 349 74.8
ClCG06G015290 Citrullus lanatus HOM05D004692 ORTHO05D006291 3.4e-164 582.0 348 76.4
Hund09975 Selenicereus undatus HOM05D004692 ORTHO05D006291 4.4e-164 581.6 348 77.0
Gohir.D07G062400 Gossypium hirsutum HOM05D004692 ORTHO05D006291 5.8e-164 581.3 349 76.5
Lalb_Chr13g0302611 Lupinus albus HOM05D004692 ORTHO05D006291 5.8e-164 581.3 346 76.0
Nn4g23609 Nelumbo nucifera HOM05D004692 ORTHO05D006291 7.6e-164 580.9 347 76.7
Gohir.A07G057600 Gossypium hirsutum HOM05D004692 ORTHO05D006291 1.7e-163 579.7 349 76.2
Lj4g0008523 Lotus japonicus HOM05D004692 ORTHO05D006291 3.8e-163 578.6 348 75.3
Sed0023319 Sechium edule HOM05D004692 ORTHO05D006291 3.8e-163 578.6 349 75.9
PSO478G1466 Papaver somniferum HOM05D004692 ORTHO05D006291 1.1e-162 577.0 348 75.3
A10p28500 Brassica napus HOM05D004692 ORTHO05D006291 1.9e-162 576.2 344 73.8
Thhalv10013807m.g Eutrema salsugineum HOM05D004692 ORTHO05D006291 1.9e-162 576.2 344 74.7
Psat4g044040 Pisum sativum HOM05D004692 ORTHO05D006291 1.9e-162 576.2 349 75.1
Hund09942 Selenicereus undatus HOM05D004692 ORTHO05D006291 1.9e-162 576.2 366 74.3
Gorai.001G065900 Gossypium raimondii HOM05D004692 ORTHO05D006291 3.2e-162 575.5 350 76.0
ECA232G0381 Erigeron canadensis HOM05D004692 ORTHO05D006291 4.1e-162 575.1 345 76.8
arahy.Tifrunner.gnm1.ann1.RJWR3V Arachis hypogaea HOM05D004692 ORTHO05D006291 1.2e-161 573.5 347 76.1
C09p68780 Brassica napus HOM05D004692 ORTHO05D006291 1.2e-161 573.5 343 74.6
VMungo1215G1525 Vigna mungo HOM05D004692 ORTHO05D006291 2.1e-161 572.8 350 74.0
C03p04140 Brassica napus HOM05D004692 ORTHO05D006291 3.5e-161 572.0 346 73.1
AT5G08170 Arabidopsis thaliana HOM05D004692 ORTHO05D006291 4.6e-161 571.6 344 74.7
BcaB08g37277 Brassica carinata HOM05D004692 ORTHO05D006291 6.0e-161 571.2 345 74.2
BolC3t12946H Brassica oleracea HOM05D004692 ORTHO05D006291 1.0e-160 570.5 345 73.0
Eucgr.B00659 Eucalyptus grandis HOM05D004692 ORTHO05D006291 1.0e-160 570.5 343 76.4
A03p03660 Brassica napus HOM05D004692 ORTHO05D006291 1.7e-160 569.7 347 72.6
BraA03t09714Z Brassica rapa HOM05D004692 ORTHO05D006291 1.7e-160 569.7 347 72.6
PGR083G2684 Punica granatum HOM05D004692 ORTHO05D006291 1.7e-160 569.7 341 74.8
BcaNung05091 Brassica carinata HOM05D004692 ORTHO05D006291 2.3e-160 569.3 348 73.0
Sp6g34780 Schrenkiella parvula HOM05D004692 ORTHO05D006291 3.9e-160 568.5 344 73.3
AL6G18560 Arabidopsis lyrata HOM05D004692 ORTHO05D006291 6.6e-160 567.8 344 74.4
Carub.0006s0707 Capsella rubella HOM05D004692 ORTHO05D006291 6.6e-160 567.8 347 72.9
MBI14_g16236_MAGBIO Magnolia biondii HOM05D004692 ORTHO05D006291 1.9e-159 566.2 348 74.1
MSTRG.22946 Avicennia marina HOM05D004692 ORTHO05D006291 2.5e-159 565.8 348 73.0
Sc12g0006990 Simmondsia chinensis HOM05D004692 ORTHO05D006291 3.6e-158 562.0 348 72.1
ATR0691G179 Amborella trichopoda HOM05D004692 ORTHO05D006291 1.2e-156 557.0 347 72.0
Aa31LG3G18370 Aethionema arabicum HOM05D004692 ORTHO05D006291 1.5e-156 556.6 376 67.6
CDE06G1750 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 1.5e-156 556.6 345 74.8
SalBow5G2075 Salvia bowleyana HOM05D004692 ORTHO05D006291 9.9e-156 553.9 358 71.5
TAR374G0590 Trochodendron aralioides HOM05D004692 ORTHO05D006291 3.8e-155 552.0 346 72.5
HanXRQChr16g0501981 Helianthus annuus HOM05D004692 ORTHO05D006291 4.6e-153 545.0 396 67.4
CDE07G1308 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 1.0e-152 543.9 348 72.4
Nitab4.5_0000208g0050 Nicotiana tabacum HOM05D004692 ORTHO05D006291 2.3e-152 542.7 369 69.9
Actinidia10430 Actinidia chinensis HOM05D004692 ORTHO05D006291 1.1e-151 540.4 356 71.9
BolC9t59625H Brassica oleracea HOM05D004692 ORTHO05D006291 2.5e-151 539.3 342 71.1
BraA10t44898Z Brassica rapa HOM05D004692 ORTHO05D006291 2.5e-151 539.3 343 70.0
Sabra15G0080100 Salix brachista HOM05D004692 ORTHO05D006291 3.3e-151 538.9 430 62.3
Thecc.03G112800 Theobroma cacao HOM05D004692 ORTHO05D006291 5.6e-151 538.1 342 73.4
Haze_18550 Corylus avellana HOM05D004692 ORTHO05D006291 6.2e-150 534.6 303 81.2
Duzib205G0043 Durio zibethinus HOM05D004692 ORTHO05D006291 1.1e-149 533.9 347 72.9
HPP92_019140 Vanilla planifolia HOM05D004692 ORTHO05D006291 9.9e-148 527.3 371 66.0
SHI18993 Sapria himalayana HOM05D004692 ORTHO05D006291 1.9e-146 523.1 379 65.7
HPP92_019130 Vanilla planifolia HOM05D004692 ORTHO05D006291 4.2e-146 521.9 349 68.2
SMO115G0272 Selaginella moellendorffii HOM05D004692 ORTHO05D006291 1.0e-144 517.3 340 68.8
Mapoly0016s0188 Marchantia polymorpha HOM05D004692 ORTHO05D006291 2.5e-143 512.7 349 65.9
unitig_26.g9673 Utricularia gibba HOM05D004692 ORTHO05D006291 4.3e-143 511.9 349 67.9
BcaB01g05624 Brassica carinata HOM05D004692 ORTHO05D006291 2.1e-142 509.6 345 67.8
Os04g0466600 Oryza sativa ssp. japonica HOM05D004692 ORTHO05D006291 3.7e-142 508.8 348 65.5
Pp3c14_21790 Physcomitrium patens HOM05D004692 ORTHO05D006291 1.3e-139 500.4 345 65.5
Ca_25716_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 1.1e-138 497.3 293 76.1
AagrBONN_evm.TU.Sc2ySwM_117.2364 Anthoceros agrestis HOM05D004692 ORTHO05D006291 1.4e-138 496.9 349 65.3
Zm00001eb424480 Zea mays HOM05D004692 ORTHO05D006291 3.7e-134 482.3 346 65.3
CBR_g22406 Chara braunii HOM05D004692 ORTHO05D006291 1.2e-124 450.7 361 60.4
arahy.Tifrunner.gnm1.ann1.U185V9 Arachis hypogaea HOM05D004692 ORTHO05D006291 1.0e-123 447.6 348 63.2
Medtr4g110140 Medicago truncatula HOM05D004692 ORTHO05D006291 4.8e-118 428.7 407 54.5
CARHR205010 Cardamine hirsuta HOM05D004692 ORTHO05D006291 9.4e-114 414.5 236 79.7
CSS0041488 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.4e-96 357.5 256 65.6
Cfa019856 Carpinus fangiana HOM05D004692 ORTHO05D006291 1.3e-94 350.9 318 56.3
CSS0026593 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.7e-94 350.5 255 65.1
CSS0018290 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 6.3e-94 348.6 210 74.8
Pp3c13_22750 Physcomitrium patens HOM05D004692 ORTHO05D006291 2.3e-88 330.1 357 47.3
Cre01.g009350 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 1.2e-87 327.8 386 44.8
Sc12g0006960 Simmondsia chinensis HOM05D004692 ORTHO05D006291 3.4e-87 326.2 192 77.6
CSS0048768 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 3.6e-81 306.2 165 80.0
CSS0021853 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 4.0e-80 302.8 183 73.8
PRCOL_00005028 Prasinoderma coloniale HOM05D004692 ORTHO05D006291 2.3e-75 287.0 379 43.0
Cpa.g.c37454 Carica papaya HOM05D004692 ORTHO05D006291 1.6e-73 280.8 170 74.7
Hund10163 Selenicereus undatus HOM05D004692 ORTHO05D006291 1.0e-72 278.1 348 44.5
Lsat_1_v5_gn_5_119361 Lactuca sativa HOM05D004692 ORTHO05D006291 2.6e-63 246.9 171 70.2
Cpa.g.c37318 Carica papaya HOM05D004692 ORTHO05D006291 2.4e-45 187.2 94 87.2
Cre01.g053300 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 9.2e-45 185.3 404 30.9
FAN04G1239 Fragaria x ananassa HOM05D004692 ORTHO05D006291 6.2e-41 172.6 114 79.8
C05p13090 Brassica napus HOM05D004692 ORTHO05D006291 1.0e-35 155.2 104 67.3
BcaC05g25434 Brassica carinata HOM05D004692 ORTHO05D006291 3.9e-35 153.3 98 70.4
Ca_29974_v3 Cicer arietinum L. HOM05D000837 ORTHO05D008386 3.3e-26 123.6 67 85.1
Lsat_1_v5_gn_3_89601 Lactuca sativa HOM05D004692 ORTHO05D006291 2.8e-25 120.6 93 64.5
RcHm_v2.0_Chr2g0128461 Rosa chinensis HOM05D004692 ORTHO05D019764 5.8e-23 112.8 162 41.4
RcHm_v2.0_Chr4g0407261 Rosa chinensis HOM05D004692 ORTHO05D019764 2.1e-20 104.4 156 41.7
CDE06G1955 Ceratophyllum demersum HOM05D004692 ORTHO05D019764 1.6e-17 94.7 63 68.3
SGA_v2.0_scaffold26G11385 Striga asiatica HOM05D004692 ORTHO05D019764 3.7e-17 93.6 91 49.5
RcHm_v2.0_Chr2g0129061 Rosa chinensis HOM05D004692 ORTHO05D006291 3.1e-16 90.5 43 93.0
RcHm_v2.0_Chr2g0164691 Rosa chinensis HOM05D004692 ORTHO05D019764 1.5e-15 88.2 41 97.6
arahy.Tifrunner.gnm1.ann1.5N8491 Arachis hypogaea HOM05D004692 ORTHO05D019764 2.0e-15 87.8 46 84.8
RcHm_v2.0_Chr4g0407271 Rosa chinensis HOM05D004692 ORTHO05D342244 7.7e-07 59.3 65 46.2
Haze_18551 Corylus avellana HOM05D016865 ORTHO05D022463 1.7e-06 58.2 30 66.7
Cpa.g.c45305 Carica papaya HOM05D004692 ORTHO05D006291 2.9e-06 57.4 29 69.0
BraA01t02993Z Brassica rapa HOM05D004692 ORTHO05D006291 5.0e-06 56.6 36 63.9
BraA09t36800Z Brassica rapa HOM05D004692 ORTHO05D006291 5.0e-06 56.6 36 63.9


User provided reference genes

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