Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G0926 Fragaria x ananassa HOM05D005717 ORTHO05D007221 0.0e+00 1716.8 958 100.0
FvH4_5g13280 Fragaria vesca HOM05D005717 ORTHO05D007221 0.0e+00 1676.0 958 97.9
FAN18G3426 Fragaria x ananassa HOM05D005717 ORTHO05D007221 0.0e+00 1673.7 958 97.6
FAN13G2659 Fragaria x ananassa HOM05D005717 ORTHO05D007221 0.0e+00 1625.1 929 97.7
RcHm_v2.0_Chr7g0183891 Rosa chinensis HOM05D005717 ORTHO05D007221 0.0e+00 1543.5 969 90.3
MD06G1206600 Malus domestica HOM05D005717 ORTHO05D007221 0.0e+00 1213.7 977 73.6
MD14G1217300 Malus domestica HOM05D005717 ORTHO05D007221 0.0e+00 1212.2 976 70.9
Prupe.5G211000 Prunus persica HOM05D005717 ORTHO05D007221 0.0e+00 1173.3 974 70.4
Cfa019855 Carpinus fangiana HOM05D005717 ORTHO05D007221 0.0e+00 1160.6 971 65.6
QL10p021360 Quercus lobata HOM05D005717 ORTHO05D007221 0.0e+00 1149.8 960 65.5
CiPaw.16G080600 Carya illinoinensis HOM05D005717 ORTHO05D007221 0.0e+00 1143.6 907 72.5
Haze_18548 Corylus avellana HOM05D005717 ORTHO05D007221 0.0e+00 1133.2 1049 60.6
CANSAT80G2305 Cannabis sativa HOM05D005717 ORTHO05D007221 0.0e+00 1126.7 958 68.8
Atru.chr9.636 Acer truncatum HOM05D005717 ORTHO05D007221 0.0e+00 1122.8 965 64.0
Potri.012G065200 Populus trichocarpa HOM05D005717 ORTHO05D007221 0.0e+00 1121.7 976 67.3
MELO3C017258.2 Cucumis melo HOM05D005717 ORTHO05D007221 0.0e+00 1112.8 969 62.3
Ciclev10018495m.g Citrus clementina HOM05D005717 ORTHO05D007221 0.0e+00 1109.7 972 63.5
CsaV3_1G003250 Cucumis sativus L. HOM05D005717 ORTHO05D007221 0.0e+00 1104.4 970 62.2
ClCG06G015370 Citrullus lanatus HOM05D005717 ORTHO05D007221 0.0e+00 1099.3 975 61.9
arahy.Tifrunner.gnm1.ann1.V6HMAT Arachis hypogaea HOM05D005717 ORTHO05D007221 0.0e+00 1099.0 973 62.4
Sabra12G0046300 Salix brachista HOM05D005717 ORTHO05D007221 0.0e+00 1095.5 974 61.8
Manes.06G080000 Manihot esculenta HOM05D005717 ORTHO05D007221 0.0e+00 1091.6 955 67.7
Lj1g0015597 Lotus japonicus HOM05D005717 ORTHO05D007221 0.0e+00 1091.3 970 60.4
arahy.Tifrunner.gnm1.ann1.06HQ5Q Arachis hypogaea HOM05D005717 ORTHO05D007221 0.0e+00 1089.7 973 62.2
Thecc.03G110500 Theobroma cacao HOM05D005717 ORTHO05D007221 0.0e+00 1089.7 954 66.9
Ca_26377_v3 Cicer arietinum L. HOM05D005717 ORTHO05D007221 0.0e+00 1089.3 967 66.6
Lj5A138T57 Lonicera japonica HOM05D005717 ORTHO05D007221 0.0e+00 1087.0 965 64.0
GSVIVG01008170001 Vitis vinifera HOM05D005717 ORTHO05D007221 0.0e+00 1085.1 971 60.4
Medtr2g059200 Medicago truncatula HOM05D005717 ORTHO05D007221 0.0e+00 1076.2 974 66.0
Duzib205G0984 Durio zibethinus HOM05D005717 ORTHO05D007221 6.6e-312 1073.5 953 66.0
PGR044G0409 Punica granatum HOM05D005717 ORTHO05D007221 2.6e-311 1072.0 973 66.1
TPR.G15323 Trifolium pratense HOM05D005717 ORTHO05D007221 1.3e-310 1069.7 971 65.2
Duzib068G1379 Durio zibethinus HOM05D005717 ORTHO05D007221 1.1e-309 1066.6 938 67.8
TAR629G3288 Trochodendron aralioides HOM05D005717 ORTHO05D007221 1.6e-308 1062.8 958 66.5
Psat1g029000 Pisum sativum HOM05D005717 ORTHO05D007221 1.8e-307 1059.3 969 65.8
Sc04g0003990 Simmondsia chinensis HOM05D005717 ORTHO05D007221 3.9e-307 1058.1 979 60.0
Sed0011544 Sechium edule HOM05D005717 ORTHO05D007221 4.3e-306 1054.7 978 57.3
Eucgr.K02631 Eucalyptus grandis HOM05D005717 ORTHO05D007221 2.8e-305 1052.0 976 64.2
TWI81G0191 Tripterygium wilfordii HOM05D005717 ORTHO05D007221 2.0e-303 1045.8 977 60.4
Dinv36820 Davidia involucrata HOM05D005717 ORTHO05D007221 3.4e-303 1045.0 972 61.6
Nitab4.5_0002805g0040 Nicotiana tabacum HOM05D005717 ORTHO05D007221 1.0e-302 1043.5 973 59.5
Gorai.003G103900 Gossypium raimondii HOM05D005717 ORTHO05D007221 1.7e-302 1042.7 963 64.4
Gohir.A03G072200 Gossypium hirsutum HOM05D005717 ORTHO05D007221 3.8e-302 1041.6 955 64.1
Migut.D01493 Erythranthe guttata HOM05D005717 ORTHO05D007221 6.5e-302 1040.8 901 62.2
Gohir.D03G099000 Gossypium hirsutum HOM05D005717 ORTHO05D007221 7.2e-301 1037.3 953 64.8
MSTRG.9576 Avicennia marina HOM05D005717 ORTHO05D007221 1.6e-300 1036.2 968 60.1
Sopen03g033760 Solanum pennellii HOM05D005717 ORTHO05D007221 1.6e-300 1036.2 974 61.4
Cc04_g08130 Coffea canephora HOM05D005717 ORTHO05D007221 2.1e-300 1035.8 961 59.9
VMungo1309G2787 Vigna mungo HOM05D005717 ORTHO05D007221 2.1e-300 1035.8 975 63.6
TWI60G0681 Tripterygium wilfordii HOM05D005717 ORTHO05D007221 1.8e-299 1032.7 948 60.3
Nitab4.5_0000646g0340 Nicotiana tabacum HOM05D005717 ORTHO05D007221 3.9e-299 1031.6 973 59.1
Nn4g23582 Nelumbo nucifera HOM05D005717 ORTHO05D007221 1.5e-298 1029.6 966 65.5
Actinidia24269 Actinidia chinensis HOM05D005717 ORTHO05D007221 9.7e-298 1026.9 962 59.7
Lalb_Chr08g0235411 Lupinus albus HOM05D005717 ORTHO05D007221 2.2e-297 1025.8 955 60.2
Rhsim12G0147200 Rhododendron simsii HOM05D005717 ORTHO05D007221 2.4e-296 1022.3 976 58.3
PGSC0003DMG400024615 Solanum tuberosum HOM05D005717 ORTHO05D007221 1.2e-295 1020.0 971 63.9
CSS0018836 Camellia sinensis var. sinensis HOM05D005717 ORTHO05D007221 3.4e-295 1018.5 948 59.5
MBI15_g42003_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 4.5e-295 1018.1 941 64.3
Peaxi162Scf00017g03258 Petunia axillaris HOM05D005717 ORTHO05D007221 7.7e-295 1017.3 919 60.7
Oeu031929.1 Olea europaea HOM05D005717 ORTHO05D007221 2.5e-293 1012.3 957 59.2
Lsat_1_v5_gn_4_112460 Lactuca sativa HOM05D005717 ORTHO05D007221 2.7e-292 1008.8 967 57.4
vmacro16471 Vaccinium macrocarpon HOM05D005717 ORTHO05D007221 1.6e-287 993.0 983 57.2
DCAR_014013 Daucus carota HOM05D005717 ORTHO05D007221 2.6e-287 992.3 984 61.9
SalBow1G6140 Salvia bowleyana HOM05D005717 ORTHO05D007221 4.5e-287 991.5 1014 56.5
AUR62032150 Chenopodium quinoa HOM05D005717 ORTHO05D007221 1.3e-286 989.9 1003 56.2
AUR62039684 Chenopodium quinoa HOM05D005717 ORTHO05D007221 2.9e-286 988.8 1010 56.0
Aqoxy3G00578 Aquilegia oxysepala HOM05D005717 ORTHO05D004235 8.5e-286 987.3 940 58.1
EL10Ac5g11198 Beta vulgaris HOM05D005717 ORTHO05D007221 2.5e-285 985.7 1011 55.6
Phvul.009G204400 Phaseolus vulgaris HOM05D005717 ORTHO05D007221 1.6e-284 983.0 974 61.4
Glyma.04G158400 Glycine max HOM05D005717 ORTHO05D007221 2.1e-284 982.6 965 62.3
ECA232G0673 Erigeron canadensis HOM05D005717 ORTHO05D007221 1.0e-283 980.3 883 59.5
Ah.11g047340 Amaranthus hybridus HOM05D005717 ORTHO05D007221 3.0e-283 978.8 983 56.8
Hund09972 Selenicereus undatus HOM05D005717 ORTHO05D007221 4.0e-283 978.4 1003 56.2
HanXRQChr16g0501941 Helianthus annuus HOM05D005717 ORTHO05D007221 2.0e-282 976.1 981 58.3
Glyma.06G206800 Glycine max HOM05D005717 ORTHO05D007221 9.7e-282 973.8 964 62.2
SGA_v2.0_scaffold42G16051 Striga asiatica HOM05D005717 ORTHO05D007221 1.5e-274 949.9 940 57.2
CDE01G0371 Ceratophyllum demersum HOM05D005717 ORTHO05D007221 1.0e-267 927.2 969 54.6
Dinv38628 Davidia involucrata HOM05D005717 ORTHO05D007221 3.1e-264 915.6 962 56.4
Carub.0005s0880 Capsella rubella HOM05D005717 ORTHO05D007221 7.3e-261 904.4 976 53.4
AL5G20890 Arabidopsis lyrata HOM05D005717 ORTHO05D007221 1.2e-258 897.1 978 57.0
Solyc03g114690.4 Solanum lycopersicum HOM05D005717 ORTHO05D007221 1.5e-258 896.7 818 60.9
Thhalv10016196m.g Eutrema salsugineum HOM05D005717 ORTHO05D007221 9.8e-258 894.0 973 57.7
THA.LOC104804979 Tarenaya hassleriana HOM05D005717 ORTHO05D007221 1.7e-257 893.3 968 56.5
unitig_578.g15938 Utricularia gibba HOM05D005717 ORTHO05D007221 2.2e-257 892.9 960 53.8
Sp5g17930 Schrenkiella parvula HOM05D005717 ORTHO05D007221 2.4e-256 889.4 973 57.9
SpUn0079_0020 Schrenkiella parvula HOM05D005717 ORTHO05D007221 2.4e-256 889.4 973 57.9
PSO017G2079 Papaver somniferum HOM05D005717 ORTHO05D007221 3.5e-255 885.6 964 57.6
BcaB01g01238 Brassica carinata HOM05D005717 ORTHO05D007221 2.3e-254 882.9 952 58.3
PSO478G4609 Papaver somniferum HOM05D005717 ORTHO05D007221 1.9e-253 879.8 971 53.0
AT3G42660 Arabidopsis thaliana HOM05D005717 ORTHO05D007221 1.2e-252 877.1 978 56.4
CARHR153710 Cardamine hirsuta HOM05D005717 ORTHO05D007221 2.6e-250 869.4 955 57.5
BolC3t19078H Brassica oleracea HOM05D005717 ORTHO05D007221 1.9e-248 863.2 976 56.4
C03p68460 Brassica napus HOM05D005717 ORTHO05D007221 2.4e-248 862.8 954 57.0
Cpa.g.sc3.215 Carica papaya HOM05D005717 ORTHO05D007221 2.4e-248 862.8 973 50.5
A06p22690 Brassica napus HOM05D005717 ORTHO05D007221 5.4e-248 861.7 955 57.7
BcaC01g02114 Brassica carinata HOM05D005717 ORTHO05D007221 9.2e-248 860.9 976 56.2
BraA06t25353Z Brassica rapa HOM05D005717 ORTHO05D007221 1.6e-247 860.1 954 57.8
Aa31LG4G13310 Aethionema arabicum HOM05D005717 ORTHO05D007221 2.3e-243 846.3 976 54.5
Os09g0241100 Oryza sativa ssp. japonica HOM05D005717 ORTHO05D007221 2.7e-239 832.8 996 50.0
ATR0691G143 Amborella trichopoda HOM05D005717 ORTHO05D007221 1.4e-211 740.7 872 49.8
Zm00001eb308160 Zea mays HOM05D005717 ORTHO05D007221 7.1e-208 728.4 774 52.2
SEGI_19386 Sequoiadendron giganteum HOM05D005717 ORTHO05D007221 3.3e-205 719.5 959 46.7
AagrBONN_evm.TU.Sc2ySwM_344.3979 Anthoceros agrestis HOM05D005717 ORTHO05D007221 3.9e-174 616.3 840 45.2
Mapoly0112s0022 Marchantia polymorpha HOM05D005717 ORTHO05D007221 1.7e-169 600.9 971 46.9
SHI19002 Sapria himalayana HOM05D005717 ORTHO05D007221 7.0e-163 578.9 603 57.4
SMO201G0059 Selaginella moellendorffii HOM05D005717 ORTHO05D007221 1.5e-149 534.6 838 45.3
HPP92_020490 Vanilla planifolia HOM05D005717 ORTHO05D007221 1.2e-130 471.9 510 54.7
Pp3c26_14490 Physcomitrium patens HOM05D005717 ORTHO05D007221 3.9e-129 466.8 661 43.9
HPP92_020489 Vanilla planifolia HOM05D005717 ORTHO05D007221 1.9e-120 438.0 462 53.0
CBR_g19153 Chara braunii HOM05D005717 ORTHO05D007221 9.9e-117 425.6 830 35.2
PRCOL_00001230 Prasinoderma coloniale HOM05D005717 ORTHO05D007221 3.1e-86 324.3 786 31.3
MCO04G151 Micromonas commoda HOM05D005717 ORTHO05D007221 7.7e-77 293.1 968 28.3
SHI19003 Sapria himalayana HOM05D005717 ORTHO05D007221 5.0e-76 290.4 359 51.0
Peaxi162Scf00417g01311 Petunia axillaris HOM05D005717 ORTHO05D007221 5.1e-65 253.8 537 37.1
Cre16.g652950 Chlamydomonas reinhardtii HOM05D005717 ORTHO05D007221 8.2e-63 246.5 871 25.1
Peaxi162Scf00417g01333 Petunia axillaris HOM05D005717 ORTHO05D007221 1.7e-52 212.2 172 64.0
Lsat_1_v5_gn_5_133280 Lactuca sativa HOM05D005717 ORTHO05D007221 3.0e-49 201.4 230 47.8
Lsat_1_v5_gn_4_132261 Lactuca sativa HOM05D005717 ORTHO05D007221 2.2e-47 195.3 231 46.8
Medtr8g432590 Medicago truncatula HOM05D005717 ORTHO05D007221 9.8e-24 116.7 84 66.7
Actinidia04785 Actinidia chinensis HOM05D005717 ORTHO05D007221 1.1e-22 113.2 67 77.6
C03p68400 Brassica napus HOM05D005717 ORTHO05D007221 7.8e-21 107.1 90 60.0
BolC3t19074H Brassica oleracea HOM05D005717 ORTHO05D007221 1.7e-20 105.9 90 60.0
BraA06t25356Z Brassica rapa HOM05D005717 ORTHO05D007221 1.2e-16 93.2 90 56.7
A06p22750 Brassica napus HOM05D005717 ORTHO05D007221 1.5e-16 92.8 101 50.5
Medtr2g090685 Medicago truncatula HOM05D005717 ORTHO05D007221 2.6e-16 92.0 67 65.7
Lsat_1_v5_gn_4_12100 Lactuca sativa HOM05D005717 ORTHO05D007221 2.2e-15 89.0 118 46.6
MBI16_g18971_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 9.2e-14 83.6 158 35.4
Actinidia04786 Actinidia chinensis HOM05D005717 ORTHO05D007221 4.6e-13 81.3 213 31.9
AUR62037337 Chenopodium quinoa HOM05D006312 ORTHO05D007843 6.8e-09 67.4 37 81.1
Hma1.2p1_0733F.1_g210250 Hydrangea macrophylla HOM05D005717 ORTHO05D007221 4.4e-08 64.7 55 69.1


User provided reference genes

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