Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G0746 Fragaria x ananassa HOM05D000747 ORTHO05D001683 3.4e-213 745.0 444 100.0
FvH4_5g34290 Fragaria vesca HOM05D000747 ORTHO05D001683 2.8e-199 698.7 424 99.5
FAN18G0248 Fragaria x ananassa HOM05D000747 ORTHO05D001683 2.8e-199 698.7 424 99.5
FAN04G1446 Fragaria x ananassa HOM05D000747 ORTHO05D001683 1.7e-188 662.9 424 93.4
RcHm_v2.0_Chr7g0234861 Rosa chinensis HOM05D000747 ORTHO05D001683 1.1e-184 650.2 424 92.0
Prupe.1G535000 Prunus persica HOM05D000747 ORTHO05D001683 5.7e-160 568.2 425 82.8
MD08G1203000 Malus domestica HOM05D000747 ORTHO05D001683 1.4e-153 547.0 423 79.7
MD15G1388600 Malus domestica HOM05D000747 ORTHO05D001683 2.0e-149 533.1 424 80.0
Haze_22488 Corylus avellana HOM05D000747 ORTHO05D001683 1.6e-141 506.9 426 74.2
Thecc.08G073800 Theobroma cacao HOM05D000747 ORTHO05D001683 1.4e-137 493.8 425 71.1
COL.COLO4_35278 Corchorus olitorius HOM05D000747 ORTHO05D001683 3.1e-137 492.7 426 71.4
Ciclev10000001m.g Citrus clementina HOM05D000747 ORTHO05D001683 4.0e-137 492.3 427 70.5
Cfa013814 Carpinus fangiana HOM05D000747 ORTHO05D001683 9.8e-136 487.6 426 74.2
QL09p018620 Quercus lobata HOM05D000747 ORTHO05D001683 1.3e-135 487.3 426 73.5
Atru.chr13.978 Acer truncatum HOM05D000747 ORTHO05D001683 2.9e-135 486.1 425 68.2
Duzib116G0124 Durio zibethinus HOM05D000747 ORTHO05D001683 3.7e-135 485.7 426 69.0
CiPaw.08G057100 Carya illinoinensis HOM05D000747 ORTHO05D001683 1.4e-134 483.8 426 71.1
Manes.05G189200 Manihot esculenta HOM05D000747 ORTHO05D001683 1.4e-134 483.8 426 70.2
Duzib041G0164 Durio zibethinus HOM05D000747 ORTHO05D001683 3.9e-132 475.7 423 69.0
Potri.002G110500 Populus trichocarpa HOM05D000747 ORTHO05D001683 2.8e-130 469.5 425 70.4
Cpa.g.sc21.42 Carica papaya HOM05D000747 ORTHO05D001683 6.2e-130 468.4 425 68.0
Sabra02G0087000 Salix brachista HOM05D000747 ORTHO05D001683 1.4e-129 467.2 424 67.2
Gorai.009G278900 Gossypium raimondii HOM05D000747 ORTHO05D001683 1.8e-129 466.8 423 70.4
Duzib093G1788 Durio zibethinus HOM05D000747 ORTHO05D001683 3.1e-129 466.1 435 68.5
Gohir.A05G264300 Gossypium hirsutum HOM05D000747 ORTHO05D001683 4.0e-129 465.7 423 70.0
Gohir.D05G266800 Gossypium hirsutum HOM05D000747 ORTHO05D001683 4.0e-129 465.7 423 70.4
Actinidia10269 Actinidia chinensis HOM05D000747 ORTHO05D001683 5.2e-129 465.3 426 65.5
Rhsim07G0213300 Rhododendron simsii HOM05D000747 ORTHO05D001683 1.5e-128 463.8 427 67.9
Gorai.009G228200 Gossypium raimondii HOM05D000747 ORTHO05D001683 2.0e-128 463.4 424 67.0
Gohir.D05G221100 Gossypium hirsutum HOM05D000747 ORTHO05D001683 4.4e-128 462.2 424 67.9
CiPaw.07G163100 Carya illinoinensis HOM05D000747 ORTHO05D001683 7.5e-128 461.5 425 71.3
Gohir.A06G030900 Gossypium hirsutum HOM05D000747 ORTHO05D001683 9.8e-128 461.1 425 65.4
Gorai.010G033100 Gossypium raimondii HOM05D000747 ORTHO05D001683 3.7e-127 459.1 425 65.6
TAR625G1466 Trochodendron aralioides HOM05D000747 ORTHO05D001683 8.3e-127 458.0 425 65.6
Gohir.A05G218400 Gossypium hirsutum HOM05D000747 ORTHO05D001683 1.1e-126 457.6 424 70.3
CSS0007399 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D001683 1.0e-124 451.1 426 67.6
Actinidia29657 Actinidia chinensis HOM05D000747 ORTHO05D001683 1.7e-124 450.3 425 66.1
TAR256G0008 Trochodendron aralioides HOM05D000747 ORTHO05D001683 6.6e-124 448.4 427 67.9
TAR381G0008 Trochodendron aralioides HOM05D000747 ORTHO05D001683 6.6e-124 448.4 427 67.9
Manes.18G057015 Manihot esculenta HOM05D000747 ORTHO05D001683 1.1e-123 447.6 438 66.4
Psat5g049800 Pisum sativum HOM05D000747 ORTHO05D001683 4.3e-123 445.7 429 63.2
Aqoxy5G01343 Aquilegia oxysepala HOM05D000747 ORTHO05D001683 2.1e-122 443.4 431 66.4
CsaV3_2G030130 Cucumis sativus L. HOM05D000747 ORTHO05D001683 1.8e-121 440.3 426 66.9
MELO3C011072.2 Cucumis melo HOM05D000747 ORTHO05D001683 4.0e-121 439.1 425 66.8
TPR.G6372 Trifolium pratense HOM05D000747 ORTHO05D001683 5.2e-121 438.7 427 62.5
Sed0015542 Sechium edule HOM05D000747 ORTHO05D001683 6.8e-121 438.3 427 66.3
Lalb_Chr17g0344621 Lupinus albus HOM05D000747 ORTHO05D001683 2.6e-120 436.4 421 67.9
Glyma.04G096900 Glycine max HOM05D000747 ORTHO05D001683 4.4e-120 435.6 429 66.9
Gohir.D06G030100 Gossypium hirsutum HOM05D000747 ORTHO05D001683 2.9e-119 433.0 425 64.9
TWI56G1479 Tripterygium wilfordii HOM05D000747 ORTHO05D001683 7.1e-118 428.3 426 62.0
TWI12G0371 Tripterygium wilfordii HOM05D000747 ORTHO05D001683 2.1e-117 426.8 429 64.6
Hma1.2p1_0010F.1_g006490 Hydrangea macrophylla HOM05D000747 ORTHO05D001683 6.0e-117 425.2 425 67.5
GSVIVG01009206001 Vitis vinifera HOM05D000747 ORTHO05D001683 6.0e-117 425.2 432 56.5
arahy.Tifrunner.gnm1.ann1.CI62AJ Arachis hypogaea HOM05D000747 ORTHO05D001683 1.0e-116 424.5 427 66.7
Nn5g29819 Nelumbo nucifera HOM05D000747 ORTHO05D001683 5.1e-116 422.2 427 60.0
Lsat_1_v5_gn_1_2001 Lactuca sativa HOM05D000747 ORTHO05D001683 8.6e-116 421.4 427 61.4
arahy.Tifrunner.gnm1.ann1.3KGV08 Arachis hypogaea HOM05D000747 ORTHO05D001683 3.3e-115 419.5 424 66.7
Glyma.14G183000 Glycine max HOM05D000747 ORTHO05D001683 4.3e-115 419.1 426 66.2
Sc15g0003080 Simmondsia chinensis HOM05D000747 ORTHO05D001683 3.6e-114 416.0 422 65.2
LjContig00408g0027979 Lotus japonicus HOM05D000747 ORTHO05D001683 6.2e-114 415.2 427 66.3
Ca_05473_v3 Cicer arietinum L. HOM05D000747 ORTHO05D001683 2.4e-113 413.3 426 66.9
ECA247G4116 Erigeron canadensis HOM05D000747 ORTHO05D001683 3.1e-113 412.9 425 60.7
Glyma.02G216000 Glycine max HOM05D000747 ORTHO05D001683 3.1e-113 412.9 426 66.0
Medtr3g099777 Medicago truncatula HOM05D000747 ORTHO05D001683 4.0e-113 412.5 442 60.0
Lalb_Chr08g0242601 Lupinus albus HOM05D000747 ORTHO05D001683 2.0e-112 410.2 419 63.5
Lalb_Chr23g0269951 Lupinus albus HOM05D000747 ORTHO05D001683 2.6e-112 409.8 421 66.0
TPR.G30874 Trifolium pratense HOM05D000747 ORTHO05D001683 3.4e-112 409.5 423 66.4
Cc10_g08380 Coffea canephora HOM05D000747 ORTHO05D001683 4.4e-112 409.1 433 62.4
Glyma.06G098700 Glycine max HOM05D000747 ORTHO05D001683 9.9e-112 407.9 429 65.7
EL10Ac1g00487 Beta vulgaris HOM05D000747 ORTHO05D001683 1.3e-111 407.5 427 65.1
Lj1g0021401 Lotus japonicus HOM05D000747 ORTHO05D001683 4.9e-111 405.6 429 61.8
Eucgr.F02160 Eucalyptus grandis HOM05D000747 ORTHO05D001683 6.4e-111 405.2 430 64.9
Hund26826 Selenicereus undatus HOM05D000747 ORTHO05D001683 1.4e-110 404.1 403 66.3
PGR031G3206 Punica granatum HOM05D000747 ORTHO05D001683 2.4e-110 403.3 437 64.3
THA.LOC104799856 Tarenaya hassleriana HOM05D000747 ORTHO05D001683 7.1e-110 401.7 429 61.3
Phvul.008G183200 Phaseolus vulgaris HOM05D000747 ORTHO05D001683 1.6e-109 400.6 427 60.4
Peaxi162Scf01112g00136 Petunia axillaris HOM05D000747 ORTHO05D001683 3.0e-108 396.4 429 63.9
Nitab4.5_0009446g0010 Nicotiana tabacum HOM05D000747 ORTHO05D001683 1.6e-106 390.6 435 61.8
Sed0006720 Sechium edule HOM05D000747 ORTHO05D001683 3.6e-106 389.4 420 62.4
Psat2g064840 Pisum sativum HOM05D000747 ORTHO05D001683 6.2e-106 388.7 426 64.8
Ah.05g171530 Amaranthus hybridus HOM05D000747 ORTHO05D001683 8.1e-106 388.3 424 62.5
PSO170G1658 Papaver somniferum HOM05D000747 ORTHO05D001683 1.8e-105 387.1 431 63.6
Phvul.009G034900 Phaseolus vulgaris HOM05D000747 ORTHO05D001683 2.4e-105 386.7 430 61.2
Medtr5g066710 Medicago truncatula HOM05D000747 ORTHO05D001683 5.3e-105 385.6 424 63.9
arahy.Tifrunner.gnm1.ann1.I0605Y Arachis hypogaea HOM05D000747 ORTHO05D001683 5.8e-104 382.1 435 63.7
Lalb_Chr11g0064861 Lupinus albus HOM05D000747 ORTHO05D001683 7.6e-104 381.7 422 63.0
arahy.Tifrunner.gnm1.ann1.PS3G0C Arachis hypogaea HOM05D000747 ORTHO05D001683 2.2e-103 380.2 435 63.4
MSTRG.24981 Avicennia marina HOM05D000747 ORTHO05D001683 2.9e-103 379.8 423 57.7
Aa31LG4G9560 Aethionema arabicum HOM05D000747 ORTHO05D001683 4.9e-103 379.0 428 59.3
Sopen04g030340 Solanum pennellii HOM05D000747 ORTHO05D001683 4.9e-103 379.0 428 60.5
Nn1g05645 Nelumbo nucifera HOM05D000747 ORTHO05D001683 5.4e-102 375.6 432 55.6
HanXRQChr02g0045911 Helianthus annuus HOM05D000747 ORTHO05D001683 4.6e-101 372.5 428 63.8
CARHR259180 Cardamine hirsuta HOM05D000747 ORTHO05D001683 1.3e-100 370.9 426 61.0
Oeu038170.1 Olea europaea HOM05D000747 ORTHO05D001683 1.3e-100 370.9 419 60.9
Oeu040883.2 Olea europaea HOM05D000747 ORTHO05D001683 2.3e-100 370.2 424 59.7
CAN.G193.8 Capsicum annuum HOM05D000747 ORTHO05D001683 6.6e-100 368.6 430 63.3
AL8G23550 Arabidopsis lyrata HOM05D000747 ORTHO05D001683 1.1e-99 367.9 429 61.8
PSO210G0754 Papaver somniferum HOM05D000747 ORTHO05D001683 1.5e-99 367.5 427 62.3
MBI16_g27902_MAGBIO Magnolia biondii HOM05D000747 ORTHO05D001683 3.6e-98 362.8 427 62.1
BcaC04g22167 Brassica carinata HOM05D000747 ORTHO05D001683 1.8e-97 360.5 430 60.2
Carub.0008s0954 Capsella rubella HOM05D000747 ORTHO05D001683 3.1e-97 359.8 426 61.3
BcaB07g31166 Brassica carinata HOM05D000747 ORTHO05D001683 2.0e-96 357.1 430 60.0
BolC9t55177H Brassica oleracea HOM05D000747 ORTHO05D001683 1.3e-95 354.4 456 57.2
Dinv44878 Davidia involucrata HOM05D000747 ORTHO05D001683 2.2e-95 353.6 424 50.2
Sp6g10940 Schrenkiella parvula HOM05D000747 ORTHO05D001683 2.2e-95 353.6 425 59.5
CDE04G1670 Ceratophyllum demersum HOM05D000747 ORTHO05D001683 1.4e-94 350.9 427 58.8
Hma1.2p1_0125F.1_g058695 Hydrangea macrophylla HOM05D000747 ORTHO05D001683 6.7e-92 342.0 333 68.2
BolC9t55174H Brassica oleracea HOM05D000747 ORTHO05D001683 1.3e-90 337.8 442 56.8
ATR0767G187 Amborella trichopoda HOM05D000747 ORTHO05D001683 8.1e-90 335.1 431 52.7
BcaC04g22166 Brassica carinata HOM05D000747 ORTHO05D001683 1.8e-89 334.0 427 58.3
C09p22520 Brassica napus HOM05D000747 ORTHO05D001683 1.2e-88 331.3 425 50.4
A09p18120 Brassica napus HOM05D000747 ORTHO05D001683 2.0e-88 330.5 462 54.8
Nitab4.5_0000131g0010 Nicotiana tabacum HOM05D000747 ORTHO05D001683 3.4e-88 329.7 433 59.1
CDE07G1476 Ceratophyllum demersum HOM05D000747 ORTHO05D001683 1.1e-86 324.7 427 55.7
BcaC04g22169 Brassica carinata HOM05D000747 ORTHO05D001683 4.2e-86 322.8 435 49.0
Dinv42593 Davidia involucrata HOM05D000747 ORTHO05D001683 4.6e-85 319.3 424 48.6
BolC9t55169H Brassica oleracea HOM05D000747 ORTHO05D001683 7.9e-85 318.5 451 47.0
Lsat_1_v5_gn_6_107380 Lactuca sativa HOM05D000747 ORTHO05D001683 1.3e-84 317.8 428 58.6
DCAR_009555 Daucus carota HOM05D000747 ORTHO05D001683 2.3e-84 317.0 422 50.7
SGA_v2.0_scaffold74G24548 Striga asiatica HOM05D000747 ORTHO05D001683 7.4e-83 312.0 418 56.2
Lj4C86T7 Lonicera japonica HOM05D000747 ORTHO05D001683 3.7e-82 309.7 425 46.4
Os12g0428600 Oryza sativa ssp. japonica HOM05D000747 ORTHO05D001683 1.4e-81 307.8 408 56.1
Solyc04g076620.4 Solanum lycopersicum HOM05D000747 ORTHO05D001683 1.2e-80 304.7 394 56.9
AUR62014369 Chenopodium quinoa HOM05D000747 ORTHO05D001683 3.8e-79 299.7 427 45.9
ClCG08G011550 Citrullus lanatus HOM05D000747 ORTHO05D001683 1.2e-77 294.7 426 43.9
HanXRQChr05g0163491 Helianthus annuus HOM05D000747 ORTHO05D001683 1.9e-75 287.3 413 55.9
vmacro04636 Vaccinium macrocarpon HOM05D000747 ORTHO05D001683 1.6e-74 284.3 426 43.0
MBI16_g07279_MAGBIO Magnolia biondii HOM05D000747 ORTHO05D001683 2.8e-74 283.5 480 39.8
BraA09t37446Z Brassica rapa HOM05D000747 ORTHO05D001683 1.4e-73 281.2 340 60.9
Zm00001eb409870 Zea mays HOM05D000747 ORTHO05D001683 6.5e-71 272.3 412 49.3
DCAR_020028 Daucus carota HOM05D000747 ORTHO05D001683 9.4e-70 268.5 422 41.5
Zm00001eb133420 Zea mays HOM05D000747 ORTHO05D001683 1.2e-69 268.1 402 51.2
Lalb_Chr04g0252751 Lupinus albus HOM05D000747 ORTHO05D001683 3.7e-66 256.5 283 61.1
AUR62019112 Chenopodium quinoa HOM05D000747 ORTHO05D001683 1.6e-61 241.1 427 41.0
HPP92_024550 Vanilla planifolia HOM05D000747 ORTHO05D001683 2.2e-42 177.6 306 51.6
SEGI_10423 Sequoiadendron giganteum HOM05D000747 ORTHO05D001683 1.2e-40 171.8 409 44.7
A09p18070 Brassica napus HOM05D000747 ORTHO05D001683 6.1e-37 159.5 172 54.1
C09p22570 Brassica napus HOM05D000747 ORTHO05D001683 1.8e-28 131.3 130 57.7
SalBow7G0174 Salvia bowleyana HOM05D000747 ORTHO05D001683 5.4e-25 119.8 416 28.4
Actinidia21212 Actinidia chinensis HOM05D000747 ORTHO05D053305 1.4e-20 105.1 215 38.1
A09p18110 Brassica napus HOM05D000747 ORTHO05D001683 4.9e-18 96.7 169 63.9
C09p22590 Brassica napus HOM05D000747 ORTHO05D001683 1.3e-15 88.6 105 45.7
Lsat_1_v5_gn_1_108300 Lactuca sativa HOM05D000747 ORTHO05D015226 1.7e-15 88.2 71 66.2
Pp3c11_25020 Physcomitrium patens HOM05D000747 ORTHO05D001683 8.9e-12 75.9 346 33.8
TAR626G0075 Trochodendron aralioides HOM05D000747 ORTHO05D001683 3.7e-10 70.5 493 31.6
ECA247G1373 Erigeron canadensis HOM05D000583 ORTHO05D001683 6.4e-10 69.7 74 50.0
Lalb_Chr04g0252761 Lupinus albus HOM05D000747 ORTHO05D001683 1.1e-09 68.9 64 51.6
Nn1g07530 Nelumbo nucifera HOM05D000747 ORTHO05D001683 2.4e-09 67.8 474 32.7
Pp3c7_8070 Physcomitrium patens HOM05D000747 ORTHO05D001683 2.4e-09 67.8 351 38.2
Pp3c7_8076 Physcomitrium patens HOM05D000747 ORTHO05D001683 3.2e-09 67.4 353 37.7
PSO675G3434 Papaver somniferum HOM05D000747 ORTHO05D001683 7.1e-09 66.2 491 29.9
PSO541G0267 Papaver somniferum HOM05D000747 ORTHO05D001683 2.7e-08 64.3 491 29.7
SalBow8G3694 Salvia bowleyana HOM05D000747 ORTHO05D001683 7.8e-08 62.8 488 32.0
CSS0034444 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D001683 1.7e-07 61.6 460 32.6
CSS0037654 Camellia sinensis var. sinensis HOM05D000747 ORTHO05D001683 1.7e-07 61.6 460 32.6
CsaV3_3G004200 Cucumis sativus L. HOM05D000747 ORTHO05D001683 3.0e-07 60.8 474 28.7
SalBow8G4314 Salvia bowleyana HOM05D000747 ORTHO05D001683 3.0e-07 60.8 486 32.3
MSTRG.7001 Avicennia marina HOM05D000747 ORTHO05D001683 1.1e-06 58.9 486 30.9
ClCG10G004420 Citrullus lanatus HOM05D000747 ORTHO05D001683 1.1e-06 58.9 467 28.1
MELO3C014115.2 Cucumis melo HOM05D000747 ORTHO05D001683 1.5e-06 58.5 475 28.4
CiPaw.12G138800 Carya illinoinensis HOM05D000747 ORTHO05D001683 1.9e-06 58.2 477 30.0
Manes.15G059000 Manihot esculenta HOM05D000747 ORTHO05D001683 2.5e-06 57.8 476 26.5
FvH4_3g42950 Fragaria vesca HOM05D000747 ORTHO05D001683 5.6e-06 56.6 476 30.9
FAN11G2391 Fragaria x ananassa HOM05D000747 ORTHO05D001683 5.6e-06 56.6 476 30.9
FAN25G0789 Fragaria x ananassa HOM05D000747 ORTHO05D001683 5.6e-06 56.6 479 29.9
Potri.001G368600 Populus trichocarpa HOM05D000747 ORTHO05D001683 5.6e-06 56.6 416 29.6
SEGI_19221 Sequoiadendron giganteum HOM05D000747 ORTHO05D001683 5.6e-06 56.6 491 29.5
AagrBONN_evm.TU.Sc2ySwM_344.3333 Anthoceros agrestis HOM05D000747 ORTHO05D001683 9.5e-06 55.8 357 36.4
Nn1g03156 Nelumbo nucifera HOM05D000747 ORTHO05D001683 9.5e-06 55.8 479 29.9


User provided reference genes

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