Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G0327 Fragaria x ananassa HOM05D004799 ORTHO05D005500 3.6e-105 385.2 235 100.0
FvH4_5g30080 Fragaria vesca HOM05D004799 ORTHO05D005500 4.0e-104 381.7 235 89.4
FAN13G3307 Fragaria x ananassa HOM05D004799 ORTHO05D005500 2.0e-103 379.4 235 88.9
FAN04G2475 Fragaria x ananassa HOM05D004799 ORTHO05D005500 7.6e-103 377.5 236 88.6
FAN18G4597 Fragaria x ananassa HOM05D004799 ORTHO05D005500 8.4e-102 374.0 244 86.1
RcHm_v2.0_Chr7g0224271 Rosa chinensis HOM05D004799 ORTHO05D005500 1.2e-95 353.6 235 83.8
MD08G1225100 Malus domestica HOM05D004799 ORTHO05D005500 2.4e-72 276.2 229 69.4
MD15G1418700 Malus domestica HOM05D004799 ORTHO05D005500 3.8e-70 268.9 230 68.7
Cfa005544 Carpinus fangiana HOM05D004799 ORTHO05D005500 5.9e-63 245.0 226 63.3
Duzib132G0636 Durio zibethinus HOM05D004799 ORTHO05D005500 8.5e-62 241.1 230 60.4
Duzib248G0546 Durio zibethinus HOM05D004799 ORTHO05D005500 1.1e-61 240.7 229 60.7
Haze_01626 Corylus avellana HOM05D004799 ORTHO05D005500 9.4e-61 237.7 226 61.9
Potri.001G209100 Populus trichocarpa HOM05D004799 ORTHO05D005500 6.1e-60 235.0 226 62.4
Sabra01G0161300 Salix brachista HOM05D004799 ORTHO05D005500 6.1e-60 235.0 241 58.5
Gohir.A01G177000 Gossypium hirsutum HOM05D004799 ORTHO05D005500 7.9e-60 234.6 230 60.4
QL02p098623 Quercus lobata HOM05D004799 ORTHO05D005500 3.9e-59 232.3 254 56.3
Manes.10G132000 Manihot esculenta HOM05D004799 ORTHO05D005500 5.1e-59 231.9 223 62.8
Thecc.02G041200 Theobroma cacao HOM05D004799 ORTHO05D005500 5.1e-59 231.9 230 67.4
Gohir.A03G210900 Gossypium hirsutum HOM05D004799 ORTHO05D005500 1.1e-58 230.7 230 57.8
Sabra03G0013400 Salix brachista HOM05D004799 ORTHO05D005500 3.3e-58 229.2 228 58.8
Cpa.g.sc2.26 Carica papaya HOM05D004799 ORTHO05D005500 9.7e-58 227.6 225 60.9
GSVIVG01023017001 Vitis vinifera HOM05D004799 ORTHO05D005500 9.7e-58 227.6 227 59.0
Gorai.002G208500 Gossypium raimondii HOM05D004799 ORTHO05D005500 1.7e-57 226.9 230 58.3
Gohir.D01G167800 Gossypium hirsutum HOM05D004799 ORTHO05D005500 2.2e-57 226.5 230 58.3
CiPaw.06G148900 Carya illinoinensis HOM05D004799 ORTHO05D005500 2.8e-57 226.1 229 59.0
Lalb_Chr07g0185691 Lupinus albus HOM05D004799 ORTHO05D005500 2.8e-57 226.1 216 59.3
Manes.07G013800 Manihot esculenta HOM05D004799 ORTHO05D005500 6.3e-57 224.9 232 60.8
Ciclev10002345m.g Citrus clementina HOM05D004799 ORTHO05D005500 3.1e-56 222.6 233 58.8
Lalb_Chr12g0204381 Lupinus albus HOM05D004799 ORTHO05D005500 1.2e-55 220.7 222 58.1
CiPaw.05G042800 Carya illinoinensis HOM05D004799 ORTHO05D005500 1.4e-53 213.8 275 50.5
Cc02_g22290 Coffea canephora HOM05D004799 ORTHO05D005500 1.2e-52 210.7 223 57.8
Dinv19352 Davidia involucrata HOM05D004799 ORTHO05D005500 1.2e-52 210.7 232 56.9
Eucgr.I02711 Eucalyptus grandis HOM05D004799 ORTHO05D005500 1.2e-52 210.7 231 57.1
arahy.Tifrunner.gnm1.ann1.ZS42GJ Arachis hypogaea HOM05D004799 ORTHO05D005500 1.0e-51 207.6 224 57.6
Potri.003G021500 Populus trichocarpa HOM05D004799 ORTHO05D005500 1.0e-51 207.6 218 56.9
arahy.Tifrunner.gnm1.ann1.BG3XJE Arachis hypogaea HOM05D004799 ORTHO05D005500 1.8e-51 206.8 224 57.1
Gohir.D02G232500 Gossypium hirsutum HOM05D004799 ORTHO05D005500 2.3e-51 206.5 230 54.8
Gorai.005G260300 Gossypium raimondii HOM05D004799 ORTHO05D005500 5.1e-51 205.3 230 54.3
Lj5A248T74 Lonicera japonica HOM05D004799 ORTHO05D005500 5.1e-51 205.3 229 58.1
MSTRG.27841 Avicennia marina HOM05D004799 ORTHO05D005500 3.3e-50 202.6 232 54.3
Peaxi162Scf00011g00139 Petunia axillaris HOM05D004799 ORTHO05D005500 4.4e-50 202.2 231 55.8
Sopen01g046960 Solanum pennellii HOM05D004799 ORTHO05D005500 7.4e-50 201.4 225 55.6
PGSC0003DMG400023776 Solanum tuberosum HOM05D004799 ORTHO05D005500 7.4e-50 201.4 225 55.6
CANSAT11G1940 Cannabis sativa HOM05D004799 ORTHO05D005500 9.7e-50 201.1 232 53.4
TAR628G0692 Trochodendron aralioides HOM05D004799 ORTHO05D005500 9.7e-50 201.1 228 54.4
Atru.chr6.1081 Acer truncatum HOM05D004799 ORTHO05D005500 2.8e-49 199.5 204 58.8
CsaV3_7G007080 Cucumis sativus L. HOM05D004799 ORTHO05D005500 2.8e-49 199.5 230 53.5
THA.LOC104809537 Tarenaya hassleriana HOM05D004799 ORTHO05D005500 3.7e-49 199.1 225 54.7
CAN.G1352.25 Capsicum annuum HOM05D004799 ORTHO05D005500 6.3e-49 198.4 234 60.3
ClCG09G016220 Citrullus lanatus HOM05D004799 ORTHO05D005500 1.4e-48 197.2 224 55.8
MELO3C018586.2 Cucumis melo HOM05D004799 ORTHO05D005500 1.8e-48 196.8 231 53.7
Sc14g0006850 Simmondsia chinensis HOM05D004799 ORTHO05D005500 1.8e-48 196.8 233 53.2
CSS0024882 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 3.1e-48 196.1 183 63.9
CSS0037217 Camellia sinensis var. sinensis HOM05D004799 ORTHO05D005500 3.1e-48 196.1 183 63.9
Nitab4.5_0010140g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 7.0e-48 194.9 226 61.1
CsaV3_5G024750 Cucumis sativus L. HOM05D004799 ORTHO05D005500 9.1e-48 194.5 218 55.0
Hma1.2p1_0217F.1_g091930 Hydrangea macrophylla HOM05D004799 ORTHO05D005500 1.6e-47 193.7 228 54.4
Migut.B00668 Erythranthe guttata HOM05D004799 ORTHO05D005500 4.5e-47 192.2 233 52.8
TWI59G1038 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 4.5e-47 192.2 219 54.8
Dinv24262 Davidia involucrata HOM05D004799 ORTHO05D005500 1.3e-46 190.7 232 52.2
TAR376G0767 Trochodendron aralioides HOM05D004799 ORTHO05D005500 8.5e-46 188.0 231 51.9
DCAR_005625 Daucus carota HOM05D004799 ORTHO05D005500 1.5e-45 187.2 223 53.4
Oeu012743.2 Olea europaea HOM05D004799 ORTHO05D005500 1.5e-45 187.2 245 50.6
Lj6g0003329 Lotus japonicus HOM05D004799 ORTHO05D005500 1.9e-45 186.8 220 52.7
Nitab4.5_0005539g0010 Nicotiana tabacum HOM05D004799 ORTHO05D005500 2.5e-45 186.4 226 62.8
AUR62018552 Chenopodium quinoa HOM05D004799 ORTHO05D005500 7.2e-45 184.9 227 50.7
Hund19012 Selenicereus undatus HOM05D004799 ORTHO05D005500 2.1e-44 183.3 228 50.4
vmacro01776 Vaccinium macrocarpon HOM05D004799 ORTHO05D005500 3.6e-44 182.6 255 47.1
ATR0684G092 Amborella trichopoda HOM05D004799 ORTHO05D005500 8.0e-44 181.4 216 54.2
AUR62020867 Chenopodium quinoa HOM05D004799 ORTHO05D005500 1.0e-43 181.0 227 49.3
Prupe.1G562800 Prunus persica HOM05D004799 ORTHO05D005500 1.8e-43 180.3 165 66.7
Oeu008877.2 Olea europaea HOM05D004799 ORTHO05D005500 3.0e-43 179.5 260 46.5
Ah.04g149450 Amaranthus hybridus HOM05D004799 ORTHO05D005500 8.8e-43 177.9 229 49.8
SGA_v2.0_scaffold110G31288 Striga asiatica HOM05D004799 ORTHO05D005500 8.8e-43 177.9 234 48.3
TWI23G0644 Tripterygium wilfordii HOM05D004799 ORTHO05D005500 1.1e-42 177.6 229 49.8
Medtr2g007770 Medicago truncatula HOM05D004799 ORTHO05D005500 3.3e-42 176.0 212 53.3
EL10Ac3g07450 Beta vulgaris HOM05D004799 ORTHO05D005500 9.7e-42 174.5 214 50.9
Lsat_1_v5_gn_9_116381 Lactuca sativa HOM05D004799 ORTHO05D005500 1.3e-41 174.1 228 51.8
Carub.0001s1103 Capsella rubella HOM05D004799 ORTHO05D005500 1.7e-41 173.7 223 52.5
Sp1g10030 Schrenkiella parvula HOM05D004799 ORTHO05D005500 2.2e-41 173.3 231 49.8
Actinidia39055 Actinidia chinensis HOM05D004799 ORTHO05D005500 4.8e-41 172.2 185 57.3
Glyma.08G128300 Glycine max HOM05D004799 ORTHO05D005500 1.4e-40 170.6 222 51.8
Aqoxy6G00151 Aquilegia oxysepala HOM05D004799 ORTHO05D005500 1.8e-40 170.2 230 52.2
Aa31LG1G3310 Aethionema arabicum HOM05D004799 ORTHO05D005500 1.6e-39 167.2 224 48.7
PSO528G0257 Papaver somniferum HOM05D004799 ORTHO05D005500 2.7e-39 166.4 220 54.5
HanXRQChr03g0066881 Helianthus annuus HOM05D004799 ORTHO05D005500 3.5e-39 166.0 232 48.7
Sed0004816 Sechium edule HOM05D004799 ORTHO05D005500 3.5e-39 166.0 232 48.7
VMungo0251G3647 Vigna mungo HOM05D004799 ORTHO05D005500 4.5e-39 165.6 222 50.9
TPR.G2141 Trifolium pratense HOM05D004799 ORTHO05D005500 7.7e-39 164.9 230 47.4
BraA08t35264Z Brassica rapa HOM05D004799 ORTHO05D005500 1.3e-38 164.1 222 49.1
A08p33480 Brassica napus HOM05D004799 ORTHO05D005500 2.9e-38 162.9 222 48.6
Rhsim11G0131600 Rhododendron simsii HOM05D004799 ORTHO05D005500 2.9e-38 162.9 329 38.9
Nn5g28066 Nelumbo nucifera HOM05D004799 ORTHO05D005500 3.8e-38 162.5 194 55.2
C08p14470 Brassica napus HOM05D004799 ORTHO05D005500 1.9e-37 160.2 222 48.2
Psat1g220000 Pisum sativum HOM05D004799 ORTHO05D005500 2.5e-37 159.8 216 50.5
unitig_26.g9556 Utricularia gibba HOM05D004799 ORTHO05D005500 2.5e-37 159.8 217 49.3
COL.COLO4_17895 Corchorus olitorius HOM05D004799 ORTHO05D005500 7.2e-37 158.3 230 46.1
Actinidia00218 Actinidia chinensis HOM05D004799 ORTHO05D005500 9.4e-37 157.9 229 48.9
Glyma.05G170200 Glycine max HOM05D004799 ORTHO05D005500 1.6e-36 157.1 222 48.2
BcaC07g38663 Brassica carinata HOM05D004799 ORTHO05D005500 2.1e-36 156.8 222 47.3
BolC8t49096H Brassica oleracea HOM05D004799 ORTHO05D005500 2.1e-36 156.8 222 47.3
BcaB03g13259 Brassica carinata HOM05D004799 ORTHO05D005500 3.0e-35 152.9 231 46.3
Zm00001eb011470 Zea mays HOM05D004799 ORTHO05D005500 8.8e-35 151.4 229 47.2
Lsat_1_v5_gn_7_77960 Lactuca sativa HOM05D004799 ORTHO05D005500 2.6e-34 149.8 228 46.5
HPP92_019221 Vanilla planifolia HOM05D004799 ORTHO05D005500 4.4e-34 149.1 220 46.8
AL1G22490 Arabidopsis lyrata HOM05D004799 ORTHO05D005500 5.7e-34 148.7 231 46.8
CARHR011640 Cardamine hirsuta HOM05D004799 ORTHO05D005500 3.7e-33 146.0 214 47.2
Ca_00089_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 4.8e-33 145.6 248 42.3
Ca_29928_v3 Cicer arietinum L. HOM05D004799 ORTHO05D005500 4.8e-33 145.6 248 42.3
CDE02G4357 Ceratophyllum demersum HOM05D004799 ORTHO05D005500 1.1e-32 144.4 219 47.0
Phvul.002G251000 Phaseolus vulgaris HOM05D004799 ORTHO05D005500 1.4e-32 144.1 226 46.0
AT1G11400 Arabidopsis thaliana HOM05D004799 ORTHO05D005500 4.1e-32 142.5 226 44.7
PSO170G0171 Papaver somniferum HOM05D004799 ORTHO05D005500 2.0e-31 140.2 221 52.9
A06p08020 Brassica napus HOM05D004799 ORTHO05D005500 2.9e-30 136.3 223 43.5
BraA06t24001Z Brassica rapa HOM05D004799 ORTHO05D005500 2.9e-30 136.3 223 43.5
Os03g0262100 Oryza sativa ssp. japonica HOM05D004799 ORTHO05D005500 2.9e-30 136.3 225 44.0
BcaC05g25015 Brassica carinata HOM05D004799 ORTHO05D005500 6.5e-30 135.2 232 44.0
C05p09620 Brassica napus HOM05D004799 ORTHO05D005500 6.5e-30 135.2 232 44.0
BolC5t29704H Brassica oleracea HOM05D004799 ORTHO05D005500 6.5e-30 135.2 232 44.0
SEGI_10500 Sequoiadendron giganteum HOM05D004799 ORTHO05D005500 8.8e-27 124.8 100 70.0
Thhalv10008698m.g Eutrema salsugineum HOM05D004799 ORTHO05D005500 1.2e-26 124.4 219 41.6
SalBow6G1776 Salvia bowleyana HOM05D004799 ORTHO05D005500 7.5e-26 121.7 225 41.8
SalBow6G5744 Salvia bowleyana HOM05D004799 ORTHO05D005500 7.5e-26 121.7 225 41.8
MBI03_g11149_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 1.8e-24 117.1 301 36.5
Nn1g08619 Nelumbo nucifera HOM05D004799 ORTHO05D005500 2.4e-24 116.7 165 46.7
Glyma.14G170300 Glycine max HOM05D004799 ORTHO05D005500 1.2e-23 114.4 153 52.3
ECA240G2283 Erigeron canadensis HOM05D004799 ORTHO05D005500 1.0e-22 111.3 218 38.5
Atru.chr6.1045 Acer truncatum HOM05D004799 ORTHO05D005500 4.3e-21 105.9 124 52.4
HPP92_009361 Vanilla planifolia HOM05D004799 ORTHO05D005500 2.0e-18 97.1 224 36.2
MSTRG.16532 Avicennia marina HOM05D004799 ORTHO05D005500 4.4e-18 95.9 159 47.8
Mapoly0065s0027 Marchantia polymorpha HOM05D004799 ORTHO05D005500 3.5e-15 86.3 209 36.8
arahy.Tifrunner.gnm1.ann1.DUW5WJ Arachis hypogaea HOM05D004799 ORTHO05D005500 6.6e-14 82.0 84 59.5
Lj9C308T7 Lonicera japonica HOM05D004799 ORTHO05D005500 3.3e-13 79.7 144 41.0
CBR_g22015 Chara braunii HOM05D004799 ORTHO05D005500 5.6e-13 79.0 252 31.7
AagrBONN_evm.TU.Sc2ySwM_344.2060 Anthoceros agrestis HOM05D004799 ORTHO05D005500 7.3e-13 78.6 77 54.5
Ah.13g077920 Amaranthus hybridus HOM05D004799 ORTHO05D005500 1.4e-11 74.3 155 35.5
Zm00001eb398170 Zea mays HOM05D004799 ORTHO05D005500 5.2e-11 72.4 158 39.2
SMO367G0479 Selaginella moellendorffii HOM05D004799 ORTHO05D005500 7.5e-10 68.6 48 72.9
MBI03_g11127_MAGBIO Magnolia biondii HOM05D004799 ORTHO05D005500 2.9e-09 66.6 131 42.7
A09p63310 Brassica napus HOM05D004799 ORTHO05D005500 1.0e-06 58.2 58 58.6
BraA09t41682Z Brassica rapa HOM05D004799 ORTHO05D005500 1.0e-06 58.2 58 58.6
Lj5A250G20 Lonicera japonica HOM05D012292 ORTHO05D012234 2.3e-06 57.0 63 46.0
Lj5A252G43 Lonicera japonica HOM05D012292 ORTHO05D012234 2.3e-06 57.0 93 41.9
Cre06.g279250 Chlamydomonas reinhardtii HOM05D004799 ORTHO05D005500 3.9e-06 56.2 69 42.0


User provided reference genes

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