Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G0180 Fragaria x ananassa HOM05D005670 ORTHO05D007612 5.1e-173 610.9 293 100.0
FAN21G0121 Fragaria x ananassa HOM05D005670 ORTHO05D007612 2.6e-121 439.1 318 72.0
FvH4_3g09410 Fragaria vesca HOM05D005670 ORTHO05D007612 2.5e-119 432.6 318 71.1
FAN16G2869 Fragaria x ananassa HOM05D005670 ORTHO05D007612 1.2e-118 430.3 314 71.3
RcHm_v2.0_Chr5g0008181 Rosa chinensis HOM05D005670 ORTHO05D007612 2.4e-114 416.0 314 68.8
Prupe.4G045000 Prunus persica HOM05D005670 ORTHO05D007612 1.5e-100 370.2 314 62.7
MD05G1314100 Malus domestica HOM05D005670 ORTHO05D007612 2.0e-100 369.8 314 62.1
FAN11G1478 Fragaria x ananassa HOM05D005670 ORTHO05D007612 2.4e-98 362.8 272 69.1
MD00G1095000 Malus domestica HOM05D005670 ORTHO05D007612 9.1e-98 360.9 313 59.4
QL05p039856 Quercus lobata HOM05D005670 ORTHO05D007612 4.5e-97 358.6 314 59.2
Duzib192G0381 Durio zibethinus HOM05D005670 ORTHO05D007612 2.1e-94 349.7 313 57.2
CiPaw.09G058400 Carya illinoinensis HOM05D005670 ORTHO05D007612 2.8e-94 349.4 314 57.3
Ciclev10014972m.g Citrus clementina HOM05D005670 ORTHO05D007612 2.8e-94 349.4 313 57.5
Lj1A1206G64 Lonicera japonica HOM05D005670 ORTHO05D007612 2.8e-94 349.4 314 56.7
Gorai.011G026800 Gossypium raimondii HOM05D005670 ORTHO05D007612 4.0e-93 345.5 316 57.3
Gohir.A10G024800 Gossypium hirsutum HOM05D005670 ORTHO05D007612 8.9e-93 344.4 316 57.6
Gohir.D10G025500 Gossypium hirsutum HOM05D005670 ORTHO05D007612 7.5e-92 341.3 316 56.6
Cpa.g.sc27.55 Carica papaya HOM05D005670 ORTHO05D007612 9.8e-92 340.9 313 56.9
Potri.004G041800 Populus trichocarpa HOM05D005670 ORTHO05D007612 9.8e-92 340.9 313 57.2
TAR626G1957 Trochodendron aralioides HOM05D005670 ORTHO05D007612 9.8e-92 340.9 317 57.1
Rhsim02G0128200 Rhododendron simsii HOM05D005670 ORTHO05D007612 4.9e-91 338.6 313 56.5
CSS0005949 Camellia sinensis var. sinensis HOM05D005670 ORTHO05D007612 8.3e-91 337.8 314 57.0
TWI38G1891 Tripterygium wilfordii HOM05D005670 ORTHO05D007612 8.3e-91 337.8 314 56.7
MSTRG.7329 Avicennia marina HOM05D005670 ORTHO05D007612 1.1e-90 337.4 313 57.5
Thecc.06G189700 Theobroma cacao HOM05D005670 ORTHO05D007612 1.2e-89 334.0 313 56.9
Psat1g206560 Pisum sativum HOM05D005670 ORTHO05D007612 2.7e-89 332.8 314 55.4
Glyma.15G072900 Glycine max HOM05D005670 ORTHO05D007612 3.5e-89 332.4 314 53.8
Atru.chr10.1904 Acer truncatum HOM05D005670 ORTHO05D007612 1.3e-88 330.5 317 54.9
DCAR_004080 Daucus carota HOM05D005670 ORTHO05D007612 1.7e-88 330.1 314 55.7
Eucgr.E03319 Eucalyptus grandis HOM05D005670 ORTHO05D007612 3.9e-88 328.9 314 54.8
Sopen02g023260 Solanum pennellii HOM05D005670 ORTHO05D007612 3.9e-88 328.9 314 54.8
Medtr2g013060 Medicago truncatula HOM05D005670 ORTHO05D007612 5.0e-88 328.6 314 54.1
Manes.16G026300 Manihot esculenta HOM05D005670 ORTHO05D007612 6.6e-88 328.2 314 56.4
Glyma.13G240600 Glycine max HOM05D005670 ORTHO05D007612 8.6e-88 327.8 314 52.5
TPR.G36745 Trifolium pratense HOM05D005670 ORTHO05D007612 8.6e-88 327.8 314 54.8
Lj6g0007385 Lotus japonicus HOM05D005670 ORTHO05D007612 1.1e-87 327.4 314 54.8
COL.COLO4_31493 Corchorus olitorius HOM05D005670 ORTHO05D008858 1.9e-87 326.6 307 54.7
Solyc02g078400.3 Solanum lycopersicum HOM05D005670 ORTHO05D007612 1.9e-87 326.6 314 54.5
SGA_v2.0_scaffold22G09723 Striga asiatica HOM05D005670 ORTHO05D007612 1.9e-87 326.6 314 55.7
Phvul.006G186800 Phaseolus vulgaris HOM05D005670 ORTHO05D007612 3.3e-87 325.9 313 54.0
Nitab4.5_0005954g0030 Nicotiana tabacum HOM05D005670 ORTHO05D007612 4.3e-87 325.5 312 55.4
Ca_00305_v3 Cicer arietinum L. HOM05D005670 ORTHO05D007612 5.6e-87 325.1 314 54.5
PSO675G5775 Papaver somniferum HOM05D005670 ORTHO05D007612 7.3e-87 324.7 314 53.5
BolC9t56124H Brassica oleracea HOM05D005670 ORTHO05D007612 1.2e-86 323.9 313 55.3
PGSC0003DMG400022386 Solanum tuberosum HOM05D005670 ORTHO05D007612 1.2e-86 323.9 330 53.0
Nn1g06587 Nelumbo nucifera HOM05D005670 ORTHO05D007612 1.6e-86 323.6 312 55.1
A09p25930 Brassica napus HOM05D005670 ORTHO05D007612 2.1e-86 323.2 313 55.0
BraA09t38162Z Brassica rapa HOM05D005670 ORTHO05D007612 2.1e-86 323.2 313 55.0
Lalb_Chr15g0089871 Lupinus albus HOM05D005670 ORTHO05D007612 2.8e-86 322.8 314 53.8
AUR62014803 Chenopodium quinoa HOM05D005670 ORTHO05D007612 4.7e-86 322.0 309 55.3
BcaC04g21352 Brassica carinata HOM05D005670 ORTHO05D007612 6.1e-86 321.6 313 55.0
C09p32840 Brassica napus HOM05D005670 ORTHO05D007612 6.1e-86 321.6 313 55.0
Glyma.13G240500 Glycine max HOM05D005670 ORTHO05D007612 6.1e-86 321.6 314 52.5
VMungo0540G1414 Vigna mungo HOM05D005670 ORTHO05D007612 1.0e-85 320.9 314 52.5
BcaB01g01850 Brassica carinata HOM05D005670 ORTHO05D007612 1.4e-85 320.5 313 55.0
Aqoxy1G02519 Aquilegia oxysepala HOM05D005670 ORTHO05D007612 1.8e-85 320.1 314 55.1
Thhalv10028578m.g Eutrema salsugineum HOM05D005670 ORTHO05D007612 2.3e-85 319.7 313 54.6
Nitab4.5_0002158g0080 Nicotiana tabacum HOM05D005670 ORTHO05D007612 3.1e-85 319.3 312 54.8
VMungo0540G1652 Vigna mungo HOM05D005670 ORTHO05D007612 3.1e-85 319.3 313 52.4
CAN.G1164.15 Capsicum annuum HOM05D005670 ORTHO05D007612 5.2e-85 318.5 330 52.4
Phvul.006G186700 Phaseolus vulgaris HOM05D005670 ORTHO05D007612 5.2e-85 318.5 314 53.2
AUR62016994 Chenopodium quinoa HOM05D005670 ORTHO05D007612 6.8e-85 318.2 314 54.1
Lsat_1_v5_gn_7_18941 Lactuca sativa HOM05D005670 ORTHO05D007612 6.8e-85 318.2 313 53.7
CANSAT35G0124 Cannabis sativa HOM05D005670 ORTHO05D007612 1.2e-84 317.4 313 54.0
Zm00001eb433900 Zea mays HOM05D005670 ORTHO05D007612 1.2e-84 317.4 317 51.4
THA.LOC104812854 Tarenaya hassleriana HOM05D005670 ORTHO05D007612 2.0e-84 316.6 314 54.1
AT4G04955 Arabidopsis thaliana HOM05D005670 ORTHO05D007612 2.6e-84 316.2 308 54.2
Sp6g04000 Schrenkiella parvula HOM05D005670 ORTHO05D007612 4.4e-84 315.5 313 54.0
AL6G48490 Arabidopsis lyrata HOM05D005670 ORTHO05D007612 7.5e-84 314.7 308 54.2
Carub.0006s3289 Capsella rubella HOM05D005670 ORTHO05D007612 7.5e-84 314.7 308 54.2
Glyma.15G073000 Glycine max HOM05D005670 ORTHO05D007612 9.8e-84 314.3 314 51.9
Sed0013715 Sechium edule HOM05D005670 ORTHO05D007612 9.8e-84 314.3 313 53.4
Sc05g0007760 Simmondsia chinensis HOM05D005670 ORTHO05D007612 9.8e-84 314.3 314 53.5
PGR042G2793 Punica granatum HOM05D005670 ORTHO05D007612 2.2e-83 313.2 315 52.7
CARHR252570 Cardamine hirsuta HOM05D005670 ORTHO05D007612 2.9e-83 312.8 308 53.6
CDE09G0528 Ceratophyllum demersum HOM05D005670 ORTHO05D007612 3.7e-83 312.4 315 52.4
EL10Ac8g20366 Beta vulgaris HOM05D005670 ORTHO05D007612 8.3e-83 311.2 314 53.5
arahy.Tifrunner.gnm1.ann1.RER6EK Arachis hypogaea HOM05D005670 ORTHO05D007612 1.1e-82 310.8 310 54.2
Peaxi162Scf00947g00005 Petunia axillaris HOM05D005670 ORTHO05D007612 1.1e-82 310.8 314 53.5
Aa31LG9G9510 Aethionema arabicum HOM05D005670 ORTHO05D007612 1.4e-82 310.5 313 53.0
THA.LOC104806286 Tarenaya hassleriana HOM05D005670 ORTHO05D007612 1.4e-82 310.5 317 53.0
HanXRQChr04g0124101 Helianthus annuus HOM05D005670 ORTHO05D007612 5.4e-82 308.5 313 52.4
Hund23715 Selenicereus undatus HOM05D005670 ORTHO05D007612 1.2e-81 307.4 313 54.3
arahy.Tifrunner.gnm1.ann1.06VRVW Arachis hypogaea HOM05D005670 ORTHO05D007612 2.7e-81 306.2 310 53.9
ECA236G2993 Erigeron canadensis HOM05D005670 ORTHO05D007612 3.5e-81 305.8 313 52.4
ATR0680G385 Amborella trichopoda HOM05D005670 ORTHO05D007612 4.6e-81 305.4 322 51.2
MBI18_g16998_MAGBIO Magnolia biondii HOM05D005670 ORTHO05D007612 1.0e-80 304.3 313 51.1
ClCG03G005950 Citrullus lanatus HOM05D005670 ORTHO05D007612 1.3e-80 303.9 330 50.6
CsaV3_1G012190 Cucumis sativus L. HOM05D005670 ORTHO05D007612 3.9e-80 302.4 315 50.8
Sabra04G0025900 Salix brachista HOM05D005670 ORTHO05D007612 1.9e-79 300.1 280 56.1
unitig_22.g6763 Utricularia gibba HOM05D005670 ORTHO05D007612 1.4e-77 293.9 309 51.8
HPP92_014737 Vanilla planifolia HOM05D005670 ORTHO05D007612 2.3e-77 293.1 317 49.5
Haze_06486 Corylus avellana HOM05D005670 ORTHO05D007612 5.2e-77 292.0 283 53.4
Sed0017986 Sechium edule HOM05D005670 ORTHO05D007612 6.8e-77 291.6 316 51.6
Cc02_g13200 Coffea canephora HOM05D005670 ORTHO05D007612 7.0e-74 281.6 275 54.5
Migut.M01152 Erythranthe guttata HOM05D005670 ORTHO05D007612 2.1e-73 280.0 284 54.9
Mapoly0068s0105 Marchantia polymorpha HOM05D005670 ORTHO05D007612 2.4e-66 256.5 318 42.8
Mapoly0156s0028 Marchantia polymorpha HOM05D005670 ORTHO05D007612 2.4e-66 256.5 318 42.8
vmacro15902 Vaccinium macrocarpon HOM05D005670 ORTHO05D007612 2.4e-66 256.5 203 63.1
Pp3c2_7120 Physcomitrium patens HOM05D005670 ORTHO05D007612 1.3e-64 250.8 313 43.8
Ah.09g237260 Amaranthus hybridus HOM05D005670 ORTHO05D007612 2.5e-63 246.5 280 48.6
AagrBONN_evm.TU.Sc2ySwM_344.2129 Anthoceros agrestis HOM05D005670 ORTHO05D007612 2.5e-63 246.5 332 42.2
CBR_g34175 Chara braunii HOM05D005670 ORTHO05D007612 7.3e-63 245.0 317 42.0
Pp3c14_11050 Physcomitrium patens HOM05D005670 ORTHO05D007612 1.2e-60 237.7 312 39.7
FAN18G0055 Fragaria x ananassa HOM05D005670 ORTHO05D007612 3.8e-59 232.6 282 49.6
MELO3C002593.2 Cucumis melo HOM05D005670 ORTHO05D007612 1.1e-53 214.5 294 43.2
SMO145G0108 Selaginella moellendorffii HOM05D005670 ORTHO05D007612 1.5e-52 210.7 319 37.9
Dinv07547 Davidia involucrata HOM05D005670 ORTHO05D007612 8.1e-46 188.3 179 54.2
HPP92_014748 Vanilla planifolia HOM05D005670 ORTHO05D007612 5.8e-44 182.2 200 46.5
Pp3c17_10590 Physcomitrium patens HOM05D005670 ORTHO05D007612 9.9e-44 181.4 205 44.4
MCO09G610 Micromonas commoda HOM05D005670 ORTHO05D007612 2.2e-43 180.3 324 34.9
Zm00001eb137210 Zea mays HOM05D005670 ORTHO05D007612 3.5e-41 172.9 111 66.7
FvH4_5g20980 Fragaria vesca HOM05D005670 ORTHO05D007612 1.0e-40 171.4 96 83.3
Cre13.g592050 Chlamydomonas reinhardtii HOM05D005670 ORTHO05D007612 1.1e-39 167.9 311 36.3
Zm00001eb374970 Zea mays HOM05D005670 ORTHO05D007612 3.7e-38 162.9 164 51.8
FvH4_5g20981 Fragaria vesca HOM05D005670 ORTHO05D007612 9.0e-37 158.3 94 83.0
Duzib235G0954 Durio zibethinus HOM05D005670 ORTHO05D007612 4.2e-34 149.4 184 45.7
PRCOL_00001419 Prasinoderma coloniale HOM05D005670 ORTHO05D007612 3.3e-31 139.8 332 31.6
Actinidia25619 Actinidia chinensis HOM05D005670 ORTHO05D007612 2.1e-30 137.1 129 55.8
Actinidia39456 Actinidia chinensis HOM05D005670 ORTHO05D007612 2.1e-30 137.1 129 55.8
Cfa026875 Carpinus fangiana HOM05D005670 ORTHO05D007612 2.1e-30 137.1 320 28.8
Os04g0680400 Oryza sativa ssp. japonica HOM05D005670 ORTHO05D007612 2.5e-23 113.6 100 57.0
Eucgr.E03116 Eucalyptus grandis HOM05D005670 ORTHO05D007612 1.7e-19 100.9 77 62.3
Pp3s42_40 Physcomitrium patens HOM05D004829 ORTHO05D034576 2.9e-19 100.1 173 31.2
Rhsim04G0080800 Rhododendron simsii HOM05D000001 ORTHO05D000003 4.6e-17 92.8 81 58.0
Haze_05742 Corylus avellana HOM05D005670 ORTHO05D007612 8.2e-14 82.0 71 56.3
Rhsim06G0021500 Rhododendron simsii HOM05D005670 ORTHO05D007612 2.6e-12 77.0 70 54.3
Eucgr.E03117 Eucalyptus grandis HOM05D005670 ORTHO05D007612 2.2e-11 73.9 73 50.7
Dinv07548 Davidia involucrata HOM05D005670 ORTHO05D007612 6.5e-11 72.4 65 53.8
Pp3s46_240 Physcomitrium patens HOM05D003658 ORTHO05D004457 5.1e-08 62.8 95 32.6
MSTRG.18468 Avicennia marina HOM05D004351 ORTHO05D005196 9.7e-07 58.5 192 24.5


User provided reference genes

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