Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G0134 Fragaria x ananassa HOM05D004667 ORTHO05D005522 2.9e-137 491.9 248 100.0
FvH4_5g15171 Fragaria vesca HOM05D004667 ORTHO05D005522 2.2e-129 465.7 248 96.4
RcHm_v2.0_Chr7g0181001 Rosa chinensis HOM05D004667 ORTHO05D005522 9.7e-117 423.7 252 87.3
MD06G1191600 Malus domestica HOM05D004667 ORTHO05D005522 6.4e-84 314.7 245 69.0
Prupe.5G190100 Prunus persica HOM05D004667 ORTHO05D005522 2.7e-82 309.3 245 66.9
MD14G1198000 Malus domestica HOM05D004667 ORTHO05D005522 7.3e-80 301.2 242 66.5
QL10p016532 Quercus lobata HOM05D004667 ORTHO05D005522 1.2e-69 267.3 235 62.1
Thecc.03G084200 Theobroma cacao HOM05D004667 ORTHO05D005522 9.9e-69 264.2 253 57.7
Duzib084G1199 Durio zibethinus HOM05D004667 ORTHO05D005522 1.7e-65 253.4 253 56.5
Manes.14G077100 Manihot esculenta HOM05D004667 ORTHO05D005522 1.5e-64 250.4 229 61.6
Cfa018960 Carpinus fangiana HOM05D004667 ORTHO05D005522 1.2e-63 247.3 253 56.1
Haze_07341 Corylus avellana HOM05D005938 ORTHO05D007654 1.2e-63 247.3 230 58.7
Ciclev10021941m.g Citrus clementina HOM05D004667 ORTHO05D005522 2.8e-63 246.1 235 57.4
COL.COLO4_24543 Corchorus olitorius HOM05D004667 ORTHO05D005522 4.7e-63 245.4 242 56.6
ClCG06G016270 Citrullus lanatus HOM05D004667 ORTHO05D005522 2.4e-62 243.0 215 60.0
Dinv19946 Davidia involucrata HOM05D004667 ORTHO05D005522 4.4e-61 238.8 243 56.8
Cpa.g.c30141.2 Carica papaya HOM05D004667 ORTHO05D005522 5.8e-61 238.4 236 57.6
Lalb_Chr07g0177971 Lupinus albus HOM05D004667 ORTHO05D005522 5.8e-61 238.4 233 55.8
Duzib205G0185 Durio zibethinus HOM05D004667 ORTHO05D005522 7.6e-61 238.0 229 57.6
MELO3C017166.2 Cucumis melo HOM05D004667 ORTHO05D005522 8.4e-60 234.6 202 61.9
CsaV3_1G002260 Cucumis sativus L. HOM05D004667 ORTHO05D005522 8.4e-60 234.6 233 57.1
Ca_21829_v3 Cicer arietinum L. HOM05D004667 ORTHO05D005522 1.4e-59 233.8 233 56.2
TPR.G34729 Trifolium pratense HOM05D004667 ORTHO05D005522 1.4e-59 233.8 233 54.9
Eucgr.B00470 Eucalyptus grandis HOM05D004667 ORTHO05D005522 1.6e-58 230.3 227 56.4
Lj4g0024645 Lotus japonicus HOM05D004667 ORTHO05D005522 2.1e-58 229.9 233 55.4
Psat4g051040 Pisum sativum HOM05D004667 ORTHO05D005522 2.1e-58 229.9 232 56.5
TWI15G0884 Tripterygium wilfordii HOM05D004667 ORTHO05D005522 2.1e-58 229.9 244 52.9
Gohir.D11G033900 Gossypium hirsutum HOM05D004667 ORTHO05D005522 2.7e-58 229.6 198 61.6
Duzib068G0725 Durio zibethinus HOM05D004667 ORTHO05D005522 7.8e-58 228.0 244 53.3
Gorai.007G036700 Gossypium raimondii HOM05D004667 ORTHO05D005522 6.6e-57 224.9 198 60.6
Medtr4g108360 Medicago truncatula HOM05D004667 ORTHO05D005522 6.6e-57 224.9 232 54.7
arahy.Tifrunner.gnm1.ann1.0RV7R4 Arachis hypogaea HOM05D004667 ORTHO05D005522 1.1e-56 224.2 233 54.9
Gohir.A11G030611 Gossypium hirsutum HOM05D004667 ORTHO05D005522 1.5e-56 223.8 198 61.1
Glyma.05G027600 Glycine max HOM05D004667 ORTHO05D005522 1.9e-56 223.4 230 55.2
Sed0008118 Sechium edule HOM05D004667 ORTHO05D005522 3.3e-56 222.6 204 58.3
Rhsim08G0156600 Rhododendron simsii HOM05D004667 ORTHO05D005522 1.2e-55 220.7 242 55.0
CSS0005857 Camellia sinensis var. sinensis HOM05D004667 ORTHO05D005522 1.6e-55 220.3 224 55.4
CiPaw.11G042700 Carya illinoinensis HOM05D004667 ORTHO05D005522 2.1e-55 219.9 235 52.8
Lalb_Chr13g0303301 Lupinus albus HOM05D004667 ORTHO05D005522 2.1e-55 219.9 228 54.4
TWI60G0935 Tripterygium wilfordii HOM05D004667 ORTHO05D005522 3.6e-55 219.2 232 53.4
Phvul.003G191000 Phaseolus vulgaris HOM05D004667 ORTHO05D005522 6.2e-55 218.4 227 54.6
TAR371G0790 Trochodendron aralioides HOM05D004667 ORTHO05D005522 6.2e-55 218.4 232 52.6
Potri.015G142700 Populus trichocarpa HOM05D004667 ORTHO05D005522 3.1e-54 216.1 217 58.1
Actinidia04904 Actinidia chinensis HOM05D004667 ORTHO05D005522 6.9e-54 214.9 234 53.4
Dinv38692 Davidia involucrata HOM05D004667 ORTHO05D005522 6.9e-54 214.9 240 53.8
Glyma.17G098900 Glycine max HOM05D004667 ORTHO05D005522 2.6e-53 213.0 202 58.4
Lj5C112T10 Lonicera japonica HOM05D004667 ORTHO05D005522 9.9e-53 211.1 238 51.3
CANSAT80G1185 Cannabis sativa HOM05D004667 ORTHO05D005522 1.3e-52 210.7 231 56.3
VMungo1215G1912 Vigna mungo HOM05D004667 ORTHO05D005522 3.8e-52 209.1 228 53.9
PGR083G2477 Punica granatum HOM05D004667 ORTHO05D005522 4.9e-52 208.8 217 55.3
arahy.Tifrunner.gnm1.ann1.U816VA Arachis hypogaea HOM05D004667 ORTHO05D005522 4.2e-51 205.7 233 51.9
Potri.003G074400 Populus trichocarpa HOM05D004667 ORTHO05D005522 7.1e-51 204.9 224 54.9
TAR629G0869 Trochodendron aralioides HOM05D000350 ORTHO05D005522 1.2e-50 204.1 259 47.9
Nn4g23126 Nelumbo nucifera HOM05D004667 ORTHO05D005522 1.0e-49 201.1 236 51.3
Sabra03G0045100 Salix brachista HOM05D004667 ORTHO05D005522 1.0e-49 201.1 224 54.9
Atru.chr9.2269 Acer truncatum HOM05D004667 ORTHO05D005522 1.3e-49 200.7 240 50.0
Nn3g17203 Nelumbo nucifera HOM05D004667 ORTHO05D005522 1.7e-49 200.3 232 48.3
Hma1.2p1_0735F.1_g210470 Hydrangea macrophylla HOM05D004667 ORTHO05D005522 5.1e-49 198.7 196 57.7
GSVIVG01011386001 Vitis vinifera HOM05D004667 ORTHO05D005522 1.9e-48 196.8 227 50.2
Nitab4.5_0000026g0120 Nicotiana tabacum HOM05D004667 ORTHO05D005522 3.4e-45 186.0 229 45.4
vmacro17553 Vaccinium macrocarpon HOM05D004667 ORTHO05D005522 2.2e-44 183.3 212 53.8
Aqoxy3G03350 Aquilegia oxysepala HOM05D004667 ORTHO05D005522 1.9e-43 180.3 220 47.7
Ah.08g216800 Amaranthus hybridus HOM05D004667 ORTHO05D005522 2.4e-43 179.9 224 47.8
AUR62001482 Chenopodium quinoa HOM05D004667 ORTHO05D005522 3.2e-43 179.5 227 47.6
Actinidia17543 Actinidia chinensis HOM05D004667 ORTHO05D005522 5.4e-43 178.7 233 47.2
Sed0021322 Sechium edule HOM05D004667 ORTHO05D005522 5.4e-43 178.7 200 50.5
Hund02659 Selenicereus undatus HOM05D004667 ORTHO05D005522 5.4e-43 178.7 264 43.6
Sc04g0002550 Simmondsia chinensis HOM05D004667 ORTHO05D005522 9.3e-43 177.9 203 50.2
Hma1.2p1_0449F.1_g155390 Hydrangea macrophylla HOM05D004667 ORTHO05D005522 1.6e-42 177.2 241 45.6
Nitab4.5_0000741g0010 Nicotiana tabacum HOM05D004667 ORTHO05D005522 2.1e-42 176.8 233 44.6
PSO063G1198 Papaver somniferum HOM05D004667 ORTHO05D005522 2.1e-42 176.8 236 47.9
Migut.D01831 Erythranthe guttata HOM05D004667 ORTHO05D005522 2.7e-42 176.4 241 47.3
AUR62009884 Chenopodium quinoa HOM05D004667 ORTHO05D005522 3.5e-42 176.0 225 47.1
MBI02_g23680_MAGBIO Magnolia biondii HOM05D004667 ORTHO05D005522 1.3e-41 174.1 256 42.2
PSO832G1839 Papaver somniferum HOM05D004667 ORTHO05D005522 2.3e-41 173.3 236 47.0
Phvul.009G188251 Phaseolus vulgaris HOM05D004667 ORTHO05D005522 2.3e-41 173.3 236 45.3
Actinidia02716 Actinidia chinensis HOM05D004667 ORTHO05D005522 3.0e-41 172.9 233 45.5
MSTRG.4419 Avicennia marina HOM05D004667 ORTHO05D005522 3.0e-41 172.9 218 48.2
Rhsim08G0068600 Rhododendron simsii HOM05D004667 ORTHO05D005522 6.7e-41 171.8 246 43.9
vmacro18196 Vaccinium macrocarpon HOM05D004667 ORTHO05D005522 6.7e-41 171.8 225 45.3
VMungo1309G0024 Vigna mungo HOM05D004667 ORTHO05D005522 8.7e-41 171.4 230 45.7
GSVIVG01008025001 Vitis vinifera HOM05D004667 ORTHO05D005522 1.5e-40 170.6 179 53.6
Manes.06G094100 Manihot esculenta HOM05D004667 ORTHO05D005522 1.3e-39 167.5 237 46.4
CDE05G0260 Ceratophyllum demersum HOM05D004667 ORTHO05D005522 1.6e-39 167.2 254 40.2
ECA246G3018 Erigeron canadensis HOM05D004667 ORTHO05D005522 2.8e-39 166.4 200 48.0
HanXRQChr05g0158091 Helianthus annuus HOM05D004667 ORTHO05D005522 3.7e-39 166.0 209 46.9
Sabra15G0152700 Salix brachista HOM05D004667 ORTHO05D005522 1.1e-38 164.5 198 54.5
HPP92_006020 Vanilla planifolia HOM05D004366 ORTHO05D005058 1.1e-38 164.5 220 44.5
CDE05G2553 Ceratophyllum demersum HOM05D004667 ORTHO05D005522 1.8e-38 163.7 254 39.8
Peaxi162Scf00712g00029 Petunia axillaris HOM05D004667 ORTHO05D005522 4.0e-38 162.5 200 47.5
Cc07_g03280 Coffea canephora HOM05D004667 ORTHO05D005522 4.5e-37 159.1 217 47.0
BcaB02g10693 Brassica carinata HOM05D004667 ORTHO05D005522 1.3e-36 157.5 251 44.6
MSTRG.3233 Avicennia marina HOM05D004667 ORTHO05D005522 2.9e-36 156.4 234 42.7
EL10Ac7g16410 Beta vulgaris HOM05D004667 ORTHO05D005522 3.8e-36 156.0 226 42.9
Thhalv10010670m.g Eutrema salsugineum HOM05D004667 ORTHO05D005522 8.4e-36 154.8 255 43.5
Sp5g14280 Schrenkiella parvula HOM05D004667 ORTHO05D005522 1.1e-35 154.5 255 42.4
Actinidia37637 Actinidia chinensis HOM05D004667 ORTHO05D005522 1.4e-35 154.1 181 51.4
Aa31LG4G16380 Aethionema arabicum HOM05D004667 ORTHO05D005522 1.9e-35 153.7 235 42.6
BraA01t02497Z Brassica rapa HOM05D004667 ORTHO05D005522 1.9e-35 153.7 247 43.3
DCAR_011136 Daucus carota HOM05D004667 ORTHO05D005522 1.9e-35 153.7 244 38.9
AL5G26930 Arabidopsis lyrata HOM05D004667 ORTHO05D005522 5.5e-35 152.1 257 42.4
CARHR156320 Cardamine hirsuta HOM05D004667 ORTHO05D005522 5.5e-35 152.1 253 42.7
PGSC0003DMG400000599 Solanum tuberosum HOM05D004667 ORTHO05D005522 9.3e-35 151.4 234 42.7
A01p25820 Brassica napus HOM05D004667 ORTHO05D005522 2.1e-34 150.2 247 42.9
BcaB05g23064 Brassica carinata HOM05D004667 ORTHO05D005522 2.7e-34 149.8 216 44.9
BraA06t25665Z Brassica rapa HOM05D004667 ORTHO05D005522 6.0e-34 148.7 248 39.9
Oeu022621.1 Olea europaea HOM05D004667 ORTHO05D005522 7.9e-34 148.3 192 47.9
A06p27240 Brassica napus HOM05D004667 ORTHO05D005522 1.0e-33 147.9 248 39.9
Carub.0005s1377 Capsella rubella HOM05D004667 ORTHO05D005522 1.8e-33 147.1 256 41.4
BcaC01g02286 Brassica carinata HOM05D004667 ORTHO05D005522 3.9e-33 146.0 248 39.9
BolC1t03209H Brassica oleracea HOM05D004667 ORTHO05D005522 6.7e-33 145.2 246 41.9
Sopen03g035270 Solanum pennellii HOM05D004667 ORTHO05D005522 8.7e-33 144.8 233 40.8
CAN.G407.116 Capsicum annuum HOM05D004667 ORTHO05D005522 1.1e-32 144.4 234 41.5
Solyc03g116340.3 Solanum lycopersicum HOM05D004667 ORTHO05D005522 2.5e-32 143.3 233 40.3
AT3G47640 Arabidopsis thaliana HOM05D004667 ORTHO05D005522 5.6e-32 142.1 256 41.4
MSTRG.23944 Avicennia marina HOM05D004667 ORTHO05D005522 5.6e-32 142.1 227 41.0
C03p67020 Brassica napus HOM05D004667 ORTHO05D005522 5.6e-32 142.1 248 39.5
BolC3t18977H Brassica oleracea HOM05D004667 ORTHO05D005522 7.4e-32 141.7 248 39.5
ECA232G3869 Erigeron canadensis HOM05D004667 ORTHO05D005522 2.1e-31 140.2 199 42.2
THA.LOC104818253 Tarenaya hassleriana HOM05D004667 ORTHO05D005522 2.1e-31 140.2 244 39.3
Migut.H00911 Erythranthe guttata HOM05D004667 ORTHO05D005522 2.8e-31 139.8 209 44.5
Lsat_1_v5_gn_5_19381 Lactuca sativa HOM05D000189 ORTHO05D000474 2.8e-31 139.8 185 47.0
SalBow1G0094 Salvia bowleyana HOM05D004667 ORTHO05D005522 4.8e-31 139.0 206 44.2
ATR0564G258 Amborella trichopoda HOM05D004667 ORTHO05D005522 8.2e-31 138.3 232 39.2
Lsat_1_v5_gn_4_178121 Lactuca sativa HOM05D004667 ORTHO05D005522 1.1e-30 137.9 215 39.1
SGA_v2.0_scaffold59G20685 Striga asiatica HOM05D004667 ORTHO05D005522 3.4e-29 132.9 233 39.1
Peaxi162Scf00274g00834 Petunia axillaris HOM05D004667 ORTHO05D005522 4.5e-29 132.5 232 40.5
Oeu016168.2 Olea europaea HOM05D004667 ORTHO05D005522 5.8e-29 132.1 248 36.7
Cc04_g16930 Coffea canephora HOM05D004667 ORTHO05D005522 1.7e-28 130.6 215 39.1
Nitab4.5_0002257g0120 Nicotiana tabacum HOM05D004667 ORTHO05D005522 6.5e-28 128.6 206 40.3
Nitab4.5_0014986g0010 Nicotiana tabacum HOM05D004667 ORTHO05D005522 2.5e-27 126.7 231 37.7
Os07g0628500 Oryza sativa ssp. japonica HOM05D004667 ORTHO05D005522 4.2e-27 125.9 240 37.5
HanXRQChr09g0265291 Helianthus annuus HOM05D004667 ORTHO05D005522 7.1e-27 125.2 201 40.8
Zm00001eb018460 Zea mays HOM05D004667 ORTHO05D005522 1.9e-24 117.1 242 35.5
C01p32730 Brassica napus HOM05D004667 ORTHO05D005522 9.7e-24 114.8 175 44.0
DCAR_021526 Daucus carota HOM05D004667 ORTHO05D005522 2.6e-21 106.7 202 36.1
CDE09G1261 Ceratophyllum demersum HOM05D004667 ORTHO05D005522 7.7e-21 105.1 196 34.7
BcaC01g00891 Brassica carinata HOM05D004667 ORTHO05D005522 1.0e-20 104.8 84 61.9
vmacro18198 Vaccinium macrocarpon HOM05D004667 ORTHO05D005522 1.3e-20 104.4 252 32.1
BolC3t18707H Brassica oleracea HOM05D004667 ORTHO05D005522 1.7e-20 104.0 84 63.1
BcaC09g49811 Brassica carinata HOM05D004667 ORTHO05D005522 1.1e-19 101.3 173 40.5
Os11g0601700 Oryza sativa ssp. japonica HOM05D004667 ORTHO05D005522 1.9e-19 100.5 117 49.6
Lsat_1_v5_gn_4_108900 Lactuca sativa HOM05D000650 ORTHO05D000735 7.9e-18 95.1 102 52.9
Oeu021379.1 Olea europaea HOM05D004667 ORTHO05D005522 3.0e-17 93.2 180 37.2
Zm00001eb328250 Zea mays HOM05D004667 ORTHO05D005522 6.7e-17 92.0 220 32.7
Os03g0379300 Oryza sativa ssp. japonica HOM05D004667 ORTHO05D005522 2.5e-16 90.1 214 31.8
CDE02G4410 Ceratophyllum demersum HOM05D001668 ORTHO05D005522 6.9e-14 82.0 142 38.7
Gorai.005G252200 Gossypium raimondii HOM05D003097 ORTHO05D003437 9.1e-14 81.6 243 30.9
BraA03t15338Z Brassica rapa HOM05D004667 ORTHO05D005522 5.9e-13 79.0 71 56.3
C08p25720 Brassica napus HOM05D004667 ORTHO05D005522 4.2e-11 72.8 84 51.2
BolC8t50187H Brassica oleracea HOM05D004667 ORTHO05D005522 4.2e-11 72.8 84 51.2
MSTRG.27673 Avicennia marina HOM05D003097 ORTHO05D003437 7.2e-11 72.0 152 32.9
A06p19950 Brassica napus HOM05D003537 ORTHO05D004180 7.2e-11 72.0 158 37.3
BraA06t25078Z Brassica rapa HOM05D003537 ORTHO05D004180 7.2e-11 72.0 158 37.3
BcaC01g02459 Brassica carinata HOM05D004667 ORTHO05D005522 3.6e-10 69.7 51 64.7
Aa31LG8G6630 Aethionema arabicum HOM05D003097 ORTHO05D003437 4.7e-10 69.3 114 36.8
ClCG02G011390 Citrullus lanatus HOM05D003097 ORTHO05D003437 1.0e-09 68.2 150 31.3
CSS0015165 Camellia sinensis var. sinensis HOM05D003097 ORTHO05D003437 1.8e-09 67.4 191 30.4
Pp3c11_20170 Physcomitrium patens HOM05D003097 ORTHO05D005522 2.3e-09 67.0 93 39.8
Duzib248G0851 Durio zibethinus HOM05D003097 ORTHO05D003437 2.6e-08 63.5 191 28.8
SalBow2G2117 Salvia bowleyana HOM05D001139 ORTHO05D000936 2.2e-07 60.5 150 34.0
SalBow3G2213 Salvia bowleyana HOM05D001139 ORTHO05D000936 2.2e-07 60.5 95 41.1
SGA_v2.0_scaffold80G25871 Striga asiatica HOM05D003097 ORTHO05D003437 2.2e-07 60.5 161 30.4
BraA01t00253Z Brassica rapa HOM05D003097 ORTHO05D003437 2.8e-07 60.1 68 45.6
SGA_v2.0_scaffold308G48089 Striga asiatica HOM05D001139 ORTHO05D000936 6.3e-07 58.9 114 35.1
Duzib151G0978 Durio zibethinus HOM05D001139 ORTHO05D000936 8.2e-07 58.5 114 36.0
SHI31874 Sapria himalayana HOM05D001139 ORTHO05D000936 1.1e-06 58.2 185 30.3
Dinv33630 Davidia involucrata HOM05D003097 ORTHO05D003437 1.4e-06 57.8 151 28.5
CSS0003058 Camellia sinensis var. sinensis HOM05D001139 ORTHO05D000936 1.8e-06 57.4 122 34.4
Sabra09G0099100 Salix brachista HOM05D003097 ORTHO05D003437 1.8e-06 57.4 151 27.2
TAR628G1174 Trochodendron aralioides HOM05D003097 ORTHO05D003437 2.4e-06 57.0 151 27.8
MD16G1216000 Malus domestica HOM05D001139 ORTHO05D000936 4.1e-06 56.2 94 38.3
Potri.009G129600 Populus trichocarpa HOM05D003097 ORTHO05D003437 4.1e-06 56.2 183 25.1
ATR1134G035 Amborella trichopoda HOM05D003097 ORTHO05D003437 5.3e-06 55.8 225 25.3
BcaNung00768 Brassica carinata HOM05D003097 ORTHO05D003437 5.3e-06 55.8 206 30.1
C02p18750 Brassica napus HOM05D003097 ORTHO05D003437 7.0e-06 55.5 68 45.6
Gohir.A11G175100 Gossypium hirsutum HOM05D003097 ORTHO05D003437 7.0e-06 55.5 160 28.8


User provided reference genes

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