Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G2930 Fragaria x ananassa HOM05D006178 ORTHO05D007504 3.2e-181 638.3 314 100.0
FvH4_4g33550 Fragaria vesca HOM05D006178 ORTHO05D007504 6.2e-177 624.0 314 97.8
FAN17G1905 Fragaria x ananassa HOM05D006178 ORTHO05D007504 6.9e-176 620.5 325 95.1
FAN12G1191 Fragaria x ananassa HOM05D006178 ORTHO05D007504 2.9e-174 615.1 326 94.2
FAN22G2090 Fragaria x ananassa HOM05D006178 ORTHO05D007504 6.4e-174 614.0 326 93.9
MD13G1020300 Malus domestica HOM05D006178 ORTHO05D007504 1.6e-148 529.6 314 82.5
Prupe.1G333400 Prunus persica HOM05D006178 ORTHO05D007504 1.5e-146 523.1 321 80.7
CiPaw.05G188700 Carya illinoinensis HOM05D006178 ORTHO05D007504 2.5e-138 495.7 309 77.7
GSVIVG01011660001 Vitis vinifera HOM05D006178 ORTHO05D007504 2.7e-132 475.7 312 72.4
Lj2g0017740 Lotus japonicus HOM05D006178 ORTHO05D007504 4.7e-132 474.9 305 74.1
QL03p035908 Quercus lobata HOM05D006178 ORTHO05D007504 1.4e-131 473.4 339 71.1
Hma1.2p1_0277F.1_g111690 Hydrangea macrophylla HOM05D006178 ORTHO05D007504 1.1e-130 470.3 314 71.7
Psat6g046400 Pisum sativum HOM05D006178 ORTHO05D007504 4.4e-130 468.4 303 73.9
Medtr1g032430 Medicago truncatula HOM05D006178 ORTHO05D007504 7.4e-130 467.6 305 72.8
Glyma.02G085100 Glycine max HOM05D006178 ORTHO05D007504 1.5e-127 459.9 307 73.0
Actinidia38440 Actinidia chinensis HOM05D006178 ORTHO05D007504 2.6e-127 459.1 312 72.4
CsaV3_5G015780 Cucumis sativus L. HOM05D006178 ORTHO05D007504 4.5e-127 458.4 314 69.1
Atru.chr11.922 Acer truncatum HOM05D006178 ORTHO05D007504 5.9e-127 458.0 310 71.9
Thecc.02G292800 Theobroma cacao HOM05D006178 ORTHO05D007504 2.9e-126 455.7 313 71.9
TWI74G1561 Tripterygium wilfordii HOM05D006178 ORTHO05D007504 2.9e-126 455.7 303 71.0
Duzib251G0568 Durio zibethinus HOM05D006178 ORTHO05D007504 1.9e-125 453.0 314 71.0
Ca_12542_v3 Cicer arietinum L. HOM05D006178 ORTHO05D007504 9.4e-125 450.7 299 72.6
TPR.G36937 Trifolium pratense HOM05D006178 ORTHO05D007504 4.7e-124 448.4 307 70.4
Ciclev10015964m.g Citrus clementina HOM05D006178 ORTHO05D007504 5.2e-123 444.9 315 69.8
Gohir.D01G139900 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.5e-122 443.4 312 69.6
Gorai.002G172000 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.5e-122 443.4 312 69.6
Gohir.A01G146700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 3.3e-122 442.2 312 69.2
ClCG09G011820 Citrullus lanatus HOM05D006178 ORTHO05D007504 7.5e-122 441.0 302 69.9
MELO3C016656.2 Cucumis melo HOM05D006178 ORTHO05D007504 9.7e-122 440.7 328 66.2
Potri.010G106400 Populus trichocarpa HOM05D006178 ORTHO05D007504 9.7e-122 440.7 313 69.6
arahy.Tifrunner.gnm1.ann1.56CUD8 Arachis hypogaea HOM05D006178 ORTHO05D007504 1.3e-121 440.3 304 69.4
Cpa.g.sc2.193 Carica papaya HOM05D006178 ORTHO05D007504 1.4e-120 436.8 313 69.0
arahy.Tifrunner.gnm1.ann1.M99K8C Arachis hypogaea HOM05D006178 ORTHO05D007504 7.0e-120 434.5 304 68.4
Cc11_g07280 Coffea canephora HOM05D006178 ORTHO05D007504 1.2e-119 433.7 312 66.3
Lalb_Chr17g0338441 Lupinus albus HOM05D006178 ORTHO05D007504 1.2e-119 433.7 291 71.8
COL.COLO4_16591 Corchorus olitorius HOM05D006178 ORTHO05D007504 1.3e-118 430.3 296 70.9
Thhalv10007963m.g Eutrema salsugineum HOM05D006178 ORTHO05D007504 2.2e-118 429.5 326 65.6
HanXRQChr15g0476731 Helianthus annuus HOM05D006178 ORTHO05D007504 1.5e-117 426.8 306 67.6
THA.LOC104821906 Tarenaya hassleriana HOM05D006178 ORTHO05D007504 3.2e-117 425.6 310 67.4
Manes.15G134200 Manihot esculenta HOM05D006178 ORTHO05D007504 4.2e-117 425.2 317 67.2
Phvul.003G019200 Phaseolus vulgaris HOM05D006178 ORTHO05D007504 1.0e-115 420.6 302 68.2
Sc04g0008610 Simmondsia chinensis HOM05D006178 ORTHO05D007504 1.0e-115 420.6 306 68.0
CAN.G511.14 Capsicum annuum HOM05D006178 ORTHO05D007504 1.8e-115 419.9 313 63.6
ECA246G2474 Erigeron canadensis HOM05D006178 ORTHO05D007504 4.0e-115 418.7 312 66.0
Eucgr.B02675 Eucalyptus grandis HOM05D006178 ORTHO05D007504 8.8e-115 417.5 307 67.4
Ah.02g128010 Amaranthus hybridus HOM05D006178 ORTHO05D007504 1.5e-114 416.8 310 65.2
EL10Ac2g02672 Beta vulgaris HOM05D006178 ORTHO05D007504 1.5e-114 416.8 304 65.8
Solyc07g008850.3 Solanum lycopersicum HOM05D006178 ORTHO05D007504 7.5e-114 414.5 315 63.2
PGSC0003DMG400028747 Solanum tuberosum HOM05D006178 ORTHO05D007504 9.8e-114 414.1 300 64.0
Migut.E00482 Erythranthe guttata HOM05D006178 ORTHO05D007504 1.3e-113 413.7 308 66.9
AT1G24793 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 1.7e-113 413.3 299 68.2
AT1G25054 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 1.7e-113 413.3 299 68.2
AT1G25145 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 1.7e-113 413.3 299 68.2
AT1G25210 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 1.7e-113 413.3 299 68.2
Oeu044010.1 Olea europaea HOM05D006178 ORTHO05D007504 1.7e-113 413.3 291 69.4
SalBow2G2905 Salvia bowleyana HOM05D006178 ORTHO05D007504 4.8e-113 411.8 310 64.5
Carub.0001s2539 Capsella rubella HOM05D006178 ORTHO05D007504 6.3e-113 411.4 327 64.2
Sp1g23080 Schrenkiella parvula HOM05D006178 ORTHO05D007504 6.3e-113 411.4 307 66.8
Sopen07g004780 Solanum pennellii HOM05D006178 ORTHO05D007504 1.8e-112 409.8 319 62.4
Lsat_1_v5_gn_3_53481 Lactuca sativa HOM05D006178 ORTHO05D007504 2.4e-112 409.5 299 68.9
AL1G40190 Arabidopsis lyrata HOM05D006178 ORTHO05D007504 4.1e-112 408.7 324 63.9
DCAR_007330 Daucus carota HOM05D006178 ORTHO05D007504 5.4e-112 408.3 297 67.7
Lj6C738G3 Lonicera japonica HOM05D001486 ORTHO05D007504 2.9e-110 402.5 317 62.1
A08p26780 Brassica napus HOM05D006178 ORTHO05D007504 3.8e-110 402.1 306 66.3
PSO017G4246 Papaver somniferum HOM05D006178 ORTHO05D007504 5.5e-109 398.3 311 62.4
BcaB03g12042 Brassica carinata HOM05D006178 ORTHO05D007504 3.6e-108 395.6 295 66.4
AUR62014248 Chenopodium quinoa HOM05D006178 ORTHO05D007504 6.1e-108 394.8 290 65.5
PSO478G4000 Papaver somniferum HOM05D006178 ORTHO05D007504 1.0e-107 394.0 311 62.1
AUR62038473 Chenopodium quinoa HOM05D006178 ORTHO05D007504 1.4e-107 393.7 290 65.2
Haze_10879 Corylus avellana HOM05D006178 ORTHO05D007504 1.4e-107 393.7 247 77.7
BcaC01g01670 Brassica carinata HOM05D006178 ORTHO05D007504 1.8e-107 393.3 303 66.7
BraA08t34624Z Brassica rapa HOM05D006178 ORTHO05D007504 1.8e-107 393.3 306 65.0
RcHm_v2.0_Chr7g0235121 Rosa chinensis HOM05D006178 ORTHO05D007504 1.2e-106 390.6 213 87.8
Hund24927 Selenicereus undatus HOM05D006178 ORTHO05D007504 2.6e-106 389.4 394 53.0
C03p73180 Brassica napus HOM05D006178 ORTHO05D007504 4.4e-106 388.7 305 66.2
BolC3t19616H Brassica oleracea HOM05D006178 ORTHO05D007504 4.4e-106 388.7 305 66.2
Aa31LG7G9330 Aethionema arabicum HOM05D006178 ORTHO05D007504 1.2e-103 380.6 325 61.2
Peaxi162Scf00937g00336 Petunia axillaris HOM05D006178 ORTHO05D007504 1.0e-102 377.5 297 61.6
MBI13_g29562_MAGBIO Magnolia biondii HOM05D006178 ORTHO05D007504 3.8e-102 375.6 300 63.3
Dinv07729 Davidia involucrata HOM05D006178 ORTHO05D007504 1.1e-101 374.0 247 71.7
Aqoxy3G00007 Aquilegia oxysepala HOM05D006178 ORTHO05D007504 6.6e-94 348.2 318 57.5
vmacro00552 Vaccinium macrocarpon HOM05D006178 ORTHO05D007504 1.1e-93 347.4 319 59.6
CANSAT01G0234 Cannabis sativa HOM05D006178 ORTHO05D007504 1.9e-88 330.1 249 67.1
Os03g0223900 Oryza sativa ssp. japonica HOM05D006178 ORTHO05D007504 1.2e-87 327.4 307 54.7
ATR0753G153 Amborella trichopoda HOM05D006178 ORTHO05D007504 1.7e-86 323.6 294 56.1
Sed0021590 Sechium edule HOM05D006178 ORTHO05D007504 2.5e-85 319.7 227 66.5
Zm00001eb009130 Zea mays HOM05D006178 ORTHO05D007504 1.2e-84 317.4 301 54.8
SGA_v2.0_scaffold23G10206 Striga asiatica HOM05D006178 ORTHO05D007504 3.6e-84 315.8 278 59.0
Sabra10G0077800 Salix brachista HOM05D006178 ORTHO05D007504 8.1e-84 314.7 262 61.8
Pp3c3_1850 Physcomitrium patens HOM05D006178 ORTHO05D007504 4.7e-76 288.9 296 51.0
unitig_22.g5599 Utricularia gibba HOM05D000369 ORTHO05D000253 1.4e-75 287.3 311 53.7
Mapoly0012s0127 Marchantia polymorpha HOM05D006178 ORTHO05D007504 6.8e-75 285.0 290 50.7
Nitab4.5_0000018g0160 Nicotiana tabacum HOM05D006178 ORTHO05D007504 5.8e-74 282.0 216 63.0
HPP92_013128 Vanilla planifolia HOM05D006178 ORTHO05D007504 5.8e-74 282.0 266 55.3
CSS0005024 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 2.8e-68 263.1 193 69.9
Nitab4.5_0009975g0010 Nicotiana tabacum HOM05D006178 ORTHO05D007504 3.6e-68 262.7 240 55.4
CSS0001732 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 1.4e-67 260.8 192 69.8
Gohir.D08G117400 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.4e-67 260.8 193 66.3
Gorai.001G151600 Gossypium raimondii HOM05D006178 ORTHO05D007504 8.9e-67 258.1 190 66.3
Gohir.D07G139600 Gossypium hirsutum HOM05D006178 ORTHO05D007504 3.4e-66 256.1 190 66.3
Gohir.D13G135551 Gossypium hirsutum HOM05D006178 ORTHO05D007504 5.8e-66 255.4 193 64.2
Gohir.D10G193800 Gossypium hirsutum HOM05D006178 ORTHO05D007504 7.6e-66 255.0 190 66.3
Gorai.010G050600 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.3e-65 254.2 190 65.3
SMO232G0119 Selaginella moellendorffii HOM05D006178 ORTHO05D007504 9.3e-64 248.1 285 47.4
HPP92_013158 Vanilla planifolia HOM05D006178 ORTHO05D007504 7.8e-63 245.0 210 56.2
CDE05G0668 Ceratophyllum demersum HOM05D006178 ORTHO05D007504 1.4e-59 234.2 229 52.8
CBR_g12524 Chara braunii HOM05D006178 ORTHO05D007504 3.4e-58 229.6 244 49.6
Gohir.D11G251901 Gossypium hirsutum HOM05D006178 ORTHO05D007504 7.6e-58 228.4 190 61.1
TAR629G3300 Trochodendron aralioides HOM05D006178 ORTHO05D007504 8.4e-57 224.9 194 58.8
Gorai.005G149500 Gossypium raimondii HOM05D006178 ORTHO05D007504 7.4e-53 211.8 193 57.0
Gorai.005G145500 Gossypium raimondii HOM05D006178 ORTHO05D007504 9.6e-53 211.5 206 54.9
CSS0007559 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 2.4e-43 180.3 104 79.8
TAR629G1361 Trochodendron aralioides HOM05D006178 ORTHO05D007504 2.4e-43 180.3 105 78.1
CSS0004101 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 5.3e-43 179.1 104 78.8
PRCOL_00001866 Prasinoderma coloniale HOM05D006178 ORTHO05D007504 2.0e-42 177.2 305 37.0
MCO09G291 Micromonas commoda HOM05D006178 ORTHO05D007504 5.8e-42 175.6 291 39.2
Gorai.007G245600 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.7e-41 174.1 123 68.3
Gohir.D11G228700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 3.8e-41 172.9 121 69.4
QL03p035827 Quercus lobata HOM05D006178 ORTHO05D007504 2.5e-37 160.2 102 75.5
SEGI_10880 Sequoiadendron giganteum HOM05D006178 ORTHO05D007504 5.7e-37 159.1 189 45.5
Gorai.009G391300 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.3e-36 157.9 108 72.2
CARHR026360 Cardamine hirsuta HOM05D006178 ORTHO05D007504 1.7e-33 147.5 133 60.9
AagrBONN_evm.TU.Sc2ySwM_340.423 Anthoceros agrestis HOM05D006178 ORTHO05D007504 2.2e-33 147.1 209 42.6
Cre16.g653350 Chlamydomonas reinhardtii HOM05D006178 ORTHO05D007504 5.5e-32 142.5 274 34.7
Nn3g18364 Nelumbo nucifera HOM05D006178 ORTHO05D007504 1.4e-27 127.9 116 54.3
Ca_29306_v3 Cicer arietinum L. HOM05D001616 ORTHO05D007504 2.9e-25 120.2 289 31.5
Nn3g18365 Nelumbo nucifera HOM05D006178 ORTHO05D007504 1.9e-24 117.5 62 82.3
Glyma.13G258800 Glycine max HOM05D006178 ORTHO05D007504 3.0e-22 110.2 90 62.2
Glyma.13G368200 Glycine max HOM05D006178 ORTHO05D007504 3.0e-22 110.2 90 62.2
Sed0025662 Sechium edule HOM05D006178 ORTHO05D007504 4.7e-15 86.3 45 82.2
Gohir.D08G060150 Gossypium hirsutum HOM05D006178 ORTHO05D007504 8.0e-07 58.9 39 71.8
QL02p029395 Quercus lobata HOM05D002431 ORTHO05D002543 1.4e-06 58.2 38 68.4


User provided reference genes

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