Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G2749 Fragaria x ananassa HOM05D000276 ORTHO05D035664 2.3e-28 128.3 67 100.0
FAN04G2342 Fragaria x ananassa HOM05D000276 ORTHO05D035664 1.3e-18 95.9 68 77.9
FAN21G0742 Fragaria x ananassa HOM05D000021 ORTHO05D000010 1.6e-13 79.0 45 86.7
FvH4_5g25161 Fragaria vesca HOM05D000276 ORTHO05D035664 4.3e-11 70.9 50 76.0
Nn5g30758 Nelumbo nucifera HOM05D000276 ORTHO05D003669 1.8e-09 65.5 50 74.0
Atru.chr5.3304 Acer truncatum HOM05D000276 ORTHO05D003669 3.1e-09 64.7 50 72.0
Aqoxy3G00766 Aquilegia oxysepala HOM05D000276 ORTHO05D003669 5.3e-09 63.9 49 73.5
Medtr2g016050 Medicago truncatula HOM05D000276 ORTHO05D003669 5.3e-09 63.9 48 75.0
Atru.chr3.841 Acer truncatum HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
Actinidia02852 Actinidia chinensis HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
Aqoxy6G02191 Aquilegia oxysepala HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
arahy.Tifrunner.gnm1.ann1.D8AUH9 Arachis hypogaea HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
arahy.Tifrunner.gnm1.ann1.QX3B7H Arachis hypogaea HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
CSS0004688 Camellia sinensis var. sinensis HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
CSS0008790 Camellia sinensis var. sinensis HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
CSS0050163 Camellia sinensis var. sinensis HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
CANSAT25G3590 Cannabis sativa HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
Cpa.g.sc37.150 Carica papaya HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
CiPaw.07G060600 Carya illinoinensis HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
CiPaw.08G129900 Carya illinoinensis HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
CDE02G4234 Ceratophyllum demersum HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
CDE04G3614 Ceratophyllum demersum HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
COL.COLO4_17318 Corchorus olitorius HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
COL.COLO4_22453 Corchorus olitorius HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
Dinv33649 Davidia involucrata HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
Duzib132G0276 Durio zibethinus HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
Duzib147G0544 Durio zibethinus HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
Duzib264G0335 Durio zibethinus HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
Eucgr.I02334 Eucalyptus grandis HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
FvH4_1g11520 Fragaria vesca HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
FAN19G1428 Fragaria x ananassa HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
FAN23G3003 Fragaria x ananassa HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
FAN26G3449 Fragaria x ananassa HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
Glyma.02G046400 Glycine max HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
Glyma.16G126200 Glycine max HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
Gohir.A11G174100 Gossypium hirsutum HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
Gohir.D11G181200 Gossypium hirsutum HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
Gorai.007G193100 Gossypium raimondii HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
Lj2g0001498 Lotus japonicus HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
Lj4g0019541 Lotus japonicus HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
Lalb_Chr05g0229771 Lupinus albus HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
Lalb_Chr16g0391361 Lupinus albus HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
MBI09_g13308_MAGBIO Magnolia biondii HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
MD15G1243400 Malus domestica HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
Manes.04G074800 Manihot esculenta HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
Medtr8g075320 Medicago truncatula HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
Nn6g32009 Nelumbo nucifera HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
PSO170G0788 Papaver somniferum HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
PSO210G1597 Papaver somniferum HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
PSO541G5976 Papaver somniferum HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
PSO675G0433 Papaver somniferum HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
Phvul.003G264700 Phaseolus vulgaris HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
Psat4g101320 Pisum sativum HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
Potri.004G174200 Populus trichocarpa HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
Potri.009G133800 Populus trichocarpa HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
Prupe.7G170800 Prunus persica HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
PGR119G0595 Punica granatum HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
Rhsim08G0032400 Rhododendron simsii HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
Rhsim10G0209800 Rhododendron simsii HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
RcHm_v2.0_Chr2g0099151 Rosa chinensis HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
Sabra09G0103700 Salix brachista HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
Thecc.01G015500 Theobroma cacao HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
Thecc.02G061500 Theobroma cacao HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
TPR.G19484 Trifolium pratense HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
TPR.G25817 Trifolium pratense HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
TWI75G0514 Tripterygium wilfordii HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
TAR376G0640 Trochodendron aralioides HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
TAR381G1163 Trochodendron aralioides HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
vmacro22146 Vaccinium macrocarpon HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
VMungo0251G1739 Vigna mungo HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
GSVIVG01018748001 Vitis vinifera HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
GSVIVG01024037001 Vitis vinifera HOM05D000276 ORTHO05D003669 6.9e-09 63.5 49 73.5
Haze_03738 Corylus avellana HOM05D000276 ORTHO05D003669 9.0e-09 63.2 50 70.0
AagrBONN_evm.TU.Sc2ySwM_369.547 Anthoceros agrestis HOM05D000276 ORTHO05D003669 1.5e-08 62.4 49 71.4
Ca_03624_v3 Cicer arietinum L. HOM05D000276 ORTHO05D003669 1.5e-08 62.4 49 71.4
Manes.11G094900 Manihot esculenta HOM05D000276 ORTHO05D003669 1.5e-08 62.4 49 71.4
Pp3c18_9650 Physcomitrium patens HOM05D000276 ORTHO05D003669 1.5e-08 62.4 49 71.4
Pp3c19_7610 Physcomitrium patens HOM05D000276 ORTHO05D003669 1.5e-08 62.4 49 71.4
Pp3c21_8390 Physcomitrium patens HOM05D000276 ORTHO05D003669 1.5e-08 62.4 49 71.4
QL06p051000 Quercus lobata HOM05D000276 ORTHO05D003669 1.5e-08 62.4 49 71.4
Aa31LG1G14640 Aethionema arabicum HOM05D000276 ORTHO05D003669 2.0e-08 62.0 49 71.4
ATR0752G002 Amborella trichopoda HOM05D000276 ORTHO05D003669 2.0e-08 62.0 49 71.4
AL5G31670 Arabidopsis lyrata HOM05D000276 ORTHO05D003669 2.0e-08 62.0 49 71.4
AT3G51260 Arabidopsis thaliana HOM05D000276 ORTHO05D003669 2.0e-08 62.0 49 71.4
AT5G66140 Arabidopsis thaliana HOM05D000276 ORTHO05D003669 2.0e-08 62.0 49 71.4
BcaB04g20122 Brassica carinata HOM05D000276 ORTHO05D003669 2.0e-08 62.0 49 71.4
Carub.0005s1763 Capsella rubella HOM05D000276 ORTHO05D003669 2.0e-08 62.0 49 71.4
CARHR160840 Cardamine hirsuta HOM05D000276 ORTHO05D003669 2.0e-08 62.0 49 71.4
CARHR281600 Cardamine hirsuta HOM05D000276 ORTHO05D003669 2.0e-08 62.0 49 71.4
Cfa006993 Carpinus fangiana HOM05D000276 ORTHO05D003669 2.0e-08 62.0 49 71.4
Ciclev10026339m.g Citrus clementina HOM05D000276 ORTHO05D003669 2.0e-08 62.0 49 71.4
DCAR_000691 Daucus carota HOM05D000276 ORTHO05D003669 2.0e-08 62.0 49 71.4
DCAR_011600 Daucus carota HOM05D000276 ORTHO05D003669 2.0e-08 62.0 49 71.4
ECA232G0366 Erigeron canadensis HOM05D000276 ORTHO05D003669 2.0e-08 62.0 49 71.4
Thhalv10004818m.g Eutrema salsugineum HOM05D000276 ORTHO05D003669 2.0e-08 62.0 49 71.4
Thhalv10004820m.g Eutrema salsugineum HOM05D000276 ORTHO05D003669 2.0e-08 62.0 49 71.4
HanXRQChr03g0068551 Helianthus annuus HOM05D000276 ORTHO05D003669 2.0e-08 62.0 49 71.4
HanXRQChr09g0256741 Helianthus annuus HOM05D000276 ORTHO05D003669 2.0e-08 62.0 49 71.4
HanXRQChr16g0531541 Helianthus annuus HOM05D000276 ORTHO05D003669 2.0e-08 62.0 49 71.4
Lsat_1_v5_gn_4_145821 Lactuca sativa HOM05D000276 ORTHO05D003669 2.0e-08 62.0 49 71.4
Lj2A479T49 Lonicera japonica HOM05D000276 ORTHO05D003669 2.0e-08 62.0 49 71.4
Lj4A222T50 Lonicera japonica HOM05D000276 ORTHO05D003669 2.0e-08 62.0 49 71.4
Oeu006645.2 Olea europaea HOM05D000276 ORTHO05D003669 2.0e-08 62.0 49 71.4
SalBow3G1852 Salvia bowleyana HOM05D000276 ORTHO05D003669 2.0e-08 62.0 49 71.4
Sp2g30550 Schrenkiella parvula HOM05D000276 ORTHO05D003669 2.0e-08 62.0 49 71.4
Sc03g0003670 Simmondsia chinensis HOM05D000276 ORTHO05D003669 2.0e-08 62.0 49 71.4
SGA_v2.0_scaffold207G41911 Striga asiatica HOM05D000276 ORTHO05D003669 2.0e-08 62.0 49 71.4
SGA_v2.0_scaffold80G25845 Striga asiatica HOM05D000276 ORTHO05D003669 2.0e-08 62.0 49 71.4
THA.LOC104819170 Tarenaya hassleriana HOM05D000276 ORTHO05D003669 2.0e-08 62.0 49 71.4
THA.LOC104826565 Tarenaya hassleriana HOM05D000276 ORTHO05D003669 2.0e-08 62.0 49 71.4
unitig_578.g16749 Utricularia gibba HOM05D000276 ORTHO05D003669 2.0e-08 62.0 49 71.4
Ah.03g149040 Amaranthus hybridus HOM05D000276 ORTHO05D003669 2.6e-08 61.6 49 71.4
EL10Ac6g15494 Beta vulgaris HOM05D000276 ORTHO05D003669 2.6e-08 61.6 49 71.4
Cfa005231 Carpinus fangiana HOM05D000276 ORTHO05D003669 2.6e-08 61.6 49 71.4
AUR62029487 Chenopodium quinoa HOM05D000276 ORTHO05D003669 2.6e-08 61.6 49 71.4
AUR62043834 Chenopodium quinoa HOM05D000276 ORTHO05D003669 2.6e-08 61.6 49 71.4
ClCG10G000610 Citrullus lanatus HOM05D000276 ORTHO05D003669 2.6e-08 61.6 49 71.4
Cc02_g16280 Coffea canephora HOM05D000276 ORTHO05D003669 2.6e-08 61.6 49 71.4
Haze_02153 Corylus avellana HOM05D000276 ORTHO05D003669 2.6e-08 61.6 49 71.4
MELO3C013757.2 Cucumis melo HOM05D000276 ORTHO05D003669 2.6e-08 61.6 49 71.4
CsaV3_3G000690 Cucumis sativus L. HOM05D000276 ORTHO05D003669 2.6e-08 61.6 49 71.4
Dinv14096 Davidia involucrata HOM05D000276 ORTHO05D003669 2.6e-08 61.6 58 62.1
FAN28G1455 Fragaria x ananassa HOM05D000276 ORTHO05D003669 2.6e-08 61.6 49 71.4
Gohir.A02G172000 Gossypium hirsutum HOM05D000276 ORTHO05D003669 2.6e-08 61.6 49 71.4
Gohir.D03G008100 Gossypium hirsutum HOM05D000276 ORTHO05D003669 2.6e-08 61.6 49 71.4
Gorai.003G008300 Gossypium raimondii HOM05D000276 ORTHO05D003669 2.6e-08 61.6 49 71.4
Hma1.2p1_0481F.1_g162170 Hydrangea macrophylla HOM05D000276 ORTHO05D003669 2.6e-08 61.6 49 71.4
MBI15_g10641_MAGBIO Magnolia biondii HOM05D000276 ORTHO05D003669 2.6e-08 61.6 49 71.4
MD02G1128200 Malus domestica HOM05D000276 ORTHO05D003669 2.6e-08 61.6 49 71.4
Nitab4.5_0000247g0040 Nicotiana tabacum HOM05D000276 ORTHO05D003669 2.6e-08 61.6 49 71.4
Nitab4.5_0005396g0020 Nicotiana tabacum HOM05D000276 ORTHO05D003669 2.6e-08 61.6 49 71.4
Nitab4.5_0006138g0010 Nicotiana tabacum HOM05D000276 ORTHO05D003669 2.6e-08 61.6 49 71.4
Nitab4.5_0013387g0030 Nicotiana tabacum HOM05D000276 ORTHO05D003669 2.6e-08 61.6 49 71.4
Os08g0548900 Oryza sativa ssp. japonica HOM05D000276 ORTHO05D003669 2.6e-08 61.6 49 71.4
Os09g0538200 Oryza sativa ssp. japonica HOM05D000276 ORTHO05D003669 2.6e-08 61.6 49 71.4
QL11p050003 Quercus lobata HOM05D000276 ORTHO05D003669 2.6e-08 61.6 49 71.4
Sabra04G0116200 Salix brachista HOM05D000276 ORTHO05D003669 2.6e-08 61.6 49 71.4
TPR.G19488 Trifolium pratense HOM05D000276 ORTHO05D003669 2.6e-08 61.6 49 71.4
TPR.G39008 Trifolium pratense HOM05D000276 ORTHO05D003669 2.6e-08 61.6 49 71.4
TWI09G1023 Tripterygium wilfordii HOM05D000276 ORTHO05D003669 2.6e-08 61.6 49 71.4
TWI73G0579 Tripterygium wilfordii HOM05D000276 ORTHO05D003669 2.6e-08 61.6 49 71.4
Zm00001eb103720 Zea mays HOM05D000276 ORTHO05D003669 2.6e-08 61.6 49 71.4
Zm00001eb202760 Zea mays HOM05D000276 ORTHO05D003669 2.6e-08 61.6 49 71.4
Zm00001eb332040 Zea mays HOM05D000276 ORTHO05D003669 2.6e-08 61.6 49 71.4
Ciclev10029139m.g Citrus clementina HOM05D000276 ORTHO05D003669 3.4e-08 61.2 50 68.0
Mapoly0053s0095 Marchantia polymorpha HOM05D000276 ORTHO05D003669 3.4e-08 61.2 49 69.4
MSTRG.20001 Avicennia marina HOM05D000276 ORTHO05D003669 4.5e-08 60.8 49 69.4
BcaB01g00537 Brassica carinata HOM05D000276 ORTHO05D003669 4.5e-08 60.8 49 69.4
BcaC06g33043 Brassica carinata HOM05D000276 ORTHO05D003669 4.5e-08 60.8 49 69.4
A03p48220 Brassica napus HOM05D000276 ORTHO05D003669 4.5e-08 60.8 49 69.4
A09p44290 Brassica napus HOM05D000276 ORTHO05D003669 4.5e-08 60.8 49 69.4
C07p46250 Brassica napus HOM05D000276 ORTHO05D003669 4.5e-08 60.8 49 69.4
C08p26530 Brassica napus HOM05D000276 ORTHO05D003669 4.5e-08 60.8 49 69.4
BolC7t45141H Brassica oleracea HOM05D000276 ORTHO05D003669 4.5e-08 60.8 49 69.4
BolC8t50267H Brassica oleracea HOM05D000276 ORTHO05D003669 4.5e-08 60.8 49 69.4
BraA03t13930Z Brassica rapa HOM05D000276 ORTHO05D003669 4.5e-08 60.8 49 69.4
BraA09t39891Z Brassica rapa HOM05D000276 ORTHO05D003669 4.5e-08 60.8 49 69.4
CAN.G588.64 Capsicum annuum HOM05D000276 ORTHO05D003669 4.5e-08 60.8 49 69.4
Pp3c22_8870 Physcomitrium patens HOM05D000276 ORTHO05D003669 4.5e-08 60.8 49 69.4
Sp5g10960 Schrenkiella parvula HOM05D000276 ORTHO05D003669 4.5e-08 60.8 49 69.4
Solyc01g111450.3 Solanum lycopersicum HOM05D000276 ORTHO05D003669 4.5e-08 60.8 49 69.4
Sopen01g053510 Solanum pennellii HOM05D000276 ORTHO05D003669 4.5e-08 60.8 49 69.4
PGSC0003DMG400006193 Solanum tuberosum HOM05D000276 ORTHO05D003669 4.5e-08 60.8 49 69.4
AL8G45450 Arabidopsis lyrata HOM05D000276 ORTHO05D003669 5.8e-08 60.5 49 69.4
MELO3C007920.2 Cucumis melo HOM05D000276 ORTHO05D003669 5.8e-08 60.5 49 69.4
CsaV3_6G047290 Cucumis sativus L. HOM05D000276 ORTHO05D003669 5.8e-08 60.5 49 69.4
Sed0024543 Sechium edule HOM05D000276 ORTHO05D003669 5.8e-08 60.5 49 69.4
Sc16g0002340 Simmondsia chinensis HOM05D000276 ORTHO05D003669 5.8e-08 60.5 49 69.4
HPP92_015008 Vanilla planifolia HOM05D000276 ORTHO05D003669 5.8e-08 60.5 49 69.4
MSTRG.5447 Avicennia marina HOM05D000276 ORTHO05D003669 7.6e-08 60.1 49 69.4
Migut.B00090 Erythranthe guttata HOM05D000276 ORTHO05D003669 7.6e-08 60.1 49 69.4
Migut.N01313 Erythranthe guttata HOM05D000276 ORTHO05D003669 7.6e-08 60.1 49 69.4
Gohir.A03G204700 Gossypium hirsutum HOM05D000276 ORTHO05D003669 7.6e-08 60.1 49 69.4
Gohir.D02G226000 Gossypium hirsutum HOM05D000276 ORTHO05D003669 7.6e-08 60.1 49 69.4
Gorai.005G253900 Gossypium raimondii HOM05D000276 ORTHO05D003669 7.6e-08 60.1 49 69.4
Peaxi162Scf00362g00836 Petunia axillaris HOM05D000276 ORTHO05D003669 7.6e-08 60.1 49 69.4
Peaxi162Scf01221g00028 Petunia axillaris HOM05D000276 ORTHO05D003669 7.6e-08 60.1 49 69.4
SMO356G0431 Selaginella moellendorffii HOM05D000276 ORTHO05D003669 7.6e-08 60.1 49 69.4
Hund14057 Selenicereus undatus HOM05D000276 ORTHO05D003669 7.6e-08 60.1 49 69.4
SEGI_24359 Sequoiadendron giganteum HOM05D000276 ORTHO05D003669 1.0e-07 59.7 49 67.3
ClCG01G020410 Citrullus lanatus HOM05D000276 ORTHO05D003669 2.2e-07 58.5 49 67.3
Sed0028012 Sechium edule HOM05D000276 ORTHO05D003669 2.2e-07 58.5 49 67.3
CBR_g55165 Chara braunii HOM05D000276 ORTHO05D003669 4.9e-07 57.4 49 65.3
Cre01.g030850 Chlamydomonas reinhardtii HOM05D000276 ORTHO05D003669 4.9e-07 57.4 49 67.3
MCO01G492 Micromonas commoda HOM05D000276 ORTHO05D003669 8.4e-07 56.6 49 65.3
PRCOL_00005021 Prasinoderma coloniale HOM05D000276 ORTHO05D003669 1.1e-06 56.2 49 65.3


User provided reference genes

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