Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G2604 Fragaria x ananassa HOM05D005952 ORTHO05D007262 4.0e-219 764.6 423 100.0
FAN24G3446 Fragaria x ananassa HOM05D005952 ORTHO05D007262 1.6e-212 742.7 432 96.8
FAN03G3372 Fragaria x ananassa HOM05D005952 ORTHO05D007262 2.7e-199 698.7 415 95.9
FAN07G2304 Fragaria x ananassa HOM05D005952 ORTHO05D007262 8.7e-174 614.0 334 97.0
FAN27G1928 Fragaria x ananassa HOM05D005952 ORTHO05D007262 5.2e-171 604.7 408 87.5
FAN21G1414 Fragaria x ananassa HOM05D005952 ORTHO05D007262 6.4e-169 597.8 409 87.3
RcHm_v2.0_Chr4g0430621 Rosa chinensis HOM05D005952 ORTHO05D007262 1.1e-155 553.9 338 89.3
FvH4_4g23970 Fragaria vesca HOM05D005952 ORTHO05D007262 1.8e-155 553.1 339 90.0
FAN04G0683 Fragaria x ananassa HOM05D005952 ORTHO05D007262 5.1e-150 535.0 304 98.7
Prupe.1G228700 Prunus persica HOM05D005952 ORTHO05D007262 2.1e-143 513.1 332 84.9
MD16G1117500 Malus domestica HOM05D005952 ORTHO05D007262 4.6e-135 485.3 330 81.5
QL03p053757 Quercus lobata HOM05D005952 ORTHO05D007262 7.7e-130 468.0 367 78.7
CiPaw.06G101100 Carya illinoinensis HOM05D005952 ORTHO05D007262 1.6e-127 460.3 338 76.3
Cfa009332 Carpinus fangiana HOM05D005952 ORTHO05D007262 3.6e-127 459.1 324 78.7
Gohir.A03G127000 Gossypium hirsutum HOM05D005952 ORTHO05D007262 1.0e-126 457.6 333 76.9
Gohir.D02G150400 Gossypium hirsutum HOM05D005952 ORTHO05D007262 1.8e-126 456.8 333 77.2
arahy.Tifrunner.gnm1.ann1.19W7I6 Arachis hypogaea HOM05D005952 ORTHO05D007262 3.0e-126 456.1 329 75.1
CANSAT01G2967 Cannabis sativa HOM05D005952 ORTHO05D007262 5.1e-126 455.3 338 75.1
Manes.13G018200 Manihot esculenta HOM05D005952 ORTHO05D007262 6.7e-126 454.9 329 76.6
Gorai.005G168700 Gossypium raimondii HOM05D005952 ORTHO05D007262 1.5e-125 453.8 333 76.6
Thecc.02G212400 Theobroma cacao HOM05D005952 ORTHO05D007262 2.6e-125 453.0 328 76.5
COL.COLO4_20379 Corchorus olitorius HOM05D005952 ORTHO05D007262 5.7e-125 451.8 364 71.2
Duzib251G0036 Durio zibethinus HOM05D005952 ORTHO05D007262 9.7e-125 451.1 324 77.2
Eucgr.B03481 Eucalyptus grandis HOM05D005952 ORTHO05D007262 1.3e-124 450.7 313 77.6
Dinv14825 Davidia involucrata HOM05D005952 ORTHO05D007262 2.2e-124 449.9 345 73.6
PGR102G2583 Punica granatum HOM05D005952 ORTHO05D007262 2.8e-124 449.5 322 77.0
MD13G1116800 Malus domestica HOM05D005952 ORTHO05D007262 8.2e-124 448.0 262 88.9
Nn3g16502 Nelumbo nucifera HOM05D005952 ORTHO05D007262 1.1e-123 447.6 375 69.3
EL10Ac6g13481 Beta vulgaris HOM05D005952 ORTHO05D007262 1.8e-123 446.8 339 73.7
Ciclev10031923m.g Citrus clementina HOM05D005952 ORTHO05D007262 3.1e-123 446.0 327 76.5
AUR62024128 Chenopodium quinoa HOM05D005952 ORTHO05D007262 5.3e-123 445.3 336 73.2
Solyc12g035650.2 Solanum lycopersicum HOM05D005952 ORTHO05D007262 1.2e-122 444.1 387 75.2
Sopen12g015910 Solanum pennellii HOM05D005952 ORTHO05D007262 1.2e-122 444.1 387 75.2
ClCG11G013770 Citrullus lanatus HOM05D005952 ORTHO05D007262 1.5e-122 443.7 336 73.8
Haze_12392 Corylus avellana HOM05D005952 ORTHO05D007262 1.0e-121 441.0 348 72.4
Lj3A1066G68 Lonicera japonica HOM05D005952 ORTHO05D007262 1.3e-121 440.7 328 74.7
TWI75G1563 Tripterygium wilfordii HOM05D005952 ORTHO05D007262 1.3e-121 440.7 328 76.5
Peaxi162Scf00518g00512 Petunia axillaris HOM05D005952 ORTHO05D007262 2.2e-121 439.9 340 74.4
CsaV3_5G030360 Cucumis sativus L. HOM05D005952 ORTHO05D007262 2.9e-121 439.5 336 72.9
CSS0022532 Camellia sinensis var. sinensis HOM05D005952 ORTHO05D007262 5.0e-121 438.7 289 81.7
CSS0029993 Camellia sinensis var. sinensis HOM05D005952 ORTHO05D007262 5.0e-121 438.7 289 81.7
MELO3C011875.2 Cucumis melo HOM05D005952 ORTHO05D007262 5.0e-121 438.7 336 72.9
GSVIVG01010442001 Vitis vinifera HOM05D005952 ORTHO05D007262 5.0e-121 438.7 259 86.5
C03p73530 Brassica napus HOM05D005952 ORTHO05D007262 8.5e-121 438.0 329 72.0
Potri.010G059100 Populus trichocarpa HOM05D005952 ORTHO05D007262 8.5e-121 438.0 334 73.7
TAR622G0739 Trochodendron aralioides HOM05D005952 ORTHO05D007262 1.1e-120 437.6 336 74.1
Nitab4.5_0000492g0130 Nicotiana tabacum HOM05D005952 ORTHO05D007262 2.5e-120 436.4 371 73.6
HanXRQChr08g0207671 Helianthus annuus HOM05D005952 ORTHO05D007262 3.2e-120 436.0 339 71.7
Atru.chr11.2304 Acer truncatum HOM05D005952 ORTHO05D007262 4.2e-120 435.6 331 73.1
Aqoxy5G03416 Aquilegia oxysepala HOM05D005952 ORTHO05D007262 4.2e-120 435.6 289 79.2
Lsat_1_v5_gn_8_149221 Lactuca sativa HOM05D005952 ORTHO05D007262 5.5e-120 435.3 337 72.7
Sabra10G0046500 Salix brachista HOM05D005952 ORTHO05D007262 7.2e-120 434.9 344 72.1
Actinidia20698 Actinidia chinensis HOM05D005952 ORTHO05D007262 9.4e-120 434.5 282 80.1
MBI11_g07451_MAGBIO Magnolia biondii HOM05D005952 ORTHO05D007262 1.6e-119 433.7 264 84.1
MSTRG.7992 Avicennia marina HOM05D005952 ORTHO05D007262 2.1e-119 433.3 331 73.1
CAN.G34.9 Capsicum annuum HOM05D005952 ORTHO05D007262 3.9e-118 429.1 381 70.9
Cc00_g13550 Coffea canephora HOM05D005952 ORTHO05D007262 6.7e-118 428.3 313 74.8
A08p26510 Brassica napus HOM05D005952 ORTHO05D007262 8.8e-118 427.9 332 71.1
FAN04G2616 Fragaria x ananassa HOM05D005952 ORTHO05D007262 8.8e-118 427.9 232 97.8
Sed0028059 Sechium edule HOM05D005952 ORTHO05D007262 8.8e-118 427.9 315 72.7
BraA08t34603Z Brassica rapa HOM05D005952 ORTHO05D007262 1.1e-117 427.6 333 70.9
VMungo1383G3287 Vigna mungo HOM05D005952 ORTHO05D007262 1.1e-117 427.6 382 68.6
Potri.008G176100 Populus trichocarpa HOM05D005952 ORTHO05D007262 1.5e-117 427.2 369 73.7
Hund06080 Selenicereus undatus HOM05D005952 ORTHO05D007262 2.0e-117 426.8 320 73.1
TWI36G0663 Tripterygium wilfordii HOM05D005952 ORTHO05D007262 2.0e-117 426.8 266 85.0
BolC3t19647H Brassica oleracea HOM05D005952 ORTHO05D007262 2.6e-117 426.4 334 70.7
Sc04g0004640 Simmondsia chinensis HOM05D005952 ORTHO05D007262 3.3e-117 426.0 329 72.0
Cpa.g.sc43.12 Carica papaya HOM05D005952 ORTHO05D007262 9.7e-117 424.5 402 68.9
THA.LOC104825515 Tarenaya hassleriana HOM05D005952 ORTHO05D007262 9.7e-117 424.5 329 71.7
BcaC01g01637 Brassica carinata HOM05D005952 ORTHO05D007262 1.3e-116 424.1 334 70.4
Ah.02g130720 Amaranthus hybridus HOM05D005952 ORTHO05D007262 1.7e-116 423.7 328 71.0
Phvul.001G260500 Phaseolus vulgaris HOM05D005952 ORTHO05D007262 1.7e-116 423.7 320 71.9
Lalb_Chr12g0206321 Lupinus albus HOM05D005952 ORTHO05D007262 2.4e-115 419.9 326 71.2
CARHR026780 Cardamine hirsuta HOM05D005952 ORTHO05D007262 3.1e-115 419.5 334 69.8
Oeu036880.1 Olea europaea HOM05D005952 ORTHO05D007262 1.0e-113 414.5 366 66.4
Glyma.18G008100 Glycine max HOM05D005952 ORTHO05D007262 1.7e-113 413.7 290 75.9
BcaB03g12064 Brassica carinata HOM05D005952 ORTHO05D007262 2.2e-113 413.3 334 69.5
FAN23G0106 Fragaria x ananassa HOM05D005952 ORTHO05D007262 6.5e-113 411.8 235 99.6
Sp1g23460 Schrenkiella parvula HOM05D005952 ORTHO05D007262 1.9e-112 410.2 335 67.8
ECA233G5976 Erigeron canadensis HOM05D005952 ORTHO05D007262 2.5e-112 409.8 333 70.3
AT1G24310 Arabidopsis thaliana HOM05D005952 ORTHO05D007262 5.5e-112 408.7 335 67.8
Lj1g0012703 Lotus japonicus HOM05D005952 ORTHO05D007262 5.5e-112 408.7 313 70.6
Glyma.11G249200 Glycine max HOM05D005952 ORTHO05D007262 7.2e-112 408.3 375 63.5
Carub.0001s2576 Capsella rubella HOM05D005952 ORTHO05D007262 2.1e-111 406.8 338 66.9
Nitab4.5_0002026g0100 Nicotiana tabacum HOM05D005952 ORTHO05D007262 2.7e-111 406.4 367 70.0
CDE02G4251 Ceratophyllum demersum HOM05D005952 ORTHO05D007262 6.1e-111 405.2 329 68.7
Migut.K00712 Erythranthe guttata HOM05D005952 ORTHO05D007262 6.1e-111 405.2 331 68.6
Psat5g094800 Pisum sativum HOM05D005952 ORTHO05D007262 6.1e-111 405.2 381 68.5
AL1G40610 Arabidopsis lyrata HOM05D005952 ORTHO05D007262 8.0e-111 404.8 336 67.9
Medtr3g085590 Medicago truncatula HOM05D005952 ORTHO05D007262 8.0e-111 404.8 386 66.1
Aa31LG7G9800 Aethionema arabicum HOM05D005952 ORTHO05D007262 1.7e-108 397.1 332 67.5
Rhsim12G0102200 Rhododendron simsii HOM05D005952 ORTHO05D007262 8.2e-108 394.8 417 58.5
ATR0561G264 Amborella trichopoda HOM05D005952 ORTHO05D007262 4.1e-107 392.5 280 73.2
SGA_v2.0_scaffold9G04762 Striga asiatica HOM05D005952 ORTHO05D007262 4.1e-107 392.5 404 63.9
AUR62005599 Chenopodium quinoa HOM05D005952 ORTHO05D007262 2.0e-106 390.2 302 71.9
Sed0012291 Sechium edule HOM05D005952 ORTHO05D007262 2.9e-105 386.3 323 66.3
DCAR_031192 Daucus carota HOM05D005952 ORTHO05D007262 8.5e-105 384.8 241 80.5
arahy.Tifrunner.gnm1.ann1.2251QZ Arachis hypogaea HOM05D005952 ORTHO05D007262 1.1e-104 384.4 329 66.3
PSO063G3255 Papaver somniferum HOM05D005952 ORTHO05D007262 6.1e-103 378.6 311 68.5
PSO782G2816 Papaver somniferum HOM05D005952 ORTHO05D007262 8.0e-103 378.3 317 68.1
Ca_16474_v3 Cicer arietinum L. HOM05D005952 ORTHO05D007262 5.7e-101 372.1 245 76.7
HPP92_023193 Vanilla planifolia HOM05D005952 ORTHO05D007262 3.0e-94 349.7 329 60.8
Os07g0295400 Oryza sativa ssp. japonica HOM05D005952 ORTHO05D007262 4.4e-93 345.9 264 65.2
Zm00001eb305390 Zea mays HOM05D005952 ORTHO05D007262 9.8e-93 344.7 265 65.7
SEGI_29251 Sequoiadendron giganteum HOM05D005952 ORTHO05D007262 2.0e-90 337.0 268 65.3
Mapoly0010s0010 Marchantia polymorpha HOM05D005952 ORTHO05D007262 6.1e-87 325.5 274 62.8
Pp3c10_15930 Physcomitrium patens HOM05D005952 ORTHO05D007262 4.0e-86 322.8 307 57.7
Pp3c10_15937 Physcomitrium patens HOM05D005952 ORTHO05D007262 4.0e-86 322.8 307 57.7
SHI17953 Sapria himalayana HOM05D005952 ORTHO05D007262 7.5e-85 318.5 293 62.1
CDE06G2258 Ceratophyllum demersum HOM05D005952 ORTHO05D007262 3.7e-84 316.2 328 58.2
SalBow2G2019 Salvia bowleyana HOM05D005952 ORTHO05D007262 3.9e-81 306.2 360 53.9
Thhalv10008300m.g Eutrema salsugineum HOM05D005952 ORTHO05D007262 1.1e-78 298.1 250 65.6
CBR_g21943 Chara braunii HOM05D005952 ORTHO05D007262 1.5e-77 294.3 316 51.6
AagrBONN_evm.TU.Sc2ySwM_362.1552 Anthoceros agrestis HOM05D005952 ORTHO05D007262 1.3e-76 291.2 262 56.5
CBR_g39502 Chara braunii HOM05D005952 ORTHO05D007262 2.1e-74 283.9 328 49.7
Hma1.2p1_0668F.1_g200020 Hydrangea macrophylla HOM05D005952 ORTHO05D007262 4.9e-68 262.7 169 84.6
TWI36G1659 Tripterygium wilfordii HOM05D005952 ORTHO05D007262 4.9e-68 262.7 331 54.1
Actinidia09658 Actinidia chinensis HOM05D005952 ORTHO05D007262 1.2e-63 248.1 251 59.4
AL6G39900 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 8.1e-63 245.4 285 53.0
Pp3c14_14130 Physcomitrium patens HOM05D005952 ORTHO05D007262 2.8e-55 220.3 210 59.5
FAN04G0535 Fragaria x ananassa HOM05D005952 ORTHO05D007262 2.1e-47 194.1 117 91.5
Hma1.2p1_0668F.1_g200040 Hydrangea macrophylla HOM05D005952 ORTHO05D007262 2.1e-42 177.6 99 82.8
SEGI_23869 Sequoiadendron giganteum HOM05D005952 ORTHO05D007262 3.8e-28 130.2 96 64.6
HanXRQChr03g0071651 Helianthus annuus HOM05D005952 ORTHO05D007262 1.4e-27 128.3 93 66.7
Migut.K01177 Erythranthe guttata HOM05D005952 ORTHO05D007262 2.1e-18 97.8 102 60.8
Cre12.g542950 Chlamydomonas reinhardtii HOM05D005952 ORTHO05D007262 1.0e-17 95.5 290 30.0
Oeu029609.1 Olea europaea HOM05D005952 ORTHO05D007262 8.8e-17 92.4 62 66.1
MCO04G375 Micromonas commoda HOM05D005952 ORTHO05D007262 2.0e-16 91.3 279 28.3
SEGI_30692 Sequoiadendron giganteum HOM05D005952 ORTHO05D007262 8.2e-15 85.9 115 42.6
BcaC03g16356 Brassica carinata HOM05D029489 ORTHO05D007262 5.7e-08 63.2 38 76.3
BcaC01g03672 Brassica carinata HOM05D029489 ORTHO05D091160 2.4e-06 57.8 34 76.5
BcaC04g20962 Brassica carinata HOM05D029489 ORTHO05D090624 2.4e-06 57.8 34 76.5


User provided reference genes

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