Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G2218 Fragaria x ananassa HOM05D004594 ORTHO05D005225 0.0e+00 2322.4 1359 100.0
FAN17G1193 Fragaria x ananassa HOM05D004594 ORTHO05D005225 0.0e+00 2215.7 1362 95.8
FvH4_4g31060 Fragaria vesca HOM05D004594 ORTHO05D005225 0.0e+00 2211.0 1364 95.6
FAN22G0563 Fragaria x ananassa HOM05D004594 ORTHO05D005225 0.0e+00 2190.2 1362 95.3
FAN12G0764 Fragaria x ananassa HOM05D004594 ORTHO05D005225 0.0e+00 2157.5 1389 92.6
RcHm_v2.0_Chr4g0439441 Rosa chinensis HOM05D004594 ORTHO05D005225 0.0e+00 1974.9 1382 85.5
MD16G1069300 Malus domestica HOM05D004594 ORTHO05D005225 0.0e+00 1510.7 1396 67.8
Prupe.1G277900 Prunus persica HOM05D004594 ORTHO05D005225 0.0e+00 1426.4 1412 66.1
Cfa008959 Carpinus fangiana HOM05D004594 ORTHO05D005225 0.0e+00 1253.4 1423 60.2
Dinv02961 Davidia involucrata HOM05D004594 ORTHO05D005225 0.0e+00 1248.4 1423 59.3
CANSAT64G0453 Cannabis sativa HOM05D004594 ORTHO05D005225 0.0e+00 1228.0 1425 58.2
Haze_11988 Corylus avellana HOM05D004594 ORTHO05D005225 0.0e+00 1218.8 1501 55.9
CiPaw.06G087400 Carya illinoinensis HOM05D004594 ORTHO05D005225 0.0e+00 1184.1 1406 55.4
QL03p068116 Quercus lobata HOM05D004594 ORTHO05D005225 0.0e+00 1175.6 1440 54.9
Duzib248G1210 Durio zibethinus HOM05D004594 ORTHO05D005225 0.0e+00 1158.3 1392 55.6
CiPaw.05G132100 Carya illinoinensis HOM05D004594 ORTHO05D005225 0.0e+00 1139.8 1355 58.4
Potri.010G166100 Populus trichocarpa HOM05D004594 ORTHO05D005225 0.0e+00 1136.3 1463 53.6
TWI79G0308 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 0.0e+00 1117.4 1431 53.2
Manes.05G104800 Manihot esculenta HOM05D004594 ORTHO05D005225 0.0e+00 1102.8 1417 55.1
Thecc.02G342500 Theobroma cacao HOM05D004594 ORTHO05D005225 0.0e+00 1097.8 1402 54.1
Ciclev10030522m.g Citrus clementina HOM05D004594 ORTHO05D005225 0.0e+00 1088.9 1377 53.0
Manes.01G034200 Manihot esculenta HOM05D004594 ORTHO05D005225 0.0e+00 1088.9 1419 53.8
TWI75G1472 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 0.0e+00 1083.6 1482 50.4
CsaV3_5G025180 Cucumis sativus L. HOM05D004594 ORTHO05D005225 9.3e-312 1074.7 1475 52.6
Phvul.003G045700 Phaseolus vulgaris HOM05D004594 ORTHO05D005225 2.0e-309 1066.2 1461 54.1
ClCG09G021930 Citrullus lanatus HOM05D004594 ORTHO05D005225 1.1e-307 1060.4 1507 51.2
MELO3C002967.2 Cucumis melo HOM05D004594 ORTHO05D005225 9.8e-304 1047.3 1470 52.0
Eucgr.G02485 Eucalyptus grandis HOM05D004594 ORTHO05D005225 2.9e-303 1045.8 1444 50.3
Sed0022637 Sechium edule HOM05D004594 ORTHO05D005225 1.4e-302 1043.5 1431 51.7
GSVIVG01019950001 Vitis vinifera HOM05D004594 ORTHO05D005225 1.9e-302 1043.1 1429 50.7
Gohir.D04G191200 Gossypium hirsutum HOM05D004594 ORTHO05D005225 7.0e-302 1041.2 1417 52.0
VMungo1215G3128 Vigna mungo HOM05D004594 ORTHO05D005225 1.2e-301 1040.4 1476 51.8
Actinidia11790 Actinidia chinensis HOM05D004594 ORTHO05D005225 3.0e-300 1035.8 1495 50.2
Gorai.012G186600 Gossypium raimondii HOM05D004594 ORTHO05D005225 6.2e-298 1028.1 1404 51.9
TAR371G0293 Trochodendron aralioides HOM05D004594 ORTHO05D005225 4.6e-293 1011.9 1417 51.9
Glyma.01G051400 Glycine max HOM05D004594 ORTHO05D005225 1.1e-291 1007.3 1450 51.0
Sabra10G0126400 Salix brachista HOM05D004594 ORTHO05D005225 9.5e-291 1004.2 1507 50.1
Glyma.02G109900 Glycine max HOM05D004594 ORTHO05D005225 8.4e-287 991.1 1472 51.0
arahy.Tifrunner.gnm1.ann1.8R27D6 Arachis hypogaea HOM05D004594 ORTHO05D005225 7.1e-286 988.0 1516 49.5
Psat2g116320 Pisum sativum HOM05D004594 ORTHO05D005225 3.0e-284 982.6 1480 50.9
Ca_04825_v3 Cicer arietinum L. HOM05D004594 ORTHO05D005225 9.6e-283 977.6 1461 50.7
Lalb_Chr10g0098431 Lupinus albus HOM05D004594 ORTHO05D005225 4.4e-280 968.8 1518 48.3
Nn1g04524 Nelumbo nucifera HOM05D004594 ORTHO05D005225 3.2e-278 962.6 1428 49.6
EL10Ac3g06731 Beta vulgaris HOM05D004594 ORTHO05D005225 3.5e-277 959.1 1417 47.4
Sopen04g003850 Solanum pennellii HOM05D004594 ORTHO05D005225 1.9e-275 953.4 1427 46.5
PGR119G1944 Punica granatum HOM05D004594 ORTHO05D005225 3.6e-274 949.1 1399 49.9
Rhsim09G0077000 Rhododendron simsii HOM05D004594 ORTHO05D005225 1.5e-272 943.7 1510 46.9
DCAR_013185 Daucus carota HOM05D004594 ORTHO05D005225 6.4e-271 938.3 1441 49.1
AUR62035898 Chenopodium quinoa HOM05D004594 ORTHO05D005225 4.2e-270 935.6 1420 45.8
Cc00_g08470 Coffea canephora HOM05D004594 ORTHO05D005225 1.1e-267 927.5 1490 45.8
CAN.G194.5 Capsicum annuum HOM05D004594 ORTHO05D005225 2.0e-264 916.8 1398 47.1
Lj2g0016635 Lotus japonicus HOM05D004594 ORTHO05D005225 2.5e-262 909.8 1465 49.1
Hund25219 Selenicereus undatus HOM05D004594 ORTHO05D005225 1.6e-261 907.1 1448 46.8
TAR629G1990 Trochodendron aralioides HOM05D004594 ORTHO05D005225 5.1e-260 902.1 1243 52.7
Nitab4.5_0000129g0280 Nicotiana tabacum HOM05D004594 ORTHO05D005225 2.5e-259 899.8 1443 46.2
Migut.E00588 Erythranthe guttata HOM05D004594 ORTHO05D005225 1.3e-255 887.5 1447 45.5
Peaxi162Scf00329g00617 Petunia axillaris HOM05D004594 ORTHO05D005225 3.8e-255 885.9 1383 47.9
Aqoxy3G03454 Aquilegia oxysepala HOM05D004594 ORTHO05D005225 6.5e-255 885.2 1423 47.6
arahy.Tifrunner.gnm1.ann1.KB2NSX Arachis hypogaea HOM05D004594 ORTHO05D005225 1.8e-252 877.1 1666 43.8
ECA233G5935 Erigeron canadensis HOM05D004594 ORTHO05D005225 1.1e-251 874.4 1418 46.3
Medtr5g042000 Medicago truncatula HOM05D004594 ORTHO05D005225 6.3e-250 868.6 1540 45.3
PSO832G1080 Papaver somniferum HOM05D004594 ORTHO05D005225 6.3e-250 868.6 1427 45.8
PSO013G0146 Papaver somniferum HOM05D004594 ORTHO05D005225 6.9e-249 865.1 1420 45.8
Cpa.g.sc25.130 Carica papaya HOM05D004594 ORTHO05D005225 5.0e-247 859.0 1440 48.5
Lsat_1_v5_gn_3_33900 Lactuca sativa HOM05D004594 ORTHO05D005225 1.6e-245 854.0 1402 47.7
AUR62035342 Chenopodium quinoa HOM05D004594 ORTHO05D005225 3.6e-245 852.8 1380 44.3
TPR.G34709 Trifolium pratense HOM05D004594 ORTHO05D005225 4.8e-242 842.4 1448 48.1
Atru.chr11.1750 Acer truncatum HOM05D004594 ORTHO05D005225 1.4e-241 840.9 711 66.9
Solyc04g008680.4 Solanum lycopersicum HOM05D004594 ORTHO05D005225 2.6e-240 836.6 1324 46.3
Sc11g0002090 Simmondsia chinensis HOM05D004594 ORTHO05D005225 2.9e-239 833.2 1202 50.4
CARHR145490 Cardamine hirsuta HOM05D004594 ORTHO05D005225 5.0e-239 832.4 1457 44.1
Carub.0005s0198 Capsella rubella HOM05D004594 ORTHO05D005225 7.2e-238 828.6 1452 44.6
Ah.13g075020 Amaranthus hybridus HOM05D004594 ORTHO05D005225 2.7e-237 826.6 1439 43.8
THA.LOC104824075 Tarenaya hassleriana HOM05D004594 ORTHO05D005225 1.4e-233 814.3 1460 44.3
Nitab4.5_0001419g0070 Nicotiana tabacum HOM05D004594 ORTHO05D005225 6.5e-231 805.4 1497 41.6
Sp2g14100 Schrenkiella parvula HOM05D004594 ORTHO05D005225 3.1e-225 786.6 1470 43.7
AL5G12800 Arabidopsis lyrata HOM05D004594 ORTHO05D005225 7.7e-224 781.9 1462 44.8
Oeu044046.4 Olea europaea HOM05D004594 ORTHO05D005225 1.4e-220 771.2 1210 46.4
SGA_v2.0_scaffold140G35452 Striga asiatica HOM05D004594 ORTHO05D005225 1.2e-219 768.1 1488 41.7
ECA246G2651 Erigeron canadensis HOM05D004594 ORTHO05D005225 4.8e-218 762.7 1496 41.6
BcaB07g30683 Brassica carinata HOM05D004594 ORTHO05D005225 1.4e-217 761.1 1419 42.6
C09p31000 Brassica napus HOM05D004594 ORTHO05D005225 5.0e-215 752.7 1411 42.6
AT2G03150 Arabidopsis thaliana HOM05D004594 ORTHO05D005225 6.5e-215 752.3 1465 43.1
Lsat_1_v5_gn_8_32581 Lactuca sativa HOM05D004594 ORTHO05D005225 7.2e-214 748.8 1388 43.7
BcaC04g21505 Brassica carinata HOM05D004594 ORTHO05D005225 1.6e-213 747.7 1414 42.5
A09p24110 Brassica napus HOM05D004594 ORTHO05D005225 1.8e-212 744.2 1409 42.5
BraA09t38011Z Brassica rapa HOM05D004594 ORTHO05D005225 1.8e-212 744.2 1409 42.5
HanXRQChr08g0224741 Helianthus annuus HOM05D004594 ORTHO05D005225 5.2e-212 742.7 1379 43.7
BolC9t55959H Brassica oleracea HOM05D004594 ORTHO05D005225 2.6e-211 740.3 1410 42.3
Aa31LG2G7300 Aethionema arabicum HOM05D004594 ORTHO05D005225 1.1e-206 724.9 1423 42.2
HanXRQChr17g0540651 Helianthus annuus HOM05D004594 ORTHO05D005225 3.6e-205 719.9 1370 47.4
Thhalv10005550m.g Eutrema salsugineum HOM05D004594 ORTHO05D005225 9.8e-203 711.8 1463 42.3
ATR0564G229 Amborella trichopoda HOM05D004594 ORTHO05D005225 1.7e-191 674.5 1466 41.4
CDE07G1889 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 2.8e-189 667.2 1414 39.7
MBI06_g33529_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 4.4e-187 659.8 1049 44.1
HanXRQChr14g0429131 Helianthus annuus HOM05D004594 ORTHO05D005225 3.9e-175 620.2 1393 41.8
Zm00001eb384230 Zea mays HOM05D004594 ORTHO05D005225 1.5e-163 581.6 1487 36.2
Gohir.A04G146601 Gossypium hirsutum HOM05D004594 ORTHO05D005225 2.6e-163 580.9 579 61.1
SHI24774 Sapria himalayana HOM05D004594 ORTHO05D005225 1.7e-154 551.6 1168 34.7
CDE04G0114 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 2.1e-149 534.6 1379 34.7
Zm00001eb277410 Zea mays HOM05D004594 ORTHO05D005225 2.1e-144 518.1 1480 36.3
HanXRQChr08g0225211 Helianthus annuus HOM05D004594 ORTHO05D005225 5.7e-142 510.0 1264 38.0
HPP92_001998 Vanilla planifolia HOM05D004594 ORTHO05D005225 1.4e-137 495.4 1296 37.6
unitig_52.g17301 Utricularia gibba HOM05D004594 ORTHO05D005225 6.7e-135 486.5 758 44.3
C02p51140 Brassica napus HOM05D004594 ORTHO05D005225 1.7e-125 455.3 1260 34.5
Gohir.1Z049516 Gossypium hirsutum HOM05D004594 ORTHO05D005225 1.1e-124 452.6 602 49.0
SEGI_16638 Sequoiadendron giganteum HOM05D004594 ORTHO05D005225 6.1e-96 357.1 1415 33.6
vmacro10769 Vaccinium macrocarpon HOM05D004594 ORTHO05D005225 8.0e-80 303.5 814 39.6
Atru.chr11.1748 Acer truncatum HOM05D004594 ORTHO05D005225 2.9e-69 268.5 419 53.2
Pp3c12_12730 Physcomitrium patens HOM05D004594 ORTHO05D005225 6.0e-67 260.8 1466 25.7
Mapoly0102s0024 Marchantia polymorpha HOM05D004594 ORTHO05D005225 7.3e-65 253.8 1443 25.7
Pp3c4_10880 Physcomitrium patens HOM05D004594 ORTHO05D005225 6.4e-61 240.7 1304 26.2
SMO172G0003 Selaginella moellendorffii HOM05D004594 ORTHO05D005225 1.9e-60 239.2 1139 27.6
CBR_g5747 Chara braunii HOM05D004594 ORTHO05D005225 1.6e-56 226.1 268 39.6
AagrBONN_evm.TU.Sc2ySwM_340.1878 Anthoceros agrestis HOM05D004594 ORTHO05D005225 1.5e-54 219.5 1313 26.0
Lj3E852T1 Lonicera japonica HOM05D004594 ORTHO05D005225 1.9e-49 202.6 259 48.3
unitig_52.g17300 Utricularia gibba HOM05D004594 ORTHO05D005225 8.4e-45 187.2 384 39.1
Os06g0562700 Oryza sativa ssp. japonica HOM05D004594 ORTHO05D005225 4.5e-38 164.9 467 40.5
Rhsim04G0150600 Rhododendron simsii HOM05D004594 ORTHO05D005225 1.8e-34 152.9 175 46.3
BcaC03g17185 Brassica carinata HOM05D004594 ORTHO05D005225 2.3e-34 152.5 339 39.5
Lj3E852G2 Lonicera japonica HOM05D004594 ORTHO05D005225 7.4e-33 147.5 225 56.0
Oeu032954.1 Olea europaea HOM05D004594 ORTHO05D005225 6.9e-31 141.0 92 67.4
Oeu034639.1 Olea europaea HOM05D004594 ORTHO05D005225 4.9e-29 134.8 305 39.0
Lj3A852T53 Lonicera japonica HOM05D004594 ORTHO05D005225 7.9e-27 127.5 139 54.7
BolC2t11204H Brassica oleracea HOM05D004594 ORTHO05D005225 6.7e-26 124.4 776 27.4
Gohir.1Z049616 Gossypium hirsutum HOM05D004594 ORTHO05D005225 7.4e-25 120.9 281 42.3
RcHm_v2.0_Chr3g0458311 Rosa chinensis HOM05D004594 ORTHO05D005225 5.3e-23 114.8 89 70.8
TPR.G11445 Trifolium pratense HOM05D004594 ORTHO05D005225 1.0e-21 110.5 64 82.8
Lsat_1_v5_gn_3_92661 Lactuca sativa HOM05D004594 ORTHO05D005225 9.3e-20 104.0 69 63.8
MBI02_g24139_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 1.2e-19 103.6 112 50.9
Lsat_1_v5_gn_4_108040 Lactuca sativa HOM05D004594 ORTHO05D005225 2.7e-19 102.4 64 67.2
MBI02_g24140_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 1.9e-17 96.3 125 47.2
CBR_g5749 Chara braunii HOM05D004594 ORTHO05D005225 2.2e-16 92.8 303 29.0
Lsat_1_v5_gn_1_53021 Lactuca sativa HOM05D004594 ORTHO05D005225 9.0e-15 87.4 60 61.7
QL03p068420 Quercus lobata HOM05D004594 ORTHO05D005225 4.5e-14 85.1 264 36.0
A02p33250 Brassica napus HOM05D004594 ORTHO05D005225 5.9e-14 84.7 79 49.4
Cre06.g283634 Chlamydomonas reinhardtii HOM05D004594 ORTHO05D005225 1.3e-13 83.6 296 23.0
A02p33260 Brassica napus HOM05D004594 ORTHO05D005225 3.6e-11 75.5 50 64.0
QL03p068414 Quercus lobata HOM05D004594 ORTHO05D005225 3.6e-11 75.5 57 61.4
MBI05_g14664_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 5.1e-10 71.6 50 62.0
SHI24778 Sapria himalayana HOM05D004594 ORTHO05D005225 8.8e-10 70.9 143 40.6
HPP92_001999 Vanilla planifolia HOM05D004594 ORTHO05D005225 8.8e-10 70.9 75 50.7
RcHm_v2.0_Chr7g0218771 Rosa chinensis HOM05D004594 ORTHO05D005225 1.5e-09 70.1 89 46.1
BcaB05g23630 Brassica carinata HOM05D004594 ORTHO05D005225 2.6e-09 69.3 145 31.0
Oeu052406.1 Olea europaea HOM05D004594 ORTHO05D005225 4.4e-09 68.6 106 47.2
Actinidia04099 Actinidia chinensis HOM05D004594 ORTHO05D005225 3.7e-08 65.5 371 31.0
MBI07_g23220_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 3.7e-08 65.5 94 39.4
Nn3g17298 Nelumbo nucifera HOM05D004594 ORTHO05D005225 2.4e-07 62.8 70 45.7
BraA02t08348Z Brassica rapa HOM05D004594 ORTHO05D005225 3.1e-07 62.4 41 61.0


User provided reference genes

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