Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G1942 Fragaria x ananassa HOM05D004138 ORTHO05D004898 4.1e-173 611.3 308 100.0
FAN17G0737 Fragaria x ananassa HOM05D004138 ORTHO05D004898 6.5e-171 604.0 308 98.7
FAN12G1931 Fragaria x ananassa HOM05D004138 ORTHO05D004898 2.3e-147 525.8 267 98.9
FvH4_4g15510 Fragaria vesca HOM05D004138 ORTHO05D004898 5.0e-147 524.6 269 98.1
FAN22G1640 Fragaria x ananassa HOM05D004138 ORTHO05D004898 9.5e-146 520.4 267 98.5
RcHm_v2.0_Chr4g0416251 Rosa chinensis HOM05D004138 ORTHO05D004898 9.9e-127 457.2 269 88.5
MD13G1192800 Malus domestica HOM05D004138 ORTHO05D004898 1.3e-105 387.1 282 75.5
MD16G1193500 Malus domestica HOM05D004138 ORTHO05D004898 1.1e-104 384.0 283 73.9
SalBow3G1121 Salvia bowleyana HOM05D004138 ORTHO05D004898 6.0e-100 368.2 235 78.3
CANSAT78G2043 Cannabis sativa HOM05D004138 ORTHO05D004898 7.9e-100 367.9 281 74.0
Potri.010G087600 Populus trichocarpa HOM05D004138 ORTHO05D004898 2.3e-99 366.3 278 73.0
TWI15G0835 Tripterygium wilfordii HOM05D004138 ORTHO05D004898 2.3e-99 366.3 216 84.7
Cfa015643 Carpinus fangiana HOM05D004138 ORTHO05D004898 3.0e-99 365.9 270 71.9
arahy.Tifrunner.gnm1.ann1.WZ653D Arachis hypogaea HOM05D004138 ORTHO05D004898 6.7e-99 364.8 277 73.3
CiPaw.01G165700 Carya illinoinensis HOM05D004138 ORTHO05D004898 1.9e-98 363.2 276 71.0
Phvul.007G275100 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 1.9e-98 363.2 272 72.1
Lj5g0002897 Lotus japonicus HOM05D004138 ORTHO05D004898 2.5e-98 362.8 272 71.7
Phvul.007G057200 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 4.3e-98 362.1 272 71.7
VMungo0720G0383 Vigna mungo HOM05D004138 ORTHO05D004898 4.3e-98 362.1 272 72.4
VMungo0720G1944 Vigna mungo HOM05D004138 ORTHO05D004898 4.3e-98 362.1 274 71.5
TPR.G5464 Trifolium pratense HOM05D004138 ORTHO05D004898 5.6e-98 361.7 271 72.3
arahy.Tifrunner.gnm1.ann1.M0DXBI Arachis hypogaea HOM05D004138 ORTHO05D004898 7.4e-98 361.3 230 81.3
arahy.Tifrunner.gnm1.ann1.Y7X6HY Arachis hypogaea HOM05D004138 ORTHO05D004898 7.4e-98 361.3 273 71.8
Manes.03G178800 Manihot esculenta HOM05D004138 ORTHO05D004898 7.4e-98 361.3 208 86.5
Glyma.20G145900 Glycine max HOM05D004138 ORTHO05D004898 9.6e-98 360.9 274 72.6
QL06p002509 Quercus lobata HOM05D004138 ORTHO05D004898 9.6e-98 360.9 204 86.8
Atru.ctg752_3.80 Acer truncatum HOM05D004138 ORTHO05D004898 1.6e-97 360.1 223 81.2
Psat6g207600 Pisum sativum HOM05D004138 ORTHO05D004898 2.1e-97 359.8 271 72.0
Sp7g13050 Schrenkiella parvula HOM05D004138 ORTHO05D004898 2.1e-97 359.8 274 70.4
Lalb_Chr10g0096121 Lupinus albus HOM05D004138 ORTHO05D004898 3.7e-97 359.0 275 70.5
AL7G40920 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 4.8e-97 358.6 263 72.2
Carub.0007s2719 Capsella rubella HOM05D004138 ORTHO05D004898 4.8e-97 358.6 265 73.6
CiPaw.02G097200 Carya illinoinensis HOM05D004138 ORTHO05D004898 4.8e-97 358.6 278 71.6
TPR.G34563 Trifolium pratense HOM05D004138 ORTHO05D004898 8.1e-97 357.8 272 71.3
Hma1.2p1_1344F.1_g277140 Hydrangea macrophylla HOM05D004138 ORTHO05D004898 1.4e-96 357.1 244 77.5
CsaV3_7G022530 Cucumis sativus L. HOM05D004138 ORTHO05D004898 1.8e-96 356.7 277 71.5
Eucgr.H03482 Eucalyptus grandis HOM05D004138 ORTHO05D004898 2.4e-96 356.3 226 79.2
Oeu050278.3 Olea europaea HOM05D004138 ORTHO05D004898 2.4e-96 356.3 274 71.5
PGR004G1517 Punica granatum HOM05D004138 ORTHO05D004898 2.4e-96 356.3 271 69.4
BcaB02g07851 Brassica carinata HOM05D004138 ORTHO05D004898 3.1e-96 355.9 275 71.6
Migut.N00183 Erythranthe guttata HOM05D004138 ORTHO05D004898 4.0e-96 355.5 239 76.2
CARHR221500 Cardamine hirsuta HOM05D004138 ORTHO05D004898 5.3e-96 355.1 262 72.1
Ca_10902_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 6.9e-96 354.8 271 71.6
AT4G14910 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 9.0e-96 354.4 262 72.9
Duzib052G0532 Durio zibethinus HOM05D004138 ORTHO05D004898 9.0e-96 354.4 277 71.1
Gorai.006G239100 Gossypium raimondii HOM05D004138 ORTHO05D004898 9.0e-96 354.4 269 69.5
Nitab4.5_0001560g0020 Nicotiana tabacum HOM05D004138 ORTHO05D004898 9.0e-96 354.4 265 74.0
Sed0017770 Sechium edule HOM05D004138 ORTHO05D004898 9.0e-96 354.4 270 71.1
THA.LOC104808545 Tarenaya hassleriana HOM05D004138 ORTHO05D004898 1.5e-95 353.6 205 85.4
Thecc.04G231800 Theobroma cacao HOM05D004138 ORTHO05D004898 1.5e-95 353.6 270 68.9
BcaB04g20518 Brassica carinata HOM05D004138 ORTHO05D004898 2.0e-95 353.2 271 69.7
CSS0016260 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 2.0e-95 353.2 278 69.4
Ciclev10005599m.g Citrus clementina HOM05D004138 ORTHO05D004898 2.0e-95 353.2 279 71.3
Thhalv10021310m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 2.6e-95 352.8 224 79.9
Gohir.D09G218200 Gossypium hirsutum HOM05D004138 ORTHO05D004898 2.6e-95 352.8 265 70.2
Lj6A608T71 Lonicera japonica HOM05D004138 ORTHO05D004898 2.6e-95 352.8 219 79.5
Gohir.A09G215700 Gossypium hirsutum HOM05D004138 ORTHO05D004898 3.4e-95 352.4 269 68.4
Haze_00903 Corylus avellana HOM05D004138 ORTHO05D004898 4.5e-95 352.1 274 70.8
PSO210G3182 Papaver somniferum HOM05D004138 ORTHO05D004898 4.5e-95 352.1 273 69.6
Cc03_g03750 Coffea canephora HOM05D004138 ORTHO05D004898 5.8e-95 351.7 214 80.8
Thhalv10025980m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 5.8e-95 351.7 272 70.2
PSO832G0920 Papaver somniferum HOM05D004138 ORTHO05D004898 5.8e-95 351.7 273 70.3
Dinv44535 Davidia involucrata HOM05D004138 ORTHO05D004898 7.6e-95 351.3 206 84.5
Medtr1g103820 Medicago truncatula HOM05D004138 ORTHO05D004898 7.6e-95 351.3 271 70.5
Sp3g20190 Schrenkiella parvula HOM05D004138 ORTHO05D004898 9.9e-95 350.9 271 70.1
Lsat_1_v5_gn_2_31480 Lactuca sativa HOM05D004138 ORTHO05D004898 1.3e-94 350.5 275 70.5
Carub.0003s2260 Capsella rubella HOM05D004138 ORTHO05D004898 1.7e-94 350.1 224 79.9
DCAR_027216 Daucus carota HOM05D004138 ORTHO05D004898 1.7e-94 350.1 206 85.0
TAR365G0475 Trochodendron aralioides HOM05D004138 ORTHO05D004898 1.7e-94 350.1 274 69.7
Ca_26329_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 2.2e-94 349.7 264 70.8
Solyc09g076020.3 Solanum lycopersicum HOM05D004138 ORTHO05D004898 2.2e-94 349.7 277 69.7
Nn4g26636 Nelumbo nucifera HOM05D004138 ORTHO05D004898 2.9e-94 349.4 255 72.9
PGSC0003DMG400030085 Solanum tuberosum HOM05D004138 ORTHO05D004898 3.8e-94 349.0 210 83.8
AT3G22425 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 4.9e-94 348.6 272 69.5
BcaB06g26344 Brassica carinata HOM05D004138 ORTHO05D004898 4.9e-94 348.6 254 72.8
CSS0012312 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 4.9e-94 348.6 263 71.1
MELO3C012647.2 Cucumis melo HOM05D004138 ORTHO05D004898 8.4e-94 347.8 311 63.3
MSTRG.21855 Avicennia marina HOM05D004138 ORTHO05D004898 1.1e-93 347.4 242 74.8
CAN.G490.3 Capsicum annuum HOM05D004138 ORTHO05D004898 1.1e-93 347.4 263 73.0
CARHR098330 Cardamine hirsuta HOM05D004138 ORTHO05D004898 1.1e-93 347.4 224 78.6
Sopen09g030850 Solanum pennellii HOM05D004138 ORTHO05D004898 1.1e-93 347.4 276 69.2
TAR636G0642 Trochodendron aralioides HOM05D004138 ORTHO05D004898 1.1e-93 347.4 224 78.1
BraA01t03394Z Brassica rapa HOM05D004138 ORTHO05D004898 1.4e-93 347.1 258 70.9
EL10Ac1g01312 Beta vulgaris HOM05D004138 ORTHO05D004898 1.9e-93 346.7 211 81.0
BcaC05g28070 Brassica carinata HOM05D004138 ORTHO05D004898 1.9e-93 346.7 227 78.0
C05p40930 Brassica napus HOM05D004138 ORTHO05D004898 1.9e-93 346.7 227 78.0
DCAR_002386 Daucus carota HOM05D004138 ORTHO05D004898 1.9e-93 346.7 268 69.4
Lj3A735T49 Lonicera japonica HOM05D004138 ORTHO05D004898 2.4e-93 346.3 263 70.7
BcaC09g49174 Brassica carinata HOM05D004138 ORTHO05D004898 5.5e-93 345.1 269 69.1
A01p32660 Brassica napus HOM05D004138 ORTHO05D004898 7.1e-93 344.7 258 71.3
CDE07G0326 Ceratophyllum demersum HOM05D004138 ORTHO05D004898 1.2e-92 344.0 208 81.7
A05p26300 Brassica napus HOM05D004138 ORTHO05D004898 1.6e-92 343.6 250 72.4
BolC5t32835H Brassica oleracea HOM05D004138 ORTHO05D004898 1.6e-92 343.6 225 77.8
Lalb_Chr17g0338611 Lupinus albus HOM05D004138 ORTHO05D004898 2.1e-92 343.2 271 70.1
C01p41840 Brassica napus HOM05D004138 ORTHO05D004898 3.5e-92 342.4 267 68.9
BolC1t04138H Brassica oleracea HOM05D004138 ORTHO05D004898 4.6e-92 342.0 267 68.9
AUR62033623 Chenopodium quinoa HOM05D004138 ORTHO05D004898 4.6e-92 342.0 206 83.0
Sc10g0004960 Simmondsia chinensis HOM05D004138 ORTHO05D004898 7.9e-92 341.3 206 84.5
ECA238G3454 Erigeron canadensis HOM05D004138 ORTHO05D004898 1.0e-91 340.9 271 66.4
Rhsim02G0024100 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.3e-91 340.5 301 63.5
AUR62034751 Chenopodium quinoa HOM05D004138 ORTHO05D004898 3.0e-91 339.3 204 82.8
Aa31LG8G8990 Aethionema arabicum HOM05D004138 ORTHO05D004898 5.1e-91 338.6 275 66.9
Haze_03894 Corylus avellana HOM05D004138 ORTHO05D004898 8.7e-91 337.8 274 69.0
Aqoxy2G03389 Aquilegia oxysepala HOM05D004138 ORTHO05D004898 2.5e-90 336.3 274 68.2
ATR0697G231 Amborella trichopoda HOM05D004138 ORTHO05D004898 3.3e-90 335.9 208 81.2
Prupe.1G013300 Prunus persica HOM05D004138 ORTHO05D004898 1.1e-88 330.9 282 67.7
HanXRQChr14g0432251 Helianthus annuus HOM05D004138 ORTHO05D004898 1.4e-88 330.5 272 65.8
HanXRQChr09g0265721 Helianthus annuus HOM05D004138 ORTHO05D004898 4.0e-88 328.9 219 74.9
Os04g0617800 Oryza sativa ssp. japonica HOM05D004138 ORTHO05D004898 2.6e-87 326.2 208 79.3
GSVIVG01017973001 Vitis vinifera HOM05D004138 ORTHO05D004898 3.4e-87 325.9 215 74.9
Mapoly0095s0045 Marchantia polymorpha HOM05D004138 ORTHO05D004898 1.0e-86 324.3 190 83.7
Pp3c13_21930 Physcomitrium patens HOM05D004138 ORTHO05D004898 1.7e-86 323.6 190 82.1
Rhsim02G0024500 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.1e-85 320.9 314 58.3
Actinidia36959 Actinidia chinensis HOM05D004138 ORTHO05D004898 1.6e-84 317.0 265 66.0
Sed0010859 Sechium edule HOM05D004138 ORTHO05D004898 1.6e-84 317.0 276 65.2
Cpa.g.sc58.111 Carica papaya HOM05D004138 ORTHO05D004898 2.7e-84 316.2 272 65.8
Zm00001eb070570 Zea mays HOM05D004138 ORTHO05D004898 7.9e-84 314.7 201 79.1
Potri.008G152701 Populus trichocarpa HOM05D004138 ORTHO05D004898 2.2e-81 306.6 195 80.0
CBR_g48324 Chara braunii HOM05D004138 ORTHO05D004898 6.3e-81 305.1 190 77.4
Nitab4.5_0000043g0130 Nicotiana tabacum HOM05D004138 ORTHO05D004898 7.7e-79 298.1 307 58.3
SMO367G0933 Selaginella moellendorffii HOM05D004138 ORTHO05D004898 1.0e-78 297.7 225 67.6
Psat6g050360 Pisum sativum HOM05D004138 ORTHO05D004898 1.7e-78 297.0 158 90.5
ClCG06G006210 Citrullus lanatus HOM05D004138 ORTHO05D004898 2.2e-78 296.6 282 62.8
Hund12131 Selenicereus undatus HOM05D004138 ORTHO05D004898 6.5e-78 295.0 235 68.1
Rhsim02G0024700 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.5e-77 293.1 317 55.8
SGA_v2.0_scaffold20G09126 Striga asiatica HOM05D004138 ORTHO05D004898 1.2e-76 290.8 228 70.2
Oeu031232.1 Olea europaea HOM05D004138 ORTHO05D004898 1.8e-75 287.0 155 88.4
SGA_v2.0_scaffold10G05080 Striga asiatica HOM05D004138 ORTHO05D004898 1.8e-75 287.0 194 73.2
Rhsim02G0025100 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.1e-74 284.3 239 65.3
COL.COLO4_04735 Corchorus olitorius HOM05D004138 ORTHO05D004898 1.7e-73 280.4 158 86.1
unitig_0.g724 Utricularia gibba HOM05D004952 ORTHO05D006131 2.8e-73 279.6 169 78.7
Cre02.g103850 Chlamydomonas reinhardtii HOM05D004138 ORTHO05D004898 4.8e-73 278.9 208 66.3
Rhsim02G0025200 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.4e-69 267.3 278 57.2
Rhsim02G0024200 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.9e-69 266.9 151 85.4
Peaxi162Scf00092g01021 Petunia axillaris HOM05D004138 ORTHO05D004898 1.8e-67 260.4 184 73.4
Rhsim02G0024800 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.3e-67 260.0 274 56.6
SEGI_10012 Sequoiadendron giganteum HOM05D004138 ORTHO05D004898 1.5e-66 257.3 148 83.1
Sabra10G0055200 Salix brachista HOM05D004138 ORTHO05D004898 3.3e-66 256.1 177 77.4
Dinv13992 Davidia involucrata HOM05D004138 ORTHO05D004898 1.3e-65 254.2 230 63.9
HPP92_026352 Vanilla planifolia HOM05D004138 ORTHO05D004898 1.7e-65 253.8 190 67.9
MBI06_g26001_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 2.2e-62 243.4 284 54.6
AL7G43460 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 2.9e-62 243.0 151 80.8
AL7G43530 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 8.5e-62 241.5 149 81.2
MBI06_g37250_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 2.5e-61 240.0 202 65.3
AagrBONN_evm.TU.Sc2ySwM_228.3076 Anthoceros agrestis HOM05D004138 ORTHO05D004898 3.1e-56 223.0 136 76.5
Haze_27397 Corylus avellana HOM05D004138 ORTHO05D004898 1.6e-55 220.7 204 49.0
CDE10G0981 Ceratophyllum demersum HOM05D000366 ORTHO05D000437 3.5e-55 219.5 208 59.6
Lj2g0010828 Lotus japonicus HOM05D004138 ORTHO05D004898 1.1e-53 214.5 159 71.7
arahy.Tifrunner.gnm1.ann1.PP7NHW Arachis hypogaea HOM05D004138 ORTHO05D004898 3.2e-53 213.0 189 64.6
Ah.04g154580 Amaranthus hybridus HOM05D004138 ORTHO05D004898 4.1e-48 196.1 172 64.5
ATR0661G018 Amborella trichopoda HOM05D004138 ORTHO05D004898 2.2e-46 190.3 125 75.2
Sabra08G0116300 Salix brachista HOM05D004138 ORTHO05D004898 6.5e-46 188.7 339 40.7
SHI00436 Sapria himalayana HOM05D004138 ORTHO05D004898 1.3e-38 164.5 145 59.3
PRCOL_00007017 Prasinoderma coloniale HOM05D004138 ORTHO05D004898 1.8e-35 154.1 183 42.6
MCO15G615 Micromonas commoda HOM05D004138 ORTHO05D004898 2.6e-34 150.2 195 40.5
Cfa024592 Carpinus fangiana HOM05D004138 ORTHO05D004898 1.2e-31 141.4 208 38.9
Actinidia40147 Actinidia chinensis HOM05D004138 ORTHO05D004898 3.3e-29 133.3 79 82.3
arahy.Tifrunner.gnm1.ann1.UX9Z2U Arachis hypogaea HOM05D004138 ORTHO05D004898 1.3e-22 111.3 62 85.5
arahy.Tifrunner.gnm1.ann1.J4BC6Z Arachis hypogaea HOM05D004138 ORTHO05D004898 6.6e-22 109.0 62 83.9
Medtr8g045710 Medicago truncatula HOM05D004138 ORTHO05D004898 1.5e-18 97.8 59 83.1
Psat4g223320 Pisum sativum HOM05D004138 ORTHO05D004898 2.0e-18 97.4 71 70.4
CARHR221520 Cardamine hirsuta HOM05D004138 ORTHO05D004898 6.2e-12 75.9 55 69.1
Medtr1g071390 Medicago truncatula HOM05D004138 ORTHO05D004898 1.2e-10 71.6 118 38.1
Rhsim02G0025000 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.6e-10 70.5 155 40.6
AL5G12050 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 3.4e-10 70.1 40 82.5
CSS0002625 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 1.3e-09 68.2 36 86.1
Rhsim04G0123400 Rhododendron simsii HOM05D007559 ORTHO05D009642 1.3e-09 68.2 40 82.5
Actinidia40148 Actinidia chinensis HOM05D004138 ORTHO05D004898 2.2e-09 67.4 80 50.0
arahy.Tifrunner.gnm1.ann1.RWV13Y Arachis hypogaea HOM05D000351 ORTHO05D018478 1.4e-08 64.7 32 93.8
CSS0029286 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 7.8e-07 58.9 42 66.7
Rhsim08G0128300 Rhododendron simsii HOM05D004138 ORTHO05D339665 2.3e-06 57.4 31 83.9
CSS0040239 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 5.1e-06 56.2 34 76.5


User provided reference genes

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