Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G1429 Fragaria x ananassa HOM05D009820 ORTHO05D011171 1.7e-100 369.4 193 100.0
FvH4_4g22220 Fragaria vesca HOM05D009820 ORTHO05D011171 2.6e-93 345.5 193 93.8
FAN12G0969 Fragaria x ananassa HOM05D009820 ORTHO05D011171 8.4e-92 340.5 193 92.7
FAN12G3761 Fragaria x ananassa HOM05D009820 ORTHO05D011171 8.4e-92 340.5 193 92.7
FAN17G1765 Fragaria x ananassa HOM05D009820 ORTHO05D011171 1.2e-90 336.7 193 94.3
RcHm_v2.0_Chr4g0428451 Rosa chinensis HOM05D009820 ORTHO05D011171 7.4e-80 300.8 193 79.8
Prupe.1G211900 Prunus persica HOM05D009820 ORTHO05D011171 2.0e-45 186.4 195 55.9
Atru.chr12.1461 Acer truncatum HOM05D009820 ORTHO05D011171 2.2e-31 139.8 195 45.6
Atru.chr12.1466 Acer truncatum HOM05D009820 ORTHO05D011171 3.7e-31 139.0 195 45.1
GSVIVG01001118001 Vitis vinifera HOM05D004039 ORTHO05D011171 3.7e-31 139.0 175 49.7
TAR374G1519 Trochodendron aralioides HOM05D009820 ORTHO05D011171 7.0e-30 134.8 197 43.1
Potri.001G070200 Populus trichocarpa HOM05D009820 ORTHO05D011171 3.3e-27 125.9 181 47.0
Nn3g16210 Nelumbo nucifera HOM05D000742 ORTHO05D011171 9.5e-27 124.4 192 42.7
Sabra01G0049200 Salix brachista HOM05D009820 ORTHO05D011171 6.1e-26 121.7 186 46.2
Gohir.A03G153600 Gossypium hirsutum HOM05D009820 ORTHO05D011171 4.4e-24 115.5 213 39.9
Manes.08G099600 Manihot esculenta HOM05D009820 ORTHO05D011171 1.3e-23 114.0 191 40.8
Gorai.005G198200 Gossypium raimondii HOM05D009820 ORTHO05D011171 4.9e-23 112.1 213 39.0
Dinv14392 Davidia involucrata HOM05D009820 ORTHO05D011171 8.3e-23 111.3 188 39.9
Gohir.D02G176500 Gossypium hirsutum HOM05D009820 ORTHO05D011171 7.0e-22 108.2 207 40.6
Aqoxy5G02999 Aquilegia oxysepala HOM05D000742 ORTHO05D011171 2.3e-20 103.2 200 39.5
Thecc.02G188800 Theobroma cacao HOM05D009820 ORTHO05D011171 7.3e-19 98.2 204 37.3
MD16G1144300 Malus domestica HOM05D009820 ORTHO05D011171 1.1e-17 94.4 141 46.1
Aqoxy271s004 Aquilegia oxysepala HOM05D000742 ORTHO05D011171 1.3e-15 87.4 84 54.8
PGR119G0868 Punica granatum HOM05D009820 ORTHO05D011171 2.9e-15 86.3 78 51.3
HPP92_023044 Vanilla planifolia HOM05D043096 ORTHO05D011171 2.9e-15 86.3 199 33.7
CDE02G3752 Ceratophyllum demersum HOM05D000742 ORTHO05D011171 3.7e-15 85.9 205 31.7
Nn3g16209 Nelumbo nucifera HOM05D000742 ORTHO05D011171 8.3e-15 84.7 77 53.2
CDE06G0636 Ceratophyllum demersum HOM05D009820 ORTHO05D011171 5.4e-14 82.0 199 33.7
Eucgr.J01652 Eucalyptus grandis HOM05D009820 ORTHO05D011171 7.1e-14 81.6 77 50.6
PSO832G1700 Papaver somniferum HOM05D009820 ORTHO05D011171 7.8e-13 78.2 103 44.7
PSO591G0105 Papaver somniferum HOM05D009820 ORTHO05D011171 2.3e-12 76.6 103 40.8
CANSAT25G0662 Cannabis sativa HOM05D009820 ORTHO05D011171 1.5e-11 73.9 66 65.2
MBI07_g42008_MAGBIO Magnolia biondii HOM05D000742 ORTHO05D011171 1.6e-10 70.5 233 29.2
Migut.L01317 Erythranthe guttata HOM05D000742 ORTHO05D003741 2.3e-09 66.6 77 41.6
SEGI_34196 Sequoiadendron giganteum HOM05D000742 ORTHO05D003741 2.3e-09 66.6 237 27.0
vmacro05717 Vaccinium macrocarpon HOM05D000742 ORTHO05D003741 3.1e-09 66.2 69 46.4
Os04g0641400 Oryza sativa ssp. japonica HOM05D000742 ORTHO05D003741 5.2e-09 65.5 69 43.5
SEGI_14673 Sequoiadendron giganteum HOM05D000742 ORTHO05D003741 5.2e-09 65.5 70 45.7
Gohir.A09G019200 Gossypium hirsutum HOM05D000742 ORTHO05D003741 6.8e-09 65.1 151 31.1
Rhsim10G0041000 Rhododendron simsii HOM05D000742 ORTHO05D003741 6.8e-09 65.1 69 43.5
Zm00001eb431910 Zea mays HOM05D000742 ORTHO05D003741 6.8e-09 65.1 69 46.4
CSS0021678 Camellia sinensis var. sinensis HOM05D000742 ORTHO05D003741 8.9e-09 64.7 77 42.9
Cpa.g.sc14.16 Carica papaya HOM05D000742 ORTHO05D003741 8.9e-09 64.7 69 40.6
Gorai.006G021900 Gossypium raimondii HOM05D000742 ORTHO05D003741 1.5e-08 63.9 151 30.5
Glyma.09G239200 Glycine max HOM05D000742 ORTHO05D003741 2.0e-08 63.5 61 47.5
THA.LOC104821169 Tarenaya hassleriana HOM05D000742 ORTHO05D003741 2.0e-08 63.5 67 44.8
TWI60G1363 Tripterygium wilfordii HOM05D000742 ORTHO05D003741 2.6e-08 63.2 69 44.9
unitig_8.g3468 Utricularia gibba HOM05D000742 ORTHO05D003741 2.6e-08 63.2 75 40.0
VMungo1383G2053 Vigna mungo HOM05D000742 ORTHO05D003741 2.6e-08 63.2 67 44.8
Atru.chr8.129 Acer truncatum HOM05D000742 ORTHO05D003741 3.4e-08 62.8 119 32.8
CSS0009959 Camellia sinensis var. sinensis HOM05D000742 ORTHO05D003741 3.4e-08 62.8 69 43.5
Gohir.D09G018600 Gossypium hirsutum HOM05D000742 ORTHO05D003741 3.4e-08 62.8 151 30.5
Aqoxy6G02089 Aquilegia oxysepala HOM05D000742 ORTHO05D003741 7.6e-08 61.6 70 38.6
CSS0017870 Camellia sinensis var. sinensis HOM05D000742 ORTHO05D003741 7.6e-08 61.6 69 43.5
Ca_02742_v3 Cicer arietinum L. HOM05D000742 ORTHO05D003741 7.6e-08 61.6 61 45.9
Manes.15G177100 Manihot esculenta HOM05D000742 ORTHO05D003741 7.6e-08 61.6 69 43.5
Phvul.008G041900 Phaseolus vulgaris HOM05D000742 ORTHO05D003741 7.6e-08 61.6 67 44.8
Hund13224 Selenicereus undatus HOM05D000742 ORTHO05D003741 7.6e-08 61.6 71 40.8
Lalb_Chr10g0093321 Lupinus albus HOM05D000742 ORTHO05D003741 9.9e-08 61.2 122 33.6
SGA_v2.0_scaffold302G47837 Striga asiatica HOM05D000742 ORTHO05D003741 9.9e-08 61.2 75 37.3
BcaC08g46217 Brassica carinata HOM05D000742 ORTHO05D000924 1.3e-07 60.8 180 29.4
CSS0000597 Camellia sinensis var. sinensis HOM05D000742 ORTHO05D003741 1.7e-07 60.5 69 42.0
Glyma.18G258600 Glycine max HOM05D000742 ORTHO05D003741 1.7e-07 60.5 61 45.9
Lj1g0009798 Lotus japonicus HOM05D000742 ORTHO05D003741 1.7e-07 60.5 67 44.8
Psat3g196400 Pisum sativum HOM05D000742 ORTHO05D003741 1.7e-07 60.5 69 42.0
Sc11g0007020 Simmondsia chinensis HOM05D000742 ORTHO05D003741 1.7e-07 60.5 70 40.0
ATR0564G409 Amborella trichopoda HOM05D000742 ORTHO05D003741 2.2e-07 60.1 75 40.0
AUR62034388 Chenopodium quinoa HOM05D000742 ORTHO05D003741 2.2e-07 60.1 69 40.6
Cc11_g13280 Coffea canephora HOM05D000742 ORTHO05D003741 2.2e-07 60.1 75 38.7
COL.COLO4_05128 Corchorus olitorius HOM05D000742 ORTHO05D003741 2.2e-07 60.1 158 29.7
ECA234G3726 Erigeron canadensis HOM05D000742 ORTHO05D000924 2.2e-07 60.1 211 24.6
Solyc05g007200.4 Solanum lycopersicum HOM05D000742 ORTHO05D003741 2.2e-07 60.1 75 38.7
Cc11_g06570 Coffea canephora HOM05D000742 ORTHO05D000924 2.9e-07 59.7 201 26.9
MD09G1049200 Malus domestica HOM05D000742 ORTHO05D003741 2.9e-07 59.7 69 40.6
SalBow2G0828 Salvia bowleyana HOM05D000742 ORTHO05D003741 2.9e-07 59.7 239 25.1
AUR62039828 Chenopodium quinoa HOM05D000742 ORTHO05D003741 3.7e-07 59.3 69 40.6
ECA246G4740 Erigeron canadensis HOM05D000742 ORTHO05D003741 3.7e-07 59.3 68 42.6
FAN14G4383 Fragaria x ananassa HOM05D000742 ORTHO05D003741 3.7e-07 59.3 69 40.6
TAR622G1301 Trochodendron aralioides HOM05D000742 ORTHO05D003741 3.7e-07 59.3 75 41.3
HPP92_027150 Vanilla planifolia HOM05D000742 ORTHO05D003741 3.7e-07 59.3 231 22.5
Aqoxy3G00703 Aquilegia oxysepala HOM05D000742 ORTHO05D003741 4.9e-07 58.9 69 42.0
Lsat_1_v5_gn_8_52100 Lactuca sativa HOM05D000742 ORTHO05D003741 4.9e-07 58.9 138 33.3
Medtr7g010100 Medicago truncatula HOM05D000742 ORTHO05D003741 4.9e-07 58.9 61 42.6
QL02p081468 Quercus lobata HOM05D000742 ORTHO05D003741 4.9e-07 58.9 69 42.0
Cfa007532 Carpinus fangiana HOM05D000742 ORTHO05D003741 6.4e-07 58.5 69 40.6
Potri.017G081400 Populus trichocarpa HOM05D000742 ORTHO05D003741 6.4e-07 58.5 118 30.5
unitig_27.g25163 Utricularia gibba HOM05D000742 ORTHO05D000924 6.4e-07 58.5 109 30.3
HPP92_016459 Vanilla planifolia HOM05D000742 ORTHO05D003741 6.4e-07 58.5 240 22.1
Zm00001eb068910 Zea mays HOM05D000742 ORTHO05D003741 6.4e-07 58.5 194 25.3
Atru.chr11.818 Acer truncatum HOM05D000742 ORTHO05D000924 8.4e-07 58.2 219 25.6
Haze_14556 Corylus avellana HOM05D000742 ORTHO05D003741 8.4e-07 58.2 69 40.6
Lj7A397T30 Lonicera japonica HOM05D000742 ORTHO05D003741 8.4e-07 58.2 69 39.1
MD17G1049200 Malus domestica HOM05D000742 ORTHO05D003741 8.4e-07 58.2 69 40.6
Nitab4.5_0002151g0060 Nicotiana tabacum HOM05D000742 ORTHO05D003741 8.4e-07 58.2 75 37.3
Nitab4.5_0003586g0010 Nicotiana tabacum HOM05D000742 ORTHO05D003741 8.4e-07 58.2 75 37.3
RcHm_v2.0_Chr2g0168821 Rosa chinensis HOM05D000742 ORTHO05D003741 8.4e-07 58.2 69 40.6
AL1G26220 Arabidopsis lyrata HOM05D000742 ORTHO05D003741 1.1e-06 57.8 232 25.9
MELO3C021980.2 Cucumis melo HOM05D000742 ORTHO05D003741 1.1e-06 57.8 60 45.0
CsaV3_5G037940 Cucumis sativus L. HOM05D000742 ORTHO05D003741 1.1e-06 57.8 60 45.0
Eucgr.J01216 Eucalyptus grandis HOM05D000742 ORTHO05D003741 1.1e-06 57.8 69 40.6
HanXRQChr17g0566011 Helianthus annuus HOM05D000742 ORTHO05D000924 1.1e-06 57.8 205 24.9
MBI02_g33380_MAGBIO Magnolia biondii HOM05D000742 ORTHO05D003741 1.1e-06 57.8 160 28.1
Oeu000619.1 Olea europaea HOM05D000742 ORTHO05D003741 1.1e-06 57.8 240 23.8
Potri.017G081500 Populus trichocarpa HOM05D000742 ORTHO05D003741 1.1e-06 57.8 96 33.3
Aa31LG5G12400 Aethionema arabicum HOM05D000742 ORTHO05D003741 1.4e-06 57.4 59 47.5
CANSAT56G0957 Cannabis sativa HOM05D000742 ORTHO05D000924 1.4e-06 57.4 237 25.7
Duzib264G0090 Durio zibethinus HOM05D000742 ORTHO05D003741 1.4e-06 57.4 149 28.2
THA.LOC104825573 Tarenaya hassleriana HOM05D000742 ORTHO05D000924 1.4e-06 57.4 170 27.1
Thecc.04G078900 Theobroma cacao HOM05D000742 ORTHO05D003741 1.4e-06 57.4 69 36.2
CANSAT64G2751 Cannabis sativa HOM05D000742 ORTHO05D003741 1.9e-06 57.0 60 46.7
CANSAT64G2868 Cannabis sativa HOM05D000742 ORTHO05D003741 1.9e-06 57.0 60 46.7
Ciclev10032573m.g Citrus clementina HOM05D000742 ORTHO05D003741 1.9e-06 57.0 240 23.8
Peaxi162Scf00777g00048 Petunia axillaris HOM05D000742 ORTHO05D003741 1.9e-06 57.0 120 30.8
Sed0004959 Sechium edule HOM05D000742 ORTHO05D003741 1.9e-06 57.0 242 24.4
Sopen05g003160 Solanum pennellii HOM05D000742 ORTHO05D003741 1.9e-06 57.0 240 25.4
MSTRG.13410 Avicennia marina HOM05D000742 ORTHO05D003741 2.4e-06 56.6 76 39.5
Os04g0594400 Oryza sativa ssp. japonica HOM05D000742 ORTHO05D000924 2.4e-06 56.6 224 24.1
Pp3c22_22390 Physcomitrium patens HOM05D000742 ORTHO05D000924 2.4e-06 56.6 90 37.8
Lj4g0001118 Lotus japonicus HOM05D000742 ORTHO05D000924 3.2e-06 56.2 229 24.5
PSO017G1771 Papaver somniferum HOM05D000742 ORTHO05D003741 3.2e-06 56.2 71 36.6
Peaxi162Scf00503g00418 Petunia axillaris HOM05D000742 ORTHO05D003741 3.2e-06 56.2 75 36.0
RcHm_v2.0_Chr4g0440121 Rosa chinensis HOM05D000742 ORTHO05D003741 3.2e-06 56.2 75 38.7
C08p16600 Brassica napus HOM05D000742 ORTHO05D003741 4.1e-06 55.8 68 42.6
CDE04G2573 Ceratophyllum demersum HOM05D000742 ORTHO05D000729 4.1e-06 55.8 77 35.1
MD13G1017900 Malus domestica HOM05D000742 ORTHO05D000924 4.1e-06 55.8 222 24.3
PSO478G3055 Papaver somniferum HOM05D000742 ORTHO05D003741 4.1e-06 55.8 71 36.6
Pp3c19_9760 Physcomitrium patens HOM05D000742 ORTHO05D000924 4.1e-06 55.8 135 30.4
Sp3g31480 Schrenkiella parvula HOM05D000742 ORTHO05D000924 4.1e-06 55.8 72 38.9
BcaB03g15146 Brassica carinata HOM05D000742 ORTHO05D000924 5.4e-06 55.5 201 23.9
A07p34480 Brassica napus HOM05D003836 ORTHO05D004556 5.4e-06 55.5 202 26.2
BolC6t39224H Brassica oleracea HOM05D000742 ORTHO05D000924 5.4e-06 55.5 202 25.2
CARHR014770 Cardamine hirsuta HOM05D000742 ORTHO05D003741 5.4e-06 55.5 68 41.2
ClCG09G016890 Citrullus lanatus HOM05D000742 ORTHO05D000924 5.4e-06 55.5 86 37.2
FvH4_4g31610 Fragaria vesca HOM05D000742 ORTHO05D003741 5.4e-06 55.5 68 39.7
FAN07G1008 Fragaria x ananassa HOM05D000742 ORTHO05D003741 5.4e-06 55.5 68 39.7
FAN12G2841 Fragaria x ananassa HOM05D000742 ORTHO05D003741 5.4e-06 55.5 68 39.7
FAN17G1148 Fragaria x ananassa HOM05D000742 ORTHO05D003741 5.4e-06 55.5 68 39.7
FAN22G1453 Fragaria x ananassa HOM05D000742 ORTHO05D003741 5.4e-06 55.5 68 39.7
Nitab4.5_0000274g0110 Nicotiana tabacum HOM05D000742 ORTHO05D003741 5.4e-06 55.5 57 43.9
Pp3c23_20750 Physcomitrium patens HOM05D000742 ORTHO05D000924 5.4e-06 55.5 206 26.2
QL03p038232 Quercus lobata HOM05D000742 ORTHO05D000924 5.4e-06 55.5 200 27.5
PGSC0003DMG400025609 Solanum tuberosum HOM05D000742 ORTHO05D003741 5.4e-06 55.5 242 25.6
Actinidia38431 Actinidia chinensis HOM05D000742 ORTHO05D000924 7.1e-06 55.1 231 23.4
BcaC07g38733 Brassica carinata HOM05D000742 ORTHO05D003741 7.1e-06 55.1 68 41.2
A08p32010 Brassica napus HOM05D000742 ORTHO05D003741 7.1e-06 55.1 68 41.2
BolC8t49288H Brassica oleracea HOM05D000742 ORTHO05D003741 7.1e-06 55.1 68 41.2
BraA08t35122Z Brassica rapa HOM05D000742 ORTHO05D003741 7.1e-06 55.1 68 41.2
Cpa.g.sc161.3 Carica papaya HOM05D000742 ORTHO05D000924 7.1e-06 55.1 72 40.3
CiPaw.03G028600 Carya illinoinensis HOM05D000742 ORTHO05D003741 7.1e-06 55.1 60 45.0
TWI32G0316 Tripterygium wilfordii HOM05D000742 ORTHO05D000924 7.1e-06 55.1 140 29.3
GSVIVG01020030001 Vitis vinifera HOM05D000742 ORTHO05D003741 7.1e-06 55.1 76 36.8
BcaB03g13103 Brassica carinata HOM05D000742 ORTHO05D003741 9.2e-06 54.7 68 41.2
CANSAT78G2418 Cannabis sativa HOM05D000742 ORTHO05D000924 9.2e-06 54.7 217 25.3
HanXRQChr16g0527261 Helianthus annuus HOM05D000742 ORTHO05D000924 9.2e-06 54.7 205 23.4
SalBow8G1497 Salvia bowleyana HOM05D000742 ORTHO05D003741 9.2e-06 54.7 239 23.8
Sed0026338 Sechium edule HOM05D000742 ORTHO05D003741 9.2e-06 54.7 60 41.7
TWI18G1073 Tripterygium wilfordii HOM05D000742 ORTHO05D003741 9.2e-06 54.7 240 23.3
Zm00001eb390160 Zea mays HOM05D000742 ORTHO05D000924 9.2e-06 54.7 172 28.5


User provided reference genes

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