Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G0954 Fragaria x ananassa HOM05D006028 ORTHO05D007784 2.0e-206 722.2 367 100.0
FvH4_4g11350 Fragaria vesca HOM05D006028 ORTHO05D007784 1.3e-202 709.5 367 98.6
RcHm_v2.0_Chr6g0273571 Rosa chinensis HOM05D006028 ORTHO05D007784 1.7e-170 602.8 375 84.3
Prupe.3G142900 Prunus persica HOM05D006028 ORTHO05D007784 1.2e-150 537.0 379 73.6
QL02p051229 Quercus lobata HOM05D006028 ORTHO05D007784 5.8e-134 481.5 375 67.5
Cfa007919 Carpinus fangiana HOM05D006028 ORTHO05D007784 3.5e-131 472.2 376 66.5
Haze_14158 Corylus avellana HOM05D006028 ORTHO05D007784 1.1e-129 467.2 383 65.5
CANSAT78G1220 Cannabis sativa HOM05D006028 ORTHO05D007784 5.3e-127 458.4 376 65.2
Thecc.04G133100 Theobroma cacao HOM05D006028 ORTHO05D007784 4.5e-126 455.3 378 63.8
CiPaw.03G061900 Carya illinoinensis HOM05D006028 ORTHO05D007784 1.9e-124 449.9 376 64.4
TWI53G1478 Tripterygium wilfordii HOM05D006028 ORTHO05D007784 9.3e-124 447.6 377 62.1
Potri.004G099000 Populus trichocarpa HOM05D006028 ORTHO05D007784 5.1e-122 441.8 380 62.1
Ciclev10011993m.g Citrus clementina HOM05D006028 ORTHO05D007784 4.3e-121 438.7 372 61.3
Gohir.A12G053400 Gossypium hirsutum HOM05D006028 ORTHO05D007784 4.8e-120 435.3 378 63.0
Gohir.D12G052100 Gossypium hirsutum HOM05D006028 ORTHO05D007784 1.8e-119 433.3 383 62.4
Gorai.008G055200 Gossypium raimondii HOM05D006028 ORTHO05D007784 3.1e-119 432.6 383 62.4
TAR629G2682 Trochodendron aralioides HOM05D006028 ORTHO05D007784 4.0e-119 432.2 374 61.8
Manes.02G069100 Manihot esculenta HOM05D006028 ORTHO05D007784 1.5e-118 430.3 376 60.4
MD00G1149900 Malus domestica HOM05D006028 ORTHO05D007784 7.6e-118 427.9 324 70.1
CSS0040274 Camellia sinensis var. sinensis HOM05D006028 ORTHO05D007784 3.8e-117 425.6 376 59.0
CSS0038458 Camellia sinensis var. sinensis HOM05D006028 ORTHO05D007784 2.5e-116 422.9 376 58.8
CsaV3_3G020280 Cucumis sativus L. HOM05D006028 ORTHO05D007784 4.2e-116 422.2 376 58.2
GSVIVG01031016001 Vitis vinifera HOM05D006028 ORTHO05D007784 7.9e-115 417.9 376 59.6
Aqoxy4G02499 Aquilegia oxysepala HOM05D006028 ORTHO05D007784 1.3e-114 417.2 371 59.6
Atru.chr1.1685 Acer truncatum HOM05D006028 ORTHO05D007784 1.8e-114 416.8 372 58.6
COL.COLO4_09340 Corchorus olitorius HOM05D006028 ORTHO05D007784 1.8e-114 416.8 378 59.8
MELO3C023751.2 Cucumis melo HOM05D006028 ORTHO05D007784 3.0e-114 416.0 377 58.1
Hma1.2p1_1109F.1_g258060 Hydrangea macrophylla HOM05D006028 ORTHO05D007784 3.0e-114 416.0 377 58.1
Rhsim10G0067700 Rhododendron simsii HOM05D006028 ORTHO05D007784 3.3e-113 412.5 376 58.2
Sopen02g030790 Solanum pennellii HOM05D006028 ORTHO05D007784 1.4e-111 407.1 376 57.2
Glyma.02G226700 Glycine max HOM05D006028 ORTHO05D007784 4.1e-111 405.6 377 59.4
PGSC0003DMG400026405 Solanum tuberosum HOM05D006028 ORTHO05D007784 6.9e-111 404.8 376 56.4
Actinidia15886 Actinidia chinensis HOM05D006028 ORTHO05D007784 1.2e-110 404.1 381 57.5
Glyma.14G193600 Glycine max HOM05D006028 ORTHO05D007784 4.5e-110 402.1 376 58.2
PGR004G1556 Punica granatum HOM05D006028 ORTHO05D007784 4.5e-110 402.1 376 57.7
Cc07_g08770 Coffea canephora HOM05D006028 ORTHO05D007784 1.0e-109 401.0 378 55.6
Duzib138G1322 Durio zibethinus HOM05D006028 ORTHO05D007784 2.2e-109 399.8 378 58.5
Nitab4.5_0004416g0010 Nicotiana tabacum HOM05D006028 ORTHO05D007784 5.0e-109 398.7 376 56.1
Nitab4.5_0000912g0170 Nicotiana tabacum HOM05D006028 ORTHO05D007784 6.5e-109 398.3 376 55.6
CAN.G625.27 Capsicum annuum HOM05D006028 ORTHO05D007784 1.1e-108 397.5 376 55.6
MSTRG.17981 Avicennia marina HOM05D006028 ORTHO05D007784 1.4e-108 397.1 381 55.9
Lj2A441T56 Lonicera japonica HOM05D006028 ORTHO05D007784 1.4e-108 397.1 377 57.0
Oeu008432.1 Olea europaea HOM05D006028 ORTHO05D007784 3.2e-108 396.0 376 56.6
ClCG05G012120 Citrullus lanatus HOM05D006028 ORTHO05D007784 5.5e-108 395.2 376 57.2
Phvul.008G261300 Phaseolus vulgaris HOM05D006028 ORTHO05D007784 2.1e-107 393.3 376 57.4
Dinv34819 Davidia involucrata HOM05D006028 ORTHO05D007784 2.7e-107 392.9 365 59.2
ECA246G2307 Erigeron canadensis HOM05D006028 ORTHO05D007784 1.3e-106 390.6 376 54.8
VMungo0647G1142 Vigna mungo HOM05D006028 ORTHO05D007784 3.9e-106 389.0 376 57.4
PSO478G1932 Papaver somniferum HOM05D006028 ORTHO05D007784 5.1e-106 388.7 371 56.6
TPR.G23017 Trifolium pratense HOM05D006028 ORTHO05D007784 1.5e-105 387.1 376 57.4
PSO017G5051 Papaver somniferum HOM05D006028 ORTHO05D007784 2.5e-105 386.3 371 56.1
AUR62023297 Chenopodium quinoa HOM05D006028 ORTHO05D007784 1.8e-103 380.2 379 54.9
Migut.H00221 Erythranthe guttata HOM05D006028 ORTHO05D007784 3.1e-103 379.4 377 54.1
LjContig00155g0021894 Lotus japonicus HOM05D006028 ORTHO05D007784 1.2e-102 377.5 382 56.5
Lalb_Chr10g0103311 Lupinus albus HOM05D006028 ORTHO05D007784 1.3e-101 374.0 377 56.2
Medtr5g070860 Medicago truncatula HOM05D006028 ORTHO05D007784 2.2e-101 373.2 377 55.7
SGA_v2.0_scaffold33G13509 Striga asiatica HOM05D006028 ORTHO05D007784 2.2e-101 373.2 378 53.4
arahy.Tifrunner.gnm1.ann1.I9N3Y5 Arachis hypogaea HOM05D006028 ORTHO05D007784 7.2e-100 368.2 365 56.2
Sabra04G0080900 Salix brachista HOM05D006028 ORTHO05D007784 7.2e-100 368.2 325 60.0
SalBow3G3202 Salvia bowleyana HOM05D006028 ORTHO05D007784 9.4e-100 367.9 398 53.3
Nn3g17886 Nelumbo nucifera HOM05D006028 ORTHO05D007784 2.7e-99 366.3 367 55.0
arahy.Tifrunner.gnm1.ann1.QNRR2Z Arachis hypogaea HOM05D006028 ORTHO05D007784 6.1e-99 365.2 365 56.2
Eucgr.F02499 Eucalyptus grandis HOM05D006028 ORTHO05D007784 7.9e-99 364.8 332 56.9
Hund13711 Selenicereus undatus HOM05D006028 ORTHO05D007784 1.8e-98 363.6 376 53.7
EL10Ac2g04560 Beta vulgaris HOM05D006028 ORTHO05D007784 3.0e-98 362.8 375 53.6
HanXRQChr12g0375811 Helianthus annuus HOM05D006028 ORTHO05D007784 5.1e-98 362.1 376 52.9
AT2G18410 Arabidopsis thaliana HOM05D006028 ORTHO05D007784 6.7e-98 361.7 374 53.7
Lsat_1_v5_gn_3_79681 Lactuca sativa HOM05D006028 ORTHO05D007784 1.5e-97 360.5 377 53.8
HPP92_018993 Vanilla planifolia HOM05D006028 ORTHO05D007784 1.5e-97 360.5 377 52.3
AUR62009005 Chenopodium quinoa HOM05D006028 ORTHO05D007784 3.3e-97 359.4 398 51.3
ATR1125G043 Amborella trichopoda HOM05D006028 ORTHO05D007784 1.7e-96 357.1 389 49.4
Carub.0003s3256 Capsella rubella HOM05D006028 ORTHO05D007784 1.7e-96 357.1 374 53.2
Sp3g31820 Schrenkiella parvula HOM05D006028 ORTHO05D007784 1.1e-95 354.4 374 53.2
SpUn0030_0010 Schrenkiella parvula HOM05D006028 ORTHO05D007784 1.1e-95 354.4 374 53.2
AL3G51690 Arabidopsis lyrata HOM05D006028 ORTHO05D007784 1.8e-95 353.6 375 53.3
Thhalv10022737m.g Eutrema salsugineum HOM05D006028 ORTHO05D007784 3.1e-95 352.8 371 52.8
BcaC06g36407 Brassica carinata HOM05D006028 ORTHO05D007784 5.3e-95 352.1 374 51.9
vmacro05550 Vaccinium macrocarpon HOM05D006028 ORTHO05D007784 5.3e-95 352.1 377 52.8
Aa31LG8G15620 Aethionema arabicum HOM05D006028 ORTHO05D007784 2.0e-94 350.1 373 51.7
A07p02330 Brassica napus HOM05D006028 ORTHO05D007784 1.0e-93 347.8 379 51.7
THA.LOC104820944 Tarenaya hassleriana HOM05D006028 ORTHO05D007784 1.0e-93 347.8 374 52.4
BraA07t28024Z Brassica rapa HOM05D006028 ORTHO05D007784 5.0e-93 345.5 379 51.2
BolC7t40839H Brassica oleracea HOM05D006028 ORTHO05D007784 8.5e-93 344.7 378 51.1
C07p04450 Brassica napus HOM05D006028 ORTHO05D007784 1.4e-92 344.0 378 51.1
Ah.16g101740 Amaranthus hybridus HOM05D006028 ORTHO05D007784 2.5e-92 343.2 376 51.9
Peaxi162Scf00394g00620 Petunia axillaris HOM05D006028 ORTHO05D007784 5.7e-89 332.0 370 51.4
Os03g0201700 Oryza sativa ssp. japonica HOM05D006028 ORTHO05D007784 1.3e-88 330.9 384 46.6
BcaB03g16641 Brassica carinata HOM05D006028 ORTHO05D007784 2.8e-88 329.7 398 48.2
CARHR109010 Cardamine hirsuta HOM05D006028 ORTHO05D007784 2.8e-88 329.7 375 49.9
Zm00001eb007750 Zea mays HOM05D006028 ORTHO05D007784 5.9e-86 322.0 385 47.0
Sed0006429 Sechium edule HOM05D006028 ORTHO05D007784 2.1e-83 313.5 283 59.0
CDE05G1052 Ceratophyllum demersum HOM05D006028 ORTHO05D007784 1.8e-79 300.4 375 45.9
Haze_14159 Corylus avellana HOM05D006028 ORTHO05D007784 3.7e-72 276.2 225 66.2
RcHm_v2.0_Chr1g0332721 Rosa chinensis HOM05D006028 ORTHO05D007784 1.2e-67 261.2 180 76.7
Pp3c5_13580 Physcomitrium patens HOM05D006028 ORTHO05D007784 2.0e-65 253.8 387 40.1
Ca_05599_v3 Cicer arietinum L. HOM05D006028 ORTHO05D007784 2.6e-65 253.4 318 48.7
Sc10g0001120 Simmondsia chinensis HOM05D006028 ORTHO05D007784 9.8e-65 251.5 256 54.3
Psat0s2922g0040 Pisum sativum HOM05D006028 ORTHO05D007784 3.7e-64 249.6 257 52.9
Mapoly0156s0014 Marchantia polymorpha HOM05D006028 ORTHO05D007784 4.7e-59 232.6 383 37.1
SMO351G0506 Selaginella moellendorffii HOM05D006028 ORTHO05D007784 5.2e-58 229.2 374 38.0
FAN17G0046 Fragaria x ananassa HOM05D006028 ORTHO05D007784 1.2e-57 228.0 182 70.3
QL02p051191 Quercus lobata HOM05D006028 ORTHO05D007784 1.8e-55 220.7 170 67.6
Hma1.2p1_1109F.1_g258050 Hydrangea macrophylla HOM05D006028 ORTHO05D007784 1.2e-54 218.0 198 57.6
Solyc02g086100.4 Solanum lycopersicum HOM05D006028 ORTHO05D007784 4.4e-49 199.5 168 61.3
SMO009G0016 Selaginella moellendorffii HOM05D006028 ORTHO05D007784 9.8e-49 198.4 371 35.0
Hma1.2p1_1109F.1_g258070 Hydrangea macrophylla HOM05D006028 ORTHO05D007784 2.0e-46 190.7 169 58.6
SHI29124 Sapria himalayana HOM05D006028 ORTHO05D007784 1.0e-45 188.3 268 42.5
SEGI_33346 Sequoiadendron giganteum HOM05D006028 ORTHO05D007784 5.6e-44 182.6 233 45.9
Potri.017G115566 Populus trichocarpa HOM05D006028 ORTHO05D007784 4.0e-42 176.4 161 55.3
unitig_748.g7283 Utricularia gibba HOM05D006028 ORTHO05D007784 8.6e-37 158.7 368 33.2
Sabra17G0095800 Salix brachista HOM05D006028 ORTHO05D007784 2.7e-30 137.1 159 53.5
Gorai.007G000700 Gossypium raimondii HOM05D006028 ORTHO05D007784 1.7e-29 134.4 169 47.3
Gohir.A09G249300 Gossypium hirsutum HOM05D006028 ORTHO05D007784 1.8e-26 124.4 178 45.5
Gohir.1Z049310 Gossypium hirsutum HOM05D006028 ORTHO05D007784 6.9e-26 122.5 178 45.5
Cpa.g.sc282.2 Carica papaya HOM05D006028 ORTHO05D007784 1.1e-23 115.2 158 43.0
AagrBONN_evm.TU.Sc2ySwM_368.1688 Anthoceros agrestis HOM05D006028 ORTHO05D007784 7.1e-23 112.5 142 49.3
Gohir.A06G000200 Gossypium hirsutum HOM05D006028 ORTHO05D007784 1.2e-14 85.1 99 44.4
Gohir.A12G000400 Gossypium hirsutum HOM05D006028 ORTHO05D007784 1.8e-13 81.3 92 46.7
SEGI_36511 Sequoiadendron giganteum HOM05D006028 ORTHO05D007784 3.0e-13 80.5 80 50.0
AagrBONN_evm.TU.Sc2ySwM_368.1687 Anthoceros agrestis HOM05D006028 ORTHO05D007784 6.7e-13 79.3 159 31.4
QL02p051195 Quercus lobata HOM05D006028 ORTHO05D007784 1.6e-11 74.7 73 52.1
FvH4_4g11432 Fragaria vesca HOM05D006028 ORTHO05D198168 6.4e-08 62.8 36 80.6
Nitab4.5_0014016g0010 Nicotiana tabacum HOM05D006028 ORTHO05D007784 4.2e-07 60.1 82 39.0


User provided reference genes

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