Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G0809 Fragaria x ananassa HOM05D003727 ORTHO05D004731 2.6e-112 408.7 199 100.0
FvH4_4g21480 Fragaria vesca HOM05D003727 ORTHO05D004731 1.6e-109 399.4 198 98.0
FAN12G0484 Fragaria x ananassa HOM05D003727 ORTHO05D004731 1.6e-109 399.4 198 98.0
FAN17G0291 Fragaria x ananassa HOM05D003727 ORTHO05D004731 1.6e-109 399.4 198 98.0
RcHm_v2.0_Chr4g0427421 Rosa chinensis HOM05D003727 ORTHO05D004731 1.4e-105 386.3 198 94.9
Prupe.1G105800 Prunus persica HOM05D003727 ORTHO05D004731 4.6e-101 371.3 198 90.4
Duzib151G0200 Durio zibethinus HOM05D003727 ORTHO05D004731 3.0e-100 368.6 198 89.4
COL.COLO4_34520 Corchorus olitorius HOM05D003727 ORTHO05D004731 5.1e-100 367.9 198 89.4
Thecc.04G312500 Theobroma cacao HOM05D003727 ORTHO05D004731 6.6e-100 367.5 198 88.9
CiPaw.01G129700 Carya illinoinensis HOM05D003727 ORTHO05D004731 3.3e-99 365.2 198 89.9
Gohir.A01G036300 Gossypium hirsutum HOM05D003727 ORTHO05D004731 9.6e-99 363.6 198 89.4
CiPaw.02G069500 Carya illinoinensis HOM05D003727 ORTHO05D004731 2.8e-98 362.1 198 87.4
QL06p014168 Quercus lobata HOM05D003727 ORTHO05D004731 2.8e-98 362.1 200 87.5
Gohir.D01G023600 Gossypium hirsutum HOM05D003727 ORTHO05D004731 4.8e-98 361.3 198 88.4
Gorai.002G032100 Gossypium raimondii HOM05D003727 ORTHO05D004731 8.1e-98 360.5 198 88.4
MD13G1140800 Malus domestica HOM05D003727 ORTHO05D004731 1.1e-97 360.1 198 89.4
Manes.03G211600 Manihot esculenta HOM05D003727 ORTHO05D004731 1.4e-97 359.8 198 86.9
Potri.010G002000 Populus trichocarpa HOM05D003727 ORTHO05D004731 6.9e-97 357.5 198 86.4
Haze_00772 Corylus avellana HOM05D003727 ORTHO05D004731 9.0e-97 357.1 198 87.4
Sabra10G0001600 Salix brachista HOM05D003727 ORTHO05D004731 9.0e-97 357.1 198 86.9
TWI73G0221 Tripterygium wilfordii HOM05D003727 ORTHO05D004731 1.5e-96 356.3 198 86.4
GSVIVG01017684001 Vitis vinifera HOM05D003727 ORTHO05D004731 1.5e-96 356.3 198 86.9
Cfa015726 Carpinus fangiana HOM05D003727 ORTHO05D004731 2.6e-96 355.5 198 86.4
Glyma.09G079000 Glycine max HOM05D003727 ORTHO05D004731 3.8e-95 351.7 198 84.8
THA.LOC104827107 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 3.8e-95 351.7 198 84.3
Ciclev10005215m.g Citrus clementina HOM05D003727 ORTHO05D004731 4.9e-95 351.3 198 85.4
Gohir.A10G176400 Gossypium hirsutum HOM05D003727 ORTHO05D004731 8.4e-95 350.5 198 85.4
VMungo1309G1883 Vigna mungo HOM05D003727 ORTHO05D004731 8.4e-95 350.5 198 85.9
arahy.Tifrunner.gnm1.ann1.EP383Y Arachis hypogaea HOM05D003727 ORTHO05D004731 1.1e-94 350.1 198 84.8
Eucgr.H04122 Eucalyptus grandis HOM05D003727 ORTHO05D004731 1.1e-94 350.1 198 83.8
Aa31LG5G17020 Aethionema arabicum HOM05D003727 ORTHO05D004731 1.9e-94 349.4 198 83.3
PGR004G0380 Punica granatum HOM05D003727 ORTHO05D004731 1.9e-94 349.4 212 81.1
Glyma.15G188500 Glycine max HOM05D003727 ORTHO05D004731 3.2e-94 348.6 198 85.4
Sp3g05430 Schrenkiella parvula HOM05D003727 ORTHO05D004731 3.2e-94 348.6 198 83.3
Gohir.D10G183100 Gossypium hirsutum HOM05D003727 ORTHO05D004731 4.2e-94 348.2 198 84.3
Gorai.011G205200 Gossypium raimondii HOM05D003727 ORTHO05D004731 4.2e-94 348.2 198 84.3
Lj6g0008986 Lotus japonicus HOM05D003727 ORTHO05D004731 5.4e-94 347.8 198 83.3
ClCG04G007480 Citrullus lanatus HOM05D003727 ORTHO05D004731 9.3e-94 347.1 199 84.9
Phvul.009G219900 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 9.3e-94 347.1 198 85.9
THA.LOC104818862 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 9.3e-94 347.1 198 81.8
Cpa.g.sc146.27 Carica papaya HOM05D003727 ORTHO05D004731 1.2e-93 346.7 198 85.4
CsaV3_4G025780 Cucumis sativus L. HOM05D003727 ORTHO05D004731 1.6e-93 346.3 199 84.4
Lalb_Chr23g0276061 Lupinus albus HOM05D003727 ORTHO05D004731 1.6e-93 346.3 198 84.3
Thhalv10020969m.g Eutrema salsugineum HOM05D003727 ORTHO05D004731 2.7e-93 345.5 198 82.8
MELO3C003205.2 Cucumis melo HOM05D003727 ORTHO05D004731 4.6e-93 344.7 199 84.4
Sed0005057 Sechium edule HOM05D003727 ORTHO05D004731 6.0e-93 344.4 199 84.4
Atru.chr4.3143 Acer truncatum HOM05D003727 ORTHO05D004731 7.9e-93 344.0 197 84.8
Nitab4.5_0001334g0060 Nicotiana tabacum HOM05D003727 ORTHO05D004731 3.9e-92 341.7 198 83.3
CANSAT78G0237 Cannabis sativa HOM05D003727 ORTHO05D004731 5.1e-92 341.3 195 85.6
MELO3C006749.2 Cucumis melo HOM05D003727 ORTHO05D004731 6.6e-92 340.9 198 81.8
THA.LOC104798546 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 6.6e-92 340.9 198 81.8
THA.LOC104802717 Tarenaya hassleriana HOM05D003727 ORTHO05D004731 6.6e-92 340.9 198 81.8
Nitab4.5_0004046g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 1.5e-91 339.7 198 82.8
MSTRG.21742 Avicennia marina HOM05D003727 ORTHO05D004731 1.9e-91 339.3 198 83.3
Actinidia00296 Actinidia chinensis HOM05D003727 ORTHO05D004731 2.5e-91 339.0 197 85.8
Actinidia18506 Actinidia chinensis HOM05D003727 ORTHO05D004731 2.5e-91 339.0 198 83.8
CsaV3_3G015500 Cucumis sativus L. HOM05D003727 ORTHO05D004731 2.5e-91 339.0 199 82.9
Rhsim04G0248100 Rhododendron simsii HOM05D003727 ORTHO05D004731 2.5e-91 339.0 198 84.3
DCAR_023405 Daucus carota HOM05D003727 ORTHO05D004731 4.3e-91 338.2 198 83.8
C03p42180 Brassica napus HOM05D003727 ORTHO05D004731 5.6e-91 337.8 198 83.3
BraA03t12649Z Brassica rapa HOM05D003727 ORTHO05D004731 5.6e-91 337.8 198 83.3
Solyc01g057210.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 9.6e-91 337.0 198 82.8
PGSC0003DMG400013068 Solanum tuberosum HOM05D003727 ORTHO05D004731 9.6e-91 337.0 198 82.8
A03p34710 Brassica napus HOM05D003727 ORTHO05D004731 2.1e-90 335.9 198 82.8
BolC3t16499H Brassica oleracea HOM05D003727 ORTHO05D004731 2.1e-90 335.9 198 82.8
Peaxi162Scf00126g01030 Petunia axillaris HOM05D003727 ORTHO05D004731 2.1e-90 335.9 198 82.8
AT3G06483 Arabidopsis thaliana HOM05D003727 ORTHO05D004731 3.6e-90 335.1 198 81.8
Carub.0003s0594 Capsella rubella HOM05D003727 ORTHO05D004731 3.6e-90 335.1 198 81.8
CAN.G179.19 Capsicum annuum HOM05D003727 ORTHO05D004731 3.6e-90 335.1 198 82.3
Dinv29512 Davidia involucrata HOM05D003727 ORTHO05D004731 4.8e-90 334.7 198 82.8
Sopen01g021750 Solanum pennellii HOM05D003727 ORTHO05D004731 4.8e-90 334.7 198 82.3
AUR62002558 Chenopodium quinoa HOM05D003727 ORTHO05D004731 6.2e-90 334.3 198 83.3
CARHR081010 Cardamine hirsuta HOM05D003727 ORTHO05D004731 8.1e-90 334.0 198 81.3
Sed0027316 Sechium edule HOM05D003727 ORTHO05D004731 1.1e-89 333.6 199 80.4
EL10Ac3g06260 Beta vulgaris HOM05D003727 ORTHO05D004731 1.8e-89 332.8 198 82.3
vmacro08010 Vaccinium macrocarpon HOM05D003727 ORTHO05D004731 1.8e-89 332.8 194 84.5
Lj3A840G128 Lonicera japonica HOM05D003727 ORTHO05D004731 2.4e-89 332.4 197 82.7
arahy.Tifrunner.gnm1.ann1.BN91E6 Arachis hypogaea HOM05D003727 ORTHO05D004731 5.3e-89 331.3 237 70.9
ClCG05G006850 Citrullus lanatus HOM05D003727 ORTHO05D004731 1.2e-88 330.1 199 82.4
Lalb_Chr11g0073551 Lupinus albus HOM05D003727 ORTHO05D004731 1.2e-88 330.1 198 81.3
Oeu022704.1 Olea europaea HOM05D003727 ORTHO05D004731 1.2e-88 330.1 198 82.3
Aqoxy7G02168 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 1.5e-88 329.7 198 82.8
Sc25g0002190 Simmondsia chinensis HOM05D003727 ORTHO05D004731 4.5e-88 328.2 198 81.8
Hma1.2p1_2234F.1_g317700 Hydrangea macrophylla HOM05D003727 ORTHO05D004731 5.8e-88 327.8 198 81.3
CSS0027704 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 7.6e-88 327.4 195 81.5
SalBow8G0722 Salvia bowleyana HOM05D003727 ORTHO05D004731 9.9e-88 327.0 188 84.0
Migut.N00003 Erythranthe guttata HOM05D003727 ORTHO05D004731 1.3e-87 326.6 193 81.9
Lsat_1_v5_gn_6_70560 Lactuca sativa HOM05D003727 ORTHO05D004731 2.2e-87 325.9 198 80.3
Medtr2g045490 Medicago truncatula HOM05D003727 ORTHO05D004731 2.2e-87 325.9 198 79.8
SGA_v2.0_scaffold64G22028 Striga asiatica HOM05D003727 ORTHO05D004731 3.8e-87 325.1 197 82.2
TPR.G39591 Trifolium pratense HOM05D003727 ORTHO05D004731 3.8e-87 325.1 198 80.8
BcaC05g29821 Brassica carinata HOM05D003727 ORTHO05D004731 4.9e-87 324.7 189 81.0
BcaC05g30021 Brassica carinata HOM05D003727 ORTHO05D004731 4.9e-87 324.7 189 81.0
A05p41540 Brassica napus HOM05D003727 ORTHO05D004731 4.9e-87 324.7 189 81.0
C05p60740 Brassica napus HOM05D003727 ORTHO05D004731 4.9e-87 324.7 189 81.0
BolC5t34734H Brassica oleracea HOM05D003727 ORTHO05D004731 4.9e-87 324.7 189 81.0
BraA05t22875Z Brassica rapa HOM05D003727 ORTHO05D004731 4.9e-87 324.7 189 81.0
Ca_07250_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 4.9e-87 324.7 193 80.8
Nitab4.5_0000895g0180 Nicotiana tabacum HOM05D003727 ORTHO05D004731 4.9e-87 324.7 198 80.3
Nitab4.5_0003998g0020 Nicotiana tabacum HOM05D003727 ORTHO05D004731 4.9e-87 324.7 198 80.3
Cc03_g00160 Coffea canephora HOM05D003727 ORTHO05D004731 8.4e-87 323.9 198 79.8
Aqoxy5G02791 Aquilegia oxysepala HOM05D003727 ORTHO05D004731 1.1e-86 323.6 199 82.9
TAR365G0780 Trochodendron aralioides HOM05D003727 ORTHO05D004731 2.4e-86 322.4 198 79.8
PSO357G0471 Papaver somniferum HOM05D003727 ORTHO05D004731 3.2e-86 322.0 198 80.8
Hund12253 Selenicereus undatus HOM05D003727 ORTHO05D004731 3.2e-86 322.0 198 75.8
MBI18_g09643_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 4.2e-86 321.6 198 79.3
PSO170G4280 Papaver somniferum HOM05D003727 ORTHO05D004731 4.2e-86 321.6 198 80.8
HanXRQChr05g0149271 Helianthus annuus HOM05D003727 ORTHO05D004731 9.3e-86 320.5 198 75.8
unitig_699.g19980 Utricularia gibba HOM05D003727 ORTHO05D004731 1.6e-85 319.7 198 78.3
Ca_02357_v3 Cicer arietinum L. HOM05D003727 ORTHO05D004731 2.1e-85 319.3 198 79.3
TPR.G15491 Trifolium pratense HOM05D003727 ORTHO05D004731 4.6e-85 318.2 193 79.8
HanXRQChr07g0194351 Helianthus annuus HOM05D003727 ORTHO05D004731 6.0e-85 317.8 199 76.9
Phvul.009G220000 Phaseolus vulgaris HOM05D003727 ORTHO05D004731 6.0e-85 317.8 187 82.9
Medtr7g024460 Medicago truncatula HOM05D003727 ORTHO05D004731 1.0e-84 317.0 193 79.3
Psat1g017520 Pisum sativum HOM05D003727 ORTHO05D004731 5.1e-84 314.7 198 78.3
SGA_v2.0_scaffold157G37388 Striga asiatica HOM05D003727 ORTHO05D004731 5.1e-84 314.7 197 80.2
CSS0023101 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 3.3e-83 312.0 202 76.7
Lj6A700T83 Lonicera japonica HOM05D003727 ORTHO05D004731 5.6e-83 311.2 198 77.8
Peaxi162Scf00668g00119 Petunia axillaris HOM05D003727 ORTHO05D004731 2.1e-82 309.3 198 77.3
Psat3g179960 Pisum sativum HOM05D003727 ORTHO05D004731 3.7e-82 308.5 193 79.3
SGA_v2.0_scaffold157G37383 Striga asiatica HOM05D003727 ORTHO05D004731 1.2e-80 303.5 242 67.4
CAN.G484.91 Capsicum annuum HOM05D003727 ORTHO05D004731 1.3e-79 300.1 198 74.7
GSVIVG01031319001 Vitis vinifera HOM05D003727 ORTHO05D004731 3.8e-79 298.5 198 75.3
VMungo1215G3329 Vigna mungo HOM05D003727 ORTHO05D004731 1.1e-78 297.0 199 74.9
Glyma.17G040500 Glycine max HOM05D003727 ORTHO05D004731 1.4e-78 296.6 187 77.0
SHI00051 Sapria himalayana HOM05D003727 ORTHO05D004731 5.5e-78 294.7 213 69.5
CDE02G0044 Ceratophyllum demersum HOM05D003727 ORTHO05D002799 6.0e-77 291.2 198 73.7
ATR0796G219 Amborella trichopoda HOM05D003727 ORTHO05D004731 1.3e-76 290.0 198 74.2
MBI19_g32733_MAGBIO Magnolia biondii HOM05D003727 ORTHO05D004731 1.8e-76 289.7 198 71.7
HPP92_001184 Vanilla planifolia HOM05D003727 ORTHO05D004731 2.3e-76 289.3 198 72.7
PGSC0003DMG400004685 Solanum tuberosum HOM05D003727 ORTHO05D004731 3.9e-76 288.5 197 73.1
Solyc12g098930.3 Solanum lycopersicum HOM05D003727 ORTHO05D004731 5.1e-76 288.1 198 73.2
Sopen12g033680 Solanum pennellii HOM05D003727 ORTHO05D004731 5.1e-76 288.1 198 73.2
PSO210G4254 Papaver somniferum HOM05D003727 ORTHO05D004731 1.9e-75 286.2 198 69.7
PSO761G0171 Papaver somniferum HOM05D003727 ORTHO05D004731 2.5e-75 285.8 198 69.7
Nn3g21906 Nelumbo nucifera HOM05D003727 ORTHO05D004731 5.7e-75 284.6 200 74.5
arahy.Tifrunner.gnm1.ann1.L2TMJG Arachis hypogaea HOM05D003727 ORTHO05D004731 2.1e-74 282.7 192 71.4
BcaC08g45280 Brassica carinata HOM05D003727 ORTHO05D004731 2.1e-74 282.7 171 81.9
ECA233G2414 Erigeron canadensis HOM05D003727 ORTHO05D004731 4.8e-74 281.6 198 71.2
arahy.Tifrunner.gnm1.ann1.E3SS24 Arachis hypogaea HOM05D003727 ORTHO05D004731 8.2e-74 280.8 192 71.9
Os07g0637300 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 6.9e-73 277.7 194 70.6
Zm00001eb328730 Zea mays HOM05D003727 ORTHO05D004731 3.4e-72 275.4 195 69.2
Zm00001eb394190 Zea mays HOM05D003727 ORTHO05D004731 5.5e-70 268.1 194 67.5
Zm00001eb018000 Zea mays HOM05D003727 ORTHO05D004731 7.9e-69 264.2 194 65.5
Os03g0370000 Oryza sativa ssp. japonica HOM05D003727 ORTHO05D004731 1.9e-67 259.6 192 66.1
AagrBONN_evm.TU.Sc2ySwM_362.1196 Anthoceros agrestis HOM05D003727 ORTHO05D004731 9.7e-67 257.3 198 61.1
SMO115G0066 Selaginella moellendorffii HOM05D003727 ORTHO05D004731 1.4e-65 253.4 198 59.6
CDE01G0062 Ceratophyllum demersum HOM05D003727 ORTHO05D004731 6.9e-65 251.1 198 62.1
unitig_8.g2888 Utricularia gibba HOM05D003727 ORTHO05D004731 6.9e-65 251.1 186 67.2
ECA246G0694 Erigeron canadensis HOM05D003727 ORTHO05D004731 9.1e-65 250.8 153 79.1
Mapoly0183s0013 Marchantia polymorpha HOM05D003727 ORTHO05D004731 1.3e-63 246.9 198 59.6
CBR_g238 Chara braunii HOM05D003727 ORTHO05D004731 1.9e-62 243.0 198 60.6
Pp3c9_2880 Physcomitrium patens HOM05D003727 ORTHO05D004731 1.9e-62 243.0 197 57.4
Pp3c15_8270 Physcomitrium patens HOM05D003727 ORTHO05D004731 2.5e-62 242.7 197 58.4
SEGI_06820 Sequoiadendron giganteum HOM05D003727 ORTHO05D004731 5.1e-60 235.0 193 59.6
Cre05.g241750 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D004731 1.0e-55 220.7 191 56.0
unitig_747.g21103 Utricularia gibba HOM05D003727 ORTHO05D004731 1.1e-54 217.2 155 70.3
SMO367G0119 Selaginella moellendorffii HOM05D003727 ORTHO05D004731 6.7e-52 208.0 196 49.0
Lj4g0016505 Lotus japonicus HOM05D003727 ORTHO05D004731 9.1e-49 197.6 201 54.2
TAR633G1110 Trochodendron aralioides HOM05D003727 ORTHO05D004731 2.0e-48 196.4 194 58.2
CSS0050306 Camellia sinensis var. sinensis HOM05D003727 ORTHO05D004731 3.8e-47 192.2 116 78.4
Oeu037626.1 Olea europaea HOM05D003727 ORTHO05D004731 3.8e-47 192.2 116 79.3
MCO15G342 Micromonas commoda HOM05D003727 ORTHO05D004731 1.5e-46 190.3 213 48.4
PRCOL_00006564 Prasinoderma coloniale HOM05D003727 ORTHO05D004731 3.0e-44 182.6 215 46.0
Nn4g25394 Nelumbo nucifera HOM05D003727 ORTHO05D004731 1.2e-43 180.6 111 78.4
AL3G17510 Arabidopsis lyrata HOM05D003727 ORTHO05D004731 3.5e-40 169.1 104 77.9
Cre06.g278451 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D004731 1.5e-38 163.7 197 43.1
Dinv18024 Davidia involucrata HOM05D003727 ORTHO05D004731 1.2e-35 154.1 86 84.9
Glyma.13G119800 Glycine max HOM05D003727 ORTHO05D004731 7.5e-35 151.4 98 73.5
DCAR_023404 Daucus carota HOM05D002877 ORTHO05D003248 1.7e-31 140.2 84 79.8
Zm00001eb392210 Zea mays HOM05D003727 ORTHO05D444991 1.2e-24 117.5 88 67.0
Zm00001eb400710 Zea mays HOM05D003727 ORTHO05D445430 1.2e-24 117.5 88 67.0
Zm00001eb394790 Zea mays HOM05D003727 ORTHO05D441672 2.9e-23 112.8 88 64.8
Cc00_g15630 Coffea canephora HOM05D003727 ORTHO05D004731 2.0e-16 90.1 86 57.0
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 6.6e-15 85.1 169 31.4
Cre06.g252300 Chlamydomonas reinhardtii HOM05D003727 ORTHO05D034196 3.6e-13 79.3 175 30.3
Cfa023761 Carpinus fangiana HOM05D003727 ORTHO05D034196 9.8e-11 71.2 165 27.9
vmacro06805 Vaccinium macrocarpon HOM05D003727 ORTHO05D426993 6.0e-08 62.0 59 57.6
vmacro06806 Vaccinium macrocarpon HOM05D003727 ORTHO05D426773 1.0e-07 61.2 56 53.6
Lsat_1_v5_gn_5_23680 Lactuca sativa HOM05D003727 ORTHO05D231959 1.1e-06 57.8 45 57.8


User provided reference genes

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