Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G0584 Fragaria x ananassa HOM05D006474 ORTHO05D007994 6.2e-249 863.6 421 100.0
FAN17G1111 Fragaria x ananassa HOM05D006474 ORTHO05D007994 1.2e-244 849.4 421 96.2
FvH4_4g06930 Fragaria vesca HOM05D006474 ORTHO05D007994 1.3e-241 839.3 421 97.6
FAN12G2823 Fragaria x ananassa HOM05D006474 ORTHO05D007994 2.4e-240 835.1 421 95.0
RcHm_v2.0_Chr4g0398871 Rosa chinensis HOM05D006474 ORTHO05D007994 5.5e-229 797.3 421 89.8
MD13G1241100 Malus domestica HOM05D006474 ORTHO05D007994 2.1e-196 689.1 405 77.8
Prupe.1G072500 Prunus persica HOM05D006474 ORTHO05D007994 3.9e-182 641.7 405 74.3
GSVIVG01029282001 Vitis vinifera HOM05D006474 ORTHO05D007994 1.2e-178 630.2 385 75.1
Potri.006G072800 Populus trichocarpa HOM05D006474 ORTHO05D007994 2.3e-174 615.9 366 77.0
Sabra06G0054200 Salix brachista HOM05D006474 ORTHO05D007994 1.1e-173 613.6 366 76.2
PGR142G0270 Punica granatum HOM05D006474 ORTHO05D007994 3.3e-173 612.1 408 70.6
CiPaw.07G199100 Carya illinoinensis HOM05D006474 ORTHO05D007994 3.6e-172 608.6 367 74.1
QL02p064597 Quercus lobata HOM05D006474 ORTHO05D007994 1.1e-171 607.1 368 75.5
Manes.06G017600 Manihot esculenta HOM05D006474 ORTHO05D007994 1.4e-171 606.7 365 75.6
arahy.Tifrunner.gnm1.ann1.HVXZ0P Arachis hypogaea HOM05D006474 ORTHO05D007994 2.3e-171 605.9 370 73.2
Cpa.g.sc115.63 Carica papaya HOM05D006474 ORTHO05D007994 6.8e-171 604.4 374 73.0
Thecc.04G204000 Theobroma cacao HOM05D006474 ORTHO05D007994 8.9e-171 604.0 381 73.5
TAR383G1087 Trochodendron aralioides HOM05D006474 ORTHO05D007994 1.5e-170 603.2 414 68.6
Aqoxy7G02891 Aquilegia oxysepala HOM05D006474 ORTHO05D007994 3.4e-170 602.1 365 75.1
HanXRQChr06g0181391 Helianthus annuus HOM05D006474 ORTHO05D007994 7.5e-170 600.9 396 68.2
Nitab4.5_0004916g0010 Nicotiana tabacum HOM05D006474 ORTHO05D007994 7.5e-170 600.9 367 74.4
Actinidia38505 Actinidia chinensis HOM05D006474 ORTHO05D007994 2.2e-169 599.4 406 69.5
Ca_21263_v3 Cicer arietinum L. HOM05D006474 ORTHO05D007994 3.7e-169 598.6 411 67.9
Lalb_Chr07g0180731 Lupinus albus HOM05D006474 ORTHO05D007994 3.7e-169 598.6 389 70.7
Eucgr.C00087 Eucalyptus grandis HOM05D006474 ORTHO05D007994 4.9e-169 598.2 394 69.3
Glyma.17G057700 Glycine max HOM05D006474 ORTHO05D007994 4.9e-169 598.2 367 73.3
Sc14g0003050 Simmondsia chinensis HOM05D006474 ORTHO05D007994 4.1e-168 595.1 405 68.4
Haze_22046 Corylus avellana HOM05D006474 ORTHO05D007994 1.2e-167 593.6 439 64.7
Cc01_g11810 Coffea canephora HOM05D006474 ORTHO05D007994 1.6e-167 593.2 382 71.7
PGSC0003DMG400019888 Solanum tuberosum HOM05D006474 ORTHO05D007994 2.1e-167 592.8 367 73.0
MELO3C009992.2 Cucumis melo HOM05D006474 ORTHO05D007994 2.7e-167 592.4 388 70.4
Nitab4.5_0000028g0400 Nicotiana tabacum HOM05D006474 ORTHO05D007994 4.6e-167 591.7 368 73.6
DCAR_020143 Daucus carota HOM05D006474 ORTHO05D007994 6.0e-167 591.3 392 67.3
Gohir.A05G408600 Gossypium hirsutum HOM05D006474 ORTHO05D007994 6.0e-167 591.3 367 73.0
Medtr4g127130 Medicago truncatula HOM05D006474 ORTHO05D007994 1.3e-166 590.1 394 69.5
Sopen07g004200 Solanum pennellii HOM05D006474 ORTHO05D007994 1.7e-166 589.7 367 72.8
Gorai.012G008200 Gossypium raimondii HOM05D006474 ORTHO05D007994 3.0e-166 589.0 372 72.3
Lj4g0020492 Lotus japonicus HOM05D006474 ORTHO05D007994 6.6e-166 587.8 364 72.3
COL.COLO4_37571 Corchorus olitorius HOM05D006474 ORTHO05D007994 1.5e-165 586.6 364 73.6
CsaV3_1G043980 Cucumis sativus L. HOM05D006474 ORTHO05D007994 1.5e-165 586.6 387 70.0
ClCG03G011950 Citrullus lanatus HOM05D006474 ORTHO05D007994 3.3e-165 585.5 388 68.8
Solyc07g008310.3 Solanum lycopersicum HOM05D006474 ORTHO05D007994 7.3e-165 584.3 367 71.9
TPR.G5392 Trifolium pratense HOM05D006474 ORTHO05D007994 9.5e-165 583.9 393 69.0
EL10Ac8g19287 Beta vulgaris HOM05D006474 ORTHO05D007994 2.1e-164 582.8 361 71.2
TWI32G0724 Tripterygium wilfordii HOM05D006474 ORTHO05D007994 4.7e-164 581.6 370 70.8
Peaxi162Scf00046g00533 Petunia axillaris HOM05D006474 ORTHO05D007994 1.8e-163 579.7 363 72.5
Duzib170G0180 Durio zibethinus HOM05D006474 ORTHO05D007994 2.6e-162 575.9 394 68.5
ECA236G3875 Erigeron canadensis HOM05D006474 ORTHO05D007994 2.6e-162 575.9 366 69.1
Ciclev10008481m.g Citrus clementina HOM05D006474 ORTHO05D007994 3.4e-162 575.5 390 70.3
vmacro20800 Vaccinium macrocarpon HOM05D006474 ORTHO05D007994 4.4e-162 575.1 427 64.2
arahy.Tifrunner.gnm1.ann1.Z6GGIF Arachis hypogaea HOM05D006474 ORTHO05D007994 1.3e-161 573.5 388 68.3
ATR0580G130 Amborella trichopoda HOM05D006474 ORTHO05D007994 1.7e-161 573.2 365 71.5
MBI14_g10727_MAGBIO Magnolia biondii HOM05D006474 ORTHO05D007994 2.9e-161 572.4 427 64.2
MSTRG.5932 Avicennia marina HOM05D006474 ORTHO05D007994 3.8e-161 572.0 419 62.3
Nn8g40661 Nelumbo nucifera HOM05D006474 ORTHO05D007994 8.4e-161 570.9 357 73.9
PSO063G0500 Papaver somniferum HOM05D006474 ORTHO05D007994 8.4e-161 570.9 368 70.9
AUR62027431 Chenopodium quinoa HOM05D006474 ORTHO05D007994 9.2e-160 567.4 361 68.1
Zm00001eb273050 Zea mays HOM05D006474 ORTHO05D007994 3.5e-159 565.5 364 69.0
Aa31LG2G20660 Aethionema arabicum HOM05D006474 ORTHO05D007994 6.0e-159 564.7 389 68.9
Oeu035450.1 Olea europaea HOM05D006474 ORTHO05D007994 2.3e-158 562.8 367 69.2
CARHR237790 Cardamine hirsuta HOM05D006474 ORTHO05D007994 1.5e-157 560.1 367 70.8
Thhalv10025251m.g Eutrema salsugineum HOM05D006474 ORTHO05D007994 1.5e-157 560.1 368 70.9
Migut.J00779 Erythranthe guttata HOM05D006474 ORTHO05D007994 1.9e-157 559.7 366 67.8
Os06g0698785 Oryza sativa ssp. japonica HOM05D006474 ORTHO05D007994 2.5e-157 559.3 400 64.5
HPP92_010297 Vanilla planifolia HOM05D006474 ORTHO05D007994 3.3e-157 558.9 366 68.9
AT4G29890 Arabidopsis thaliana HOM05D006474 ORTHO05D007994 9.6e-157 557.4 367 69.8
A03p59310 Brassica napus HOM05D006474 ORTHO05D007994 2.1e-156 556.2 393 65.6
BraA03t14988Z Brassica rapa HOM05D006474 ORTHO05D007994 2.1e-156 556.2 393 65.6
Sp7g27700 Schrenkiella parvula HOM05D006474 ORTHO05D007994 4.7e-156 555.1 367 69.5
AL7G22360 Arabidopsis lyrata HOM05D006474 ORTHO05D007994 8.1e-156 554.3 366 69.4
CDE02G2399 Ceratophyllum demersum HOM05D006474 ORTHO05D007994 2.4e-155 552.7 385 65.5
Carub.0007s1076 Capsella rubella HOM05D006474 ORTHO05D007994 1.2e-154 550.4 389 66.1
Dinv41197 Davidia involucrata HOM05D006474 ORTHO05D007994 2.6e-154 549.3 422 62.8
SalBow1G1087 Salvia bowleyana HOM05D006474 ORTHO05D007994 1.7e-153 546.6 366 67.2
SGA_v2.0_scaffold112G31632 Striga asiatica HOM05D006474 ORTHO05D007994 1.7e-153 546.6 414 62.6
C07p57320 Brassica napus HOM05D006474 ORTHO05D007994 1.4e-152 543.5 371 68.5
Sopen07g004190 Solanum pennellii HOM05D006474 ORTHO05D007994 2.4e-152 542.7 362 68.2
BolC7t46201H Brassica oleracea HOM05D006474 ORTHO05D007994 7.1e-152 541.2 393 65.4
Rhsim01G0114400 Rhododendron simsii HOM05D006474 ORTHO05D007994 1.6e-151 540.0 324 76.2
Solyc07g008300.3 Solanum lycopersicum HOM05D006474 ORTHO05D007994 2.1e-151 539.7 365 67.7
HanXRQChr06g0181381 Helianthus annuus HOM05D006474 ORTHO05D007994 4.6e-151 538.5 388 64.2
Atru.BG.24.p Acer truncatum HOM05D006474 ORTHO05D007994 6.0e-151 538.1 347 72.9
BcaNung00499 Brassica carinata HOM05D006474 ORTHO05D007994 7.8e-151 537.7 374 68.2
Sed0005056 Sechium edule HOM05D006474 ORTHO05D007994 1.3e-150 537.0 396 64.6
Gohir.D04G006800 Gossypium hirsutum HOM05D006474 ORTHO05D007994 1.7e-150 536.6 368 68.2
Sed0007392 Sechium edule HOM05D006474 ORTHO05D007994 8.7e-150 534.3 367 64.0
CANSAT54G2413 Cannabis sativa HOM05D006474 ORTHO05D007994 2.4e-144 516.2 363 66.1
Psat4g014320 Pisum sativum HOM05D006474 ORTHO05D007994 5.4e-144 515.0 367 65.9
Lsat_1_v5_gn_8_68301 Lactuca sativa HOM05D006474 ORTHO05D007994 9.3e-144 514.2 403 62.5
Migut.J00780 Erythranthe guttata HOM05D006474 ORTHO05D007994 1.1e-141 507.3 365 61.6
Ah.14g085320 Amaranthus hybridus HOM05D006474 ORTHO05D007994 8.1e-140 501.1 321 70.1
AUR62031264 Chenopodium quinoa HOM05D006474 ORTHO05D007994 4.6e-135 485.3 302 69.5
AagrBONN_evm.TU.Sc2ySwM_117.1622 Anthoceros agrestis HOM05D006474 ORTHO05D007994 3.0e-134 482.6 365 60.0
Phvul.003G140100 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 5.6e-133 478.4 293 71.3
SMO196G0177 Selaginella moellendorffii HOM05D006474 ORTHO05D007994 1.6e-132 476.9 389 57.3
CAN.G403.4 Capsicum annuum HOM05D006474 ORTHO05D007994 1.4e-131 473.8 320 68.4
FAN22G2051 Fragaria x ananassa HOM05D006474 ORTHO05D007994 2.1e-127 459.9 378 69.0
AUR62032506 Chenopodium quinoa HOM05D006474 ORTHO05D007994 1.3e-124 450.7 404 50.7
Pp3c13_13580 Physcomitrium patens HOM05D006474 ORTHO05D007994 2.2e-124 449.9 358 56.7
AUR62043230 Chenopodium quinoa HOM05D006474 ORTHO05D007994 3.4e-122 442.6 404 49.8
Mapoly0089s0013 Marchantia polymorpha HOM05D006474 ORTHO05D007994 3.2e-120 436.0 377 54.1
PSO170G4238 Papaver somniferum HOM05D006474 ORTHO05D007994 6.3e-116 421.8 276 69.6
EL10Ac6g13937 Beta vulgaris HOM05D006474 ORTHO05D007994 2.5e-112 409.8 362 51.1
Cfa013469 Carpinus fangiana HOM05D006474 ORTHO05D007994 4.8e-108 395.6 277 69.0
Lju50A4G45 Lonicera japonica HOM05D006474 ORTHO05D007994 4.2e-104 382.5 260 69.2
CSS0012665 Camellia sinensis var. sinensis HOM05D006474 ORTHO05D007994 2.2e-100 370.2 225 74.2
MCO02G024 Micromonas commoda HOM05D006474 ORTHO05D007994 8.2e-92 341.7 365 47.1
Hund22985 Selenicereus undatus HOM05D006474 ORTHO05D007994 2.4e-83 313.5 401 45.9
Lsat_1_v5_gn_9_69680 Lactuca sativa HOM05D006474 ORTHO05D007994 5.0e-73 279.3 237 57.8
Phvul.010G082000 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 6.2e-63 245.7 186 60.8
PRCOL_00004194 Prasinoderma coloniale HOM05D006474 ORTHO05D007994 5.1e-57 226.1 483 31.3
Lsat_1_v5_gn_5_32380 Lactuca sativa HOM05D006474 ORTHO05D007994 1.1e-54 218.4 194 53.1
Ah.03g136670 Amaranthus hybridus HOM05D006474 ORTHO05D007994 2.7e-50 203.8 231 41.6
RcHm_v2.0_Chr4g0398881 Rosa chinensis HOM05D006474 ORTHO05D007994 1.2e-42 178.3 320 40.0
SEGI_01125 Sequoiadendron giganteum HOM05D006474 ORTHO05D007994 7.8e-42 175.6 129 61.2
Phvul.011G131100 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 6.2e-31 139.4 102 59.8
Actinidia29962 Actinidia chinensis HOM05D006474 ORTHO05D007994 2.6e-21 107.5 90 58.9
Gohir.A08G164600 Gossypium hirsutum HOM05D000075 ORTHO05D000264 6.4e-20 102.8 86 55.8
Thecc.09G192500 Theobroma cacao HOM05D006474 ORTHO05D007994 2.5e-19 100.9 61 73.8
Gohir.A01G088200 Gossypium hirsutum HOM05D006474 ORTHO05D007994 3.2e-19 100.5 60 73.3
SEGI_13868 Sequoiadendron giganteum HOM05D006474 ORTHO05D007994 6.0e-18 96.3 61 72.1
Oeu005633.1 Olea europaea HOM05D006474 ORTHO05D007994 5.3e-14 83.2 62 59.7
Lsat_1_v5_gn_3_77541 Lactuca sativa HOM05D006474 ORTHO05D007994 3.4e-13 80.5 51 68.6
Gohir.A05G306101 Gossypium hirsutum HOM05D005508 ORTHO05D007994 1.7e-12 78.2 43 74.4
SEGI_25707 Sequoiadendron giganteum HOM05D006474 ORTHO05D007994 1.1e-08 65.5 42 61.9
Gohir.A06G077600 Gossypium hirsutum HOM05D000075 ORTHO05D000264 9.7e-08 62.4 71 47.9


User provided reference genes

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