Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G0363 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.5e-98 362.8 188 100.0
RcHm_v2.0_Chr7g0210541 Rosa chinensis HOM05D004480 ORTHO05D005546 8.0e-71 270.8 195 74.4
RcHm_v2.0_Chr1g0334711 Rosa chinensis HOM05D004480 ORTHO05D005546 1.8e-70 269.6 195 73.3
FAN03G0050 Fragaria x ananassa HOM05D004480 ORTHO05D005546 5.7e-69 264.6 201 71.6
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 5.7e-69 264.6 201 71.6
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 5.7e-69 264.6 201 71.6
FAN01G1951 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.0e-65 253.8 195 70.8
FvH4_4g10760 Fragaria vesca HOM05D004480 ORTHO05D005546 4.9e-60 235.0 195 69.2
FAN12G1968 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.4e-59 232.6 195 68.7
FAN12G3644 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.2e-58 230.3 195 68.2
FvH4_7g06440 Fragaria vesca HOM05D004480 ORTHO05D005546 9.5e-48 194.1 145 72.4
Prupe.5G084300 Prunus persica HOM05D004480 ORTHO05D005546 8.9e-46 187.6 216 53.7
MD01G1035500 Malus domestica HOM05D004480 ORTHO05D005546 2.6e-45 186.0 198 55.6
MD15G1320300 Malus domestica HOM05D004480 ORTHO05D005546 1.1e-43 180.6 198 55.6
QL11p020579 Quercus lobata HOM05D004480 ORTHO05D005546 6.8e-38 161.4 192 50.5
CiPaw.01G203500 Carya illinoinensis HOM05D004480 ORTHO05D005546 3.4e-37 159.1 200 50.0
Manes.17G005700 Manihot esculenta HOM05D004480 ORTHO05D005546 3.4e-37 159.1 198 46.5
Duzib177G0198 Durio zibethinus HOM05D004480 ORTHO05D005546 6.0e-34 148.3 197 46.2
Cfa008538 Carpinus fangiana HOM05D004480 ORTHO05D005546 1.0e-33 147.5 200 48.5
GSVIVG01038269001 Vitis vinifera HOM05D004480 ORTHO05D005546 1.5e-32 143.7 198 49.0
Gorai.004G019100 Gossypium raimondii HOM05D004480 ORTHO05D005546 2.5e-32 142.9 197 46.2
Thecc.05G221800 Theobroma cacao HOM05D004480 ORTHO05D005546 3.3e-32 142.5 197 46.7
Glyma.18G043300 Glycine max HOM05D004480 ORTHO05D005546 5.6e-32 141.7 196 45.9
Gohir.A08G013400 Gossypium hirsutum HOM05D004480 ORTHO05D005546 1.2e-31 140.6 197 46.2
Gohir.D08G023800 Gossypium hirsutum HOM05D004480 ORTHO05D005546 1.1e-30 137.5 197 45.2
Hma1.2p1_0513F.1_g169740 Hydrangea macrophylla HOM05D004480 ORTHO05D005546 2.4e-30 136.3 204 44.1
Sed0006001 Sechium edule HOM05D004480 ORTHO05D005546 3.1e-30 136.0 207 44.4
Nn7g35785 Nelumbo nucifera HOM05D004480 ORTHO05D005546 6.8e-30 134.8 199 43.2
CANSAT21G2297 Cannabis sativa HOM05D004480 ORTHO05D005546 1.2e-29 134.0 198 43.4
Lalb_Chr08g0233091 Lupinus albus HOM05D004480 ORTHO05D005546 1.2e-29 134.0 197 44.2
COL.COLO4_23990 Corchorus olitorius HOM05D004480 ORTHO05D005546 1.5e-29 133.7 136 56.6
VMungo1383G0315 Vigna mungo HOM05D004480 ORTHO05D005546 1.5e-29 133.7 196 44.9
Ca_17076_v3 Cicer arietinum L. HOM05D004480 ORTHO05D005546 2.0e-29 133.3 195 44.1
Actinidia18384 Actinidia chinensis HOM05D004480 ORTHO05D005546 1.7e-28 130.2 198 43.9
Rhsim09G0001300 Rhododendron simsii HOM05D004480 ORTHO05D005546 4.9e-28 128.6 199 42.2
BcaC06g33042 Brassica carinata HOM05D004480 ORTHO05D005546 1.9e-27 126.7 175 46.3
Atru.chr11.1453 Acer truncatum HOM05D004480 ORTHO05D005546 2.4e-27 126.3 195 43.1
Atru.chr11.1483 Acer truncatum HOM05D004480 ORTHO05D005546 2.4e-27 126.3 195 43.1
Phvul.001G227600 Phaseolus vulgaris HOM05D004480 ORTHO05D005546 5.4e-27 125.2 197 42.1
BraA03t13931Z Brassica rapa HOM05D004480 ORTHO05D005546 9.2e-27 124.4 198 41.9
Ciclev10008180m.g Citrus clementina HOM05D004480 ORTHO05D005546 1.2e-26 124.0 202 41.1
Duzib128G0969 Durio zibethinus HOM05D004480 ORTHO05D005546 1.2e-26 124.0 136 50.7
A03p48230 Brassica napus HOM05D004480 ORTHO05D005546 2.1e-26 123.2 176 43.8
TWI74G1000 Tripterygium wilfordii HOM05D004480 ORTHO05D005546 2.1e-26 123.2 207 42.5
Dinv39175 Davidia involucrata HOM05D004480 ORTHO05D005546 2.7e-26 122.9 199 42.2
Dinv41802 Davidia involucrata HOM05D004480 ORTHO05D005546 3.5e-26 122.5 169 46.2
Medtr4g094615 Medicago truncatula HOM05D004480 ORTHO05D005546 3.5e-26 122.5 199 43.2
Sed0005158 Sechium edule HOM05D004480 ORTHO05D005546 4.6e-26 122.1 158 46.8
TAR626G1520 Trochodendron aralioides HOM05D004480 ORTHO05D005546 4.6e-26 122.1 150 44.7
MBI07_g30868_MAGBIO Magnolia biondii HOM05D004480 ORTHO05D005546 1.0e-25 120.9 225 38.2
MELO3C013997.2 Cucumis melo HOM05D004480 ORTHO05D005546 3.9e-25 119.0 210 39.5
TAR623G1647 Trochodendron aralioides HOM05D004480 ORTHO05D005546 3.9e-25 119.0 145 45.5
Lj1g0018422 Lotus japonicus HOM05D004480 ORTHO05D005546 5.1e-25 118.6 195 41.0
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 5.1e-25 118.6 160 47.5
PGR119G0799 Punica granatum HOM05D004480 ORTHO05D005546 5.1e-25 118.6 195 41.5
vmacro00734 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 5.1e-25 118.6 213 38.5
Cc03_g16200 Coffea canephora HOM05D004480 ORTHO05D005546 6.6e-25 118.2 200 41.5
Eucgr.H00240 Eucalyptus grandis HOM05D004480 ORTHO05D005546 6.6e-25 118.2 198 41.9
arahy.Tifrunner.gnm1.ann1.0BX3U4 Arachis hypogaea HOM05D004480 ORTHO05D005546 8.6e-25 117.9 196 42.9
CsaV3_3G003300 Cucumis sativus L. HOM05D004480 ORTHO05D005546 8.6e-25 117.9 210 40.5
Glyma.11G213400 Glycine max HOM05D004480 ORTHO05D005546 1.5e-24 117.1 136 48.5
Psat7g090480 Pisum sativum HOM05D004480 ORTHO05D005546 2.5e-24 116.3 171 43.9
CSS0010781 Camellia sinensis var. sinensis HOM05D004480 ORTHO05D005546 3.3e-24 115.9 160 45.6
Sabra17G0005500 Salix brachista HOM05D000001 ORTHO05D005546 3.3e-24 115.9 168 43.5
SGA_v2.0_scaffold19G08907 Striga asiatica HOM05D004480 ORTHO05D005546 7.3e-24 114.8 190 40.5
ClCG00G000020 Citrullus lanatus HOM05D004480 ORTHO05D005546 9.6e-24 114.4 173 42.8
C07p46260 Brassica napus HOM05D004480 ORTHO05D005546 1.6e-23 113.6 176 42.0
Oeu019179.1 Olea europaea HOM05D004480 ORTHO05D005546 2.1e-23 113.2 204 40.7
BcaB01g00536 Brassica carinata HOM05D004480 ORTHO05D005546 2.8e-23 112.8 176 42.0
BolC8t50268H Brassica oleracea HOM05D004480 ORTHO05D005546 2.8e-23 112.8 197 40.6
Migut.N03010 Erythranthe guttata HOM05D004480 ORTHO05D005546 3.6e-23 112.5 141 46.1
BraA09t39892Z Brassica rapa HOM05D004480 ORTHO05D005546 4.7e-23 112.1 197 40.6
PGR083G0026 Punica granatum HOM05D004480 ORTHO05D005546 4.7e-23 112.1 196 42.3
Sp5g10950 Schrenkiella parvula HOM05D004480 ORTHO05D005546 4.7e-23 112.1 197 38.6
Solyc01g007120.3 Solanum lycopersicum HOM05D004480 ORTHO05D005546 4.7e-23 112.1 139 45.3
vmacro20035 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 4.7e-23 112.1 213 37.6
ClCG00G001030 Citrullus lanatus HOM05D004480 ORTHO05D005546 8.1e-23 111.3 182 40.7
SalBow1G2458 Salvia bowleyana HOM05D004480 ORTHO05D005546 1.8e-22 110.2 198 39.9
TPR.G4936 Trifolium pratense HOM05D004480 ORTHO05D005546 1.8e-22 110.2 151 47.0
Sopen01g003100 Solanum pennellii HOM05D004480 ORTHO05D005546 5.2e-22 108.6 186 38.2
SGA_v2.0_scaffold25G11023 Striga asiatica HOM05D004480 ORTHO05D005546 9.0e-22 107.8 168 40.5
VMungo1309G1911 Vigna mungo HOM05D004480 ORTHO05D005546 1.2e-21 107.5 196 40.8
BraA01t02261Z Brassica rapa HOM05D004480 ORTHO05D005546 1.5e-21 107.1 202 39.1
A09p44300 Brassica napus HOM05D004480 ORTHO05D005546 2.6e-21 106.3 175 41.7
MSTRG.22059 Avicennia marina HOM05D004480 ORTHO05D005546 3.4e-21 105.9 217 35.0
C08p26540 Brassica napus HOM05D004480 ORTHO05D005546 3.4e-21 105.9 177 41.8
Thhalv10010355m.g Eutrema salsugineum HOM05D004480 ORTHO05D005546 3.4e-21 105.9 174 39.1
A01p23550 Brassica napus HOM05D004480 ORTHO05D005546 5.8e-21 105.1 175 38.9
PGSC0003DMG400021321 Solanum tuberosum HOM05D004480 ORTHO05D005546 1.3e-20 104.0 136 44.1
AT3G51270 Arabidopsis thaliana HOM05D004480 ORTHO05D005546 1.7e-20 103.6 163 41.1
CAN.G574.17 Capsicum annuum HOM05D004480 ORTHO05D005546 1.7e-20 103.6 134 46.3
AL5G31690 Arabidopsis lyrata HOM05D004480 ORTHO05D005546 3.8e-20 102.4 197 37.6
SalBow6G1632 Salvia bowleyana HOM05D004480 ORTHO05D005546 3.8e-20 102.4 188 37.8
BcaNung06395 Brassica carinata HOM05D004480 ORTHO05D005546 8.4e-20 101.3 195 36.9
C01p29210 Brassica napus HOM05D004480 ORTHO05D005546 8.4e-20 101.3 195 36.9
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 1.1e-19 100.9 198 38.9
Sc03g0007800 Simmondsia chinensis HOM05D004480 ORTHO05D005546 1.1e-19 100.9 158 41.1
BolC1t02850H Brassica oleracea HOM05D004480 ORTHO05D005546 1.4e-19 100.5 195 37.4
HPP92_020625 Vanilla planifolia HOM05D004480 ORTHO05D005546 1.4e-19 100.5 202 37.6
BcaNung00392 Brassica carinata HOM05D004480 ORTHO05D005546 5.4e-19 98.6 109 49.5
ATR0743G007 Amborella trichopoda HOM05D004480 ORTHO05D005546 2.1e-18 96.7 220 35.9
THA.LOC104827565 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 6.0e-18 95.1 196 37.2
BolC7t45142H Brassica oleracea HOM05D004480 ORTHO05D005546 7.8e-18 94.7 195 37.9
SHI53263 Sapria himalayana HOM05D004480 ORTHO05D005546 7.8e-18 94.7 101 55.4
Carub.0005s1764 Capsella rubella HOM05D004480 ORTHO05D005546 1.0e-17 94.4 110 48.2
Ciclev10020879m.g Citrus clementina HOM05D004480 ORTHO05D005546 1.0e-17 94.4 216 37.0
Haze_11102 Corylus avellana HOM05D004480 ORTHO05D005546 1.0e-17 94.4 100 53.0
PSO732G0488 Papaver somniferum HOM05D004480 ORTHO05D005546 1.3e-17 94.0 98 52.0
PSO675G8718 Papaver somniferum HOM05D004480 ORTHO05D005546 2.3e-17 93.2 98 52.0
Os01g0888700 Oryza sativa ssp. japonica HOM05D004480 ORTHO05D005546 3.0e-17 92.8 172 37.8
ECA248G1292 Erigeron canadensis HOM05D004480 ORTHO05D005546 6.6e-17 91.7 155 40.6
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 1.5e-16 90.5 113 47.8
HanXRQChr14g0458331 Helianthus annuus HOM05D004480 ORTHO05D005546 4.3e-16 89.0 157 41.4
Lsat_1_v5_gn_5_33821 Lactuca sativa HOM05D004480 ORTHO05D005546 5.6e-16 88.6 167 40.7
THA.LOC104802357 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 1.6e-15 87.0 102 52.9
Hund12181 Selenicereus undatus HOM05D004480 ORTHO05D005546 2.1e-15 86.7 207 36.2
Zm00001eb145320 Zea mays HOM05D004480 ORTHO05D005546 2.1e-15 86.7 111 49.5
DCAR_011737 Daucus carota HOM05D004480 ORTHO05D005546 2.8e-15 86.3 142 41.5
SEGI_41177 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 2.8e-15 86.3 221 33.9
Nitab4.5_0002686g0020 Nicotiana tabacum HOM05D004480 ORTHO05D005546 3.6e-15 85.9 186 36.6
Zm00001eb233680 Zea mays HOM05D009386 ORTHO05D011419 3.6e-15 85.9 126 42.9
CDE02G0168 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 6.2e-15 85.1 117 41.9
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 8.1e-15 84.7 107 43.9
Zm00001eb365940 Zea mays HOM05D004480 ORTHO05D005546 8.1e-15 84.7 108 48.1
HanXRQChr15g0465141 Helianthus annuus HOM05D004480 ORTHO05D005546 4.0e-14 82.4 204 37.3
CDE09G0134 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.2e-13 80.9 99 47.5
ClCG10G003270 Citrullus lanatus HOM05D004480 ORTHO05D005546 1.5e-13 80.5 294 27.9
CARHR160850 Cardamine hirsuta HOM05D004480 ORTHO05D005546 2.0e-13 80.1 164 36.0
HanXRQChr15g0464981 Helianthus annuus HOM05D004480 ORTHO05D005546 1.7e-12 77.0 99 47.5
Mapoly0052s0036 Marchantia polymorpha HOM05D004480 ORTHO05D005546 1.4e-11 73.9 198 30.8
unitig_62.g23773 Utricularia gibba HOM05D004480 ORTHO05D005546 1.9e-11 73.6 197 32.0
Pp3c20_22360 Physcomitrium patens HOM05D004480 ORTHO05D005546 3.2e-11 72.8 209 30.6
arahy.Tifrunner.gnm1.ann1.JT43NG Arachis hypogaea HOM05D004480 ORTHO05D005546 5.4e-11 72.0 195 34.4
AUR62001702 Chenopodium quinoa HOM05D004480 ORTHO05D005546 1.2e-10 70.9 108 41.7
AagrBONN_evm.TU.Sc2ySwM_228.3019 Anthoceros agrestis HOM05D004480 ORTHO05D005546 2.1e-10 70.1 88 45.5
AUR62020079 Chenopodium quinoa HOM05D004480 ORTHO05D005546 2.1e-10 70.1 157 33.8
Aqoxy2G00126 Aquilegia oxysepala HOM05D004480 ORTHO05D005546 2.7e-10 69.7 145 35.2
CDE09G1409 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 4.6e-10 68.9 134 36.6
BcaC09g50090 Brassica carinata HOM05D004480 ORTHO05D005546 1.0e-09 67.8 171 35.1
Cpa.g.sc9.237 Carica papaya HOM05D004480 ORTHO05D005546 6.7e-09 65.1 196 31.1
SMO203G0211 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 6.7e-09 65.1 99 40.4
CDE09G0674 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 8.7e-09 64.7 110 38.2
CDE09G0719 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 8.7e-09 64.7 110 38.2
Lju124A7T25 Lonicera japonica HOM05D004480 ORTHO05D005546 1.9e-08 63.5 156 33.3
Zm00001eb393850 Zea mays HOM05D009386 ORTHO05D011419 2.5e-08 63.2 106 41.5
Zm00001eb011520 Zea mays HOM05D009386 ORTHO05D011419 3.3e-08 62.8 153 34.0
CDE02G2467 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 9.6e-08 61.2 118 33.9
Ca_25752_v3 Cicer arietinum L. HOM05D009226 ORTHO05D010767 6.9e-06 55.1 99 37.4


User provided reference genes

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