Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G0057 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1823.9 889 100.0
FAN17G1448 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1706.0 868 95.7
FAN12G2099 Fragaria x ananassa HOM05D004097 ORTHO05D005352 0.0e+00 1694.9 860 96.3
FvH4_4g23960 Fragaria vesca HOM05D004097 ORTHO05D005352 0.0e+00 1688.3 860 96.3
RcHm_v2.0_Chr4g0430631 Rosa chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1610.1 862 90.4
Prupe.1G228800 Prunus persica HOM05D004097 ORTHO05D005352 0.0e+00 1412.1 858 78.8
MD13G1116700 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1381.7 863 77.3
MD16G1117400 Malus domestica HOM05D004097 ORTHO05D005352 0.0e+00 1344.7 868 75.3
QL03p053766 Quercus lobata HOM05D004097 ORTHO05D005352 0.0e+00 1320.8 863 72.5
Cfa009333 Carpinus fangiana HOM05D004097 ORTHO05D005352 0.0e+00 1301.2 863 71.6
GSVIVG01010441001 Vitis vinifera HOM05D004097 ORTHO05D005352 0.0e+00 1298.5 863 72.8
CANSAT01G0794 Cannabis sativa HOM05D004097 ORTHO05D005352 0.0e+00 1281.5 859 70.8
TWI36G0618 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1278.8 863 71.3
Ciclev10030695m.g Citrus clementina HOM05D004097 ORTHO05D005352 0.0e+00 1276.9 860 70.1
Thecc.02G212500 Theobroma cacao HOM05D004097 ORTHO05D005352 0.0e+00 1270.8 864 70.7
Manes.13G018100 Manihot esculenta HOM05D004097 ORTHO05D005352 0.0e+00 1269.6 863 70.5
Gorai.002G191800 Gossypium raimondii HOM05D004097 ORTHO05D005352 0.0e+00 1267.7 863 70.6
COL.COLO4_20377 Corchorus olitorius HOM05D004097 ORTHO05D005352 0.0e+00 1265.8 865 70.8
Gohir.A01G155000 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1265.4 863 70.5
Gohir.D01G154900 Gossypium hirsutum HOM05D004097 ORTHO05D005352 0.0e+00 1265.4 863 70.6
CiPaw.05G112000 Carya illinoinensis HOM05D004097 ORTHO05D005352 0.0e+00 1262.7 863 70.0
PGR102G2071 Punica granatum HOM05D004097 ORTHO05D005352 0.0e+00 1257.3 863 68.5
Lj6C825T6 Lonicera japonica HOM05D004097 ORTHO05D005352 0.0e+00 1256.9 880 68.3
Duzib251G0245 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1246.5 864 69.2
CSS0021321 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1245.3 859 68.8
CSS0033535 Camellia sinensis var. sinensis HOM05D004097 ORTHO05D005352 0.0e+00 1245.3 859 68.8
Potri.010G059000 Populus trichocarpa HOM05D004097 ORTHO05D005352 0.0e+00 1244.6 859 68.9
TWI18G1202 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 0.0e+00 1243.0 861 69.7
Eucgr.B03480 Eucalyptus grandis HOM05D004097 ORTHO05D005352 0.0e+00 1238.4 862 68.7
Hma1.2p1_0668F.1_g200000 Hydrangea macrophylla HOM05D004097 ORTHO05D005352 0.0e+00 1234.9 831 70.8
TAR629G3065 Trochodendron aralioides HOM05D004097 ORTHO05D005352 0.0e+00 1231.5 895 66.5
Lj4g0020055 Lotus japonicus HOM05D004097 ORTHO05D005352 0.0e+00 1227.2 861 68.6
CsaV3_5G030370 Cucumis sativus L. HOM05D004097 ORTHO05D005352 0.0e+00 1220.3 863 68.0
Duzib248G1376 Durio zibethinus HOM05D004097 ORTHO05D005352 0.0e+00 1220.3 864 68.2
Glyma.05G146500 Glycine max HOM05D004097 ORTHO05D005352 0.0e+00 1209.9 822 69.2
MELO3C011876.2 Cucumis melo HOM05D004097 ORTHO05D005352 0.0e+00 1209.1 863 67.1
Sabra10G0046600 Salix brachista HOM05D004097 ORTHO05D005352 0.0e+00 1208.7 861 67.7
Dinv14824 Davidia involucrata HOM05D004097 ORTHO05D005352 0.0e+00 1205.7 819 70.7
Nn4g22358 Nelumbo nucifera HOM05D004097 ORTHO05D005352 0.0e+00 1204.5 864 66.3
Psat7g078160 Pisum sativum HOM05D004097 ORTHO05D005352 0.0e+00 1203.7 861 67.2
Medtr8g080360 Medicago truncatula HOM05D004097 ORTHO05D005352 0.0e+00 1203.0 859 67.3
TPR.G17087 Trifolium pratense HOM05D004097 ORTHO05D005352 0.0e+00 1203.0 896 66.2
ClCG11G013780 Citrullus lanatus HOM05D004097 ORTHO05D005352 0.0e+00 1202.2 863 67.0
Rhsim12G0102000 Rhododendron simsii HOM05D004097 ORTHO05D005352 0.0e+00 1201.4 983 61.5
Aqoxy5G03417 Aquilegia oxysepala HOM05D004097 ORTHO05D005352 0.0e+00 1198.7 868 66.6
arahy.Tifrunner.gnm1.ann1.11CB4V Arachis hypogaea HOM05D004097 ORTHO05D005352 0.0e+00 1197.2 864 66.7
Ca_18044_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 0.0e+00 1196.8 859 66.4
Sed0007371 Sechium edule HOM05D004097 ORTHO05D005352 0.0e+00 1195.6 863 67.8
THA.LOC104807884 Tarenaya hassleriana HOM05D004097 ORTHO05D005352 0.0e+00 1193.7 863 65.7
VMungo0251G0768 Vigna mungo HOM05D004097 ORTHO05D005352 0.0e+00 1192.2 859 66.9
arahy.Tifrunner.gnm1.ann1.7LT28F Arachis hypogaea HOM05D004097 ORTHO05D005352 0.0e+00 1190.3 864 66.4
Actinidia20697 Actinidia chinensis HOM05D004097 ORTHO05D005352 0.0e+00 1189.9 824 69.5
Lalb_Chr13g0294221 Lupinus albus HOM05D004097 ORTHO05D005352 0.0e+00 1187.9 860 67.2
Oeu019032.1 Olea europaea HOM05D004097 ORTHO05D005352 0.0e+00 1183.7 865 65.9
Sopen05g010470 Solanum pennellii HOM05D004097 ORTHO05D005352 0.0e+00 1178.3 884 64.6
Phvul.002G174800 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1177.2 859 66.4
Cc00_g13540 Coffea canephora HOM05D004097 ORTHO05D005352 0.0e+00 1176.8 861 65.5
CAN.G1548.3 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1170.2 859 65.4
Hund25455 Selenicereus undatus HOM05D004097 ORTHO05D005352 0.0e+00 1169.5 853 65.7
EL10Ac6g13480 Beta vulgaris HOM05D004097 ORTHO05D005352 0.0e+00 1166.8 857 65.3
MBI11_g07450_MAGBIO Magnolia biondii HOM05D004097 ORTHO05D005352 0.0e+00 1164.8 870 64.6
PSO017G2193 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1162.1 864 64.0
PSO478G3686 Papaver somniferum HOM05D004097 ORTHO05D005352 0.0e+00 1160.2 858 64.0
AT1G67490 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 0.0e+00 1155.2 863 64.0
CAN.G311.73 Capsicum annuum HOM05D004097 ORTHO05D005352 0.0e+00 1154.0 883 63.5
Sp5g22470 Schrenkiella parvula HOM05D004097 ORTHO05D005352 0.0e+00 1152.1 863 63.5
Carub.0002s1382 Capsella rubella HOM05D004097 ORTHO05D005352 0.0e+00 1149.4 865 64.2
SalBow2G2696 Salvia bowleyana HOM05D004097 ORTHO05D005352 0.0e+00 1149.0 840 65.6
Migut.K00711 Erythranthe guttata HOM05D004097 ORTHO05D005352 0.0e+00 1143.6 853 64.9
HanXRQChr17g0540261 Helianthus annuus HOM05D004097 ORTHO05D005352 0.0e+00 1139.4 861 62.8
TPR.G17069 Trifolium pratense HOM05D004097 ORTHO05D005352 0.0e+00 1136.3 858 64.2
A07p32530 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1134.4 869 63.3
BraA07t30877Z Brassica rapa HOM05D004097 ORTHO05D005352 0.0e+00 1134.4 867 63.4
ECA246G4064 Erigeron canadensis HOM05D004097 ORTHO05D005352 0.0e+00 1134.0 860 63.0
Glyma.05G146400 Glycine max HOM05D004097 ORTHO05D005352 0.0e+00 1134.0 859 64.1
BolC6t38956H Brassica oleracea HOM05D004097 ORTHO05D005352 0.0e+00 1133.2 868 63.2
AL2G26080 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 0.0e+00 1131.3 896 61.0
MSTRG.7991 Avicennia marina HOM05D004097 ORTHO05D005352 0.0e+00 1130.2 858 63.5
Aa31sc781G10 Aethionema arabicum HOM05D004097 ORTHO05D005352 0.0e+00 1129.0 880 62.6
Psat7g078280 Pisum sativum HOM05D004097 ORTHO05D005352 0.0e+00 1129.0 860 64.0
C06p38670 Brassica napus HOM05D004097 ORTHO05D005352 0.0e+00 1124.0 868 63.0
Thhalv10018104m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 0.0e+00 1121.3 900 61.2
Lalb_Chr13g0294231 Lupinus albus HOM05D004097 ORTHO05D005352 0.0e+00 1104.4 752 68.4
Atru.chr11.2303 Acer truncatum HOM05D004097 ORTHO05D005352 0.0e+00 1099.3 776 69.1
Medtr8g080290 Medicago truncatula HOM05D004097 ORTHO05D005352 0.0e+00 1094.3 858 62.0
AUR62005598 Chenopodium quinoa HOM05D004097 ORTHO05D005352 0.0e+00 1092.8 873 60.4
ATR0561G059 Amborella trichopoda HOM05D004097 ORTHO05D005352 0.0e+00 1090.9 861 61.1
SGA_v2.0_scaffold130G34253 Striga asiatica HOM05D004097 ORTHO05D005352 0.0e+00 1088.9 837 63.0
Lsat_1_v5_gn_3_29780 Lactuca sativa HOM05D004097 ORTHO05D005352 0.0e+00 1079.7 861 60.7
Solyc05g015220.3 Solanum lycopersicum HOM05D004097 ORTHO05D005352 0.0e+00 1079.7 725 69.7
PSO675G1898 Papaver somniferum HOM05D004097 ORTHO05D005352 6.1e-312 1073.9 785 63.8
Ah.02g130710 Amaranthus hybridus HOM05D004097 ORTHO05D005352 1.2e-311 1072.8 858 60.8
Sp1g23450 Schrenkiella parvula HOM05D004097 ORTHO05D005352 6.0e-310 1067.4 781 64.5
Thhalv10006835m.g Eutrema salsugineum HOM05D004097 ORTHO05D005352 3.9e-309 1064.7 784 64.2
Ca_18045_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 5.1e-309 1064.3 888 60.1
CARHR026770 Cardamine hirsuta HOM05D004097 ORTHO05D005352 4.3e-308 1061.2 783 63.1
AL1G40600 Arabidopsis lyrata HOM05D004097 ORTHO05D005352 3.6e-307 1058.1 783 63.0
HPP92_023192 Vanilla planifolia HOM05D004097 ORTHO05D005352 1.4e-306 1056.2 869 59.4
DCAR_031191 Daucus carota HOM05D004097 ORTHO05D005352 6.9e-306 1053.9 864 60.6
Os01g0921200 Oryza sativa ssp. japonica HOM05D004097 ORTHO05D005352 6.9e-306 1053.9 815 60.2
Peaxi162Scf00128g01140 Petunia axillaris HOM05D004097 ORTHO05D005352 2.6e-305 1052.0 716 67.7
C07p17980 Brassica napus HOM05D004097 ORTHO05D005352 7.6e-305 1050.4 782 63.7
AT1G24320 Arabidopsis thaliana HOM05D004097 ORTHO05D005352 2.2e-304 1048.9 782 62.9
BcaB03g15361 Brassica carinata HOM05D004097 ORTHO05D005352 2.4e-303 1045.4 867 60.2
BcaC06g35272 Brassica carinata HOM05D004097 ORTHO05D005352 4.2e-303 1044.6 783 63.2
AUR62024129 Chenopodium quinoa HOM05D004097 ORTHO05D005352 4.2e-303 1044.6 844 60.0
BcaB03g13996 Brassica carinata HOM05D004097 ORTHO05D005352 6.0e-302 1040.8 784 63.1
A07p12040 Brassica napus HOM05D004097 ORTHO05D005352 6.0e-302 1040.8 814 61.5
BcaB03g13994 Brassica carinata HOM05D004097 ORTHO05D005352 2.5e-300 1035.4 786 62.8
Zm00001eb143210 Zea mays HOM05D004097 ORTHO05D005352 2.4e-298 1028.9 782 60.6
BolC7t42308H Brassica oleracea HOM05D004097 ORTHO05D005352 1.3e-291 1006.5 785 61.7
SHI17952 Sapria himalayana HOM05D004097 ORTHO05D005352 1.3e-291 1006.5 925 54.8
SEGI_39835 Sequoiadendron giganteum HOM05D004097 ORTHO05D005352 7.1e-287 990.7 850 56.1
Carub.0001s2575 Capsella rubella HOM05D004097 ORTHO05D005352 1.2e-286 989.9 737 63.5
CDE05G0715 Ceratophyllum demersum HOM05D004097 ORTHO05D005352 3.5e-286 988.4 858 56.5
Aa31LG7G6710 Aethionema arabicum HOM05D004097 ORTHO05D005352 9.4e-279 963.8 803 58.4
DCAR_026468 Daucus carota HOM05D004097 ORTHO05D005352 2.7e-278 962.2 867 56.3
Mapoly0071s0095 Marchantia polymorpha HOM05D004097 ORTHO05D005352 1.6e-249 866.7 867 51.3
Sc04g0010030 Simmondsia chinensis HOM05D004097 ORTHO05D005352 1.2e-244 850.5 658 62.9
SMO358G0259 Selaginella moellendorffii HOM05D004097 ORTHO05D005352 9.8e-244 847.4 849 49.7
Sp1g06290 Schrenkiella parvula HOM05D004097 ORTHO05D005352 2.4e-242 842.8 789 53.6
A10p06090 Brassica napus HOM05D004097 ORTHO05D005352 1.2e-241 840.5 798 53.4
Haze_12390 Corylus avellana HOM05D004097 ORTHO05D005352 2.7e-241 839.3 611 67.9
Pp3c11_13660 Physcomitrium patens HOM05D004097 ORTHO05D005352 2.9e-232 809.3 809 48.2
Nitab4.5_0005179g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 2.0e-225 786.6 625 61.0
CBR_g11887 Chara braunii HOM05D004097 ORTHO05D005352 7.8e-225 784.6 798 48.4
Oeu036882.3 Olea europaea HOM05D004097 ORTHO05D005352 9.5e-215 751.1 661 57.9
CARHR060060 Cardamine hirsuta HOM05D004097 ORTHO05D005352 7.6e-212 741.5 472 71.8
BcaB02g06725 Brassica carinata HOM05D004097 ORTHO05D005352 2.1e-209 733.4 786 49.1
Nitab4.5_0002174g0010 Nicotiana tabacum HOM05D004097 ORTHO05D005352 2.9e-203 713.0 437 73.5
AagrBONN_evm.TU.Sc2ySwM_344.2645 Anthoceros agrestis HOM05D004097 ORTHO05D005352 1.9e-194 683.7 675 49.2
Ca_18046_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 9.3e-194 681.4 428 71.5
Glyma.08G103233 Glycine max HOM05D004097 ORTHO05D005352 8.4e-179 631.7 426 67.6
BolC5t29329H Brassica oleracea HOM05D004097 ORTHO05D005352 2.1e-177 627.1 668 51.3
FAN22G1343 Fragaria x ananassa HOM05D004097 ORTHO05D005352 6.0e-177 625.5 412 79.9
unitig_22.g6409 Utricularia gibba HOM05D004097 ORTHO05D005352 1.3e-174 617.8 585 53.2
VMungo0251G3132 Vigna mungo HOM05D004097 ORTHO05D005352 4.8e-174 615.9 495 62.0
Phvul.002G174901 Phaseolus vulgaris HOM05D004097 ORTHO05D005352 9.0e-173 611.7 548 55.7
Cre13.g579734 Chlamydomonas reinhardtii HOM05D004097 ORTHO05D005352 1.4e-162 577.8 877 37.6
C05p05580 Brassica napus HOM05D004097 ORTHO05D005352 3.6e-153 546.6 571 52.4
Haze_12355 Corylus avellana HOM05D004097 ORTHO05D005352 2.9e-139 500.4 790 39.6
VMungo0251G3103 Vigna mungo HOM05D004097 ORTHO05D005352 1.4e-136 491.5 320 66.9
Glyma.08G103167 Glycine max HOM05D004097 ORTHO05D005352 8.5e-131 472.2 419 58.9
Haze_12391 Corylus avellana HOM05D004097 ORTHO05D005352 1.6e-129 468.0 269 78.1
Cpa.g.sc1279.1 Carica papaya HOM05D004097 ORTHO05D005352 8.8e-128 462.2 447 54.6
Prupe.1G228900 Prunus persica HOM05D004097 ORTHO05D005352 3.3e-122 443.7 400 61.5
MD16G1117300 Malus domestica HOM05D004097 ORTHO05D005352 4.1e-117 426.8 403 59.8
Nitab4.5_0002174g0020 Nicotiana tabacum HOM05D004097 ORTHO05D005352 3.6e-113 413.7 339 58.7
unitig_22.g6408 Utricularia gibba HOM05D004097 ORTHO05D005352 2.2e-94 351.3 242 66.9
Cfa024667 Carpinus fangiana HOM05D004097 ORTHO05D005352 5.4e-85 320.1 532 35.7
BraA10t42875Z Brassica rapa HOM05D004097 ORTHO05D108425 8.1e-81 306.2 826 29.9
Cpa.g.sc43.13 Carica papaya HOM05D004097 ORTHO05D005352 4.8e-73 280.4 202 62.9
Nitab4.5_0005179g0020 Nicotiana tabacum HOM05D004097 ORTHO05D036916 4.2e-61 240.7 236 52.1
Oeu036881.1 Olea europaea HOM05D004097 ORTHO05D005352 3.9e-59 234.2 137 78.1
Ca_18056_v3 Cicer arietinum L. HOM05D004097 ORTHO05D005352 1.3e-54 219.2 167 62.9
RcHm_v2.0_Chr7g0216361 Rosa chinensis HOM05D004097 ORTHO05D005352 1.3e-54 219.2 195 59.5
Cpa.g.sc43.17 Carica papaya HOM05D004097 ORTHO05D116738 7.7e-47 193.4 102 85.3
TWI36G0648 Tripterygium wilfordii HOM05D004097 ORTHO05D005352 6.5e-46 190.3 119 73.9
PSO724G1248 Papaver somniferum HOM05D004097 ORTHO05D005352 4.5e-31 141.0 193 40.4
CAN.G49.23 Capsicum annuum HOM05D004097 ORTHO05D005352 2.2e-30 138.7 82 74.4
CAN.G49.22 Capsicum annuum HOM05D004097 ORTHO05D043419 1.7e-25 122.5 86 65.1
Cpa.g.sc43.15 Carica papaya HOM05D004097 ORTHO05D043419 5.3e-24 117.5 69 75.4
Psat3g154560 Pisum sativum HOM05D001399 ORTHO05D001670 9.4e-21 106.7 84 61.9
Actinidia15018 Actinidia chinensis HOM05D004097 ORTHO05D054282 1.6e-20 105.9 84 58.3
Solyc05g015250.2 Solanum lycopersicum HOM05D004097 ORTHO05D036916 3.0e-19 101.7 133 45.1
Actinidia15017 Actinidia chinensis HOM05D004097 ORTHO05D055553 2.6e-18 98.6 96 52.1
Sabra10G0046700 Salix brachista HOM05D004097 ORTHO05D005352 3.7e-17 94.7 45 91.1
Actinidia15016 Actinidia chinensis HOM05D004097 ORTHO05D005352 1.6e-15 89.4 61 65.6
Peaxi162Scf00128g01139 Petunia axillaris HOM05D004097 ORTHO05D036916 5.9e-15 87.4 91 51.6
Psat7g044200 Pisum sativum HOM05D003089 ORTHO05D003544 5.5e-13 80.9 59 67.8
TPR.G36369 Trifolium pratense HOM05D004097 ORTHO05D001670 1.2e-12 79.7 75 58.7
TAR626G1714 Trochodendron aralioides HOM05D000428 ORTHO05D009311 2.7e-12 78.6 76 55.3
TAR624G1259 Trochodendron aralioides HOM05D000428 ORTHO05D009311 4.7e-12 77.8 42 81.0
BcaB07g33265 Brassica carinata HOM05D004070 ORTHO05D032257 8.0e-12 77.0 98 43.9
BcaB07g33267 Brassica carinata HOM05D004070 ORTHO05D032257 1.0e-11 76.6 97 44.3
MBI03_g17125_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000104 1.0e-11 76.6 44 79.5


User provided reference genes

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