Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G4506 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.9e-195 685.3 403 100.0
FvH4_7g16920 Fragaria vesca HOM05D004552 ORTHO05D005501 7.9e-193 677.2 403 99.5
FAN01G0370 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.5e-191 672.9 403 99.0
FAN03G3426 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.0e-187 660.2 404 98.0
FAN06G3324 Fragaria x ananassa HOM05D004552 ORTHO05D005501 5.5e-186 654.4 389 99.2
RcHm_v2.0_Chr1g0360161 Rosa chinensis HOM05D004552 ORTHO05D005501 3.8e-171 605.1 406 87.7
Prupe.2G197600 Prunus persica HOM05D004552 ORTHO05D005501 5.1e-131 471.9 402 73.6
ClCG04G008790 Citrullus lanatus HOM05D004552 ORTHO05D005501 4.7e-129 465.3 408 66.9
Thecc.05G052700 Theobroma cacao HOM05D004552 ORTHO05D005501 1.7e-126 456.8 416 70.4
MELO3C014263.2 Cucumis melo HOM05D004552 ORTHO05D005501 6.4e-126 454.9 408 69.6
ClCG10G016170 Citrullus lanatus HOM05D004552 ORTHO05D005501 3.5e-124 449.1 400 67.8
CsaV3_4G024350 Cucumis sativus L. HOM05D004552 ORTHO05D005501 4.6e-124 448.7 408 69.4
RcHm_v2.0_Chr1g0361081 Rosa chinensis HOM05D004552 ORTHO05D005501 5.1e-123 445.3 409 67.7
Manes.08G002200 Manihot esculenta HOM05D004552 ORTHO05D005501 1.5e-122 443.7 415 69.4
TWI53G0358 Tripterygium wilfordii HOM05D004552 ORTHO05D005501 2.5e-122 443.0 423 63.1
Ciclev10011831m.g Citrus clementina HOM05D004552 ORTHO05D005501 2.1e-121 439.9 420 62.1
Cfa017496 Carpinus fangiana HOM05D004552 ORTHO05D005501 2.8e-121 439.5 404 66.3
Sed0010830 Sechium edule HOM05D004552 ORTHO05D005501 4.0e-120 435.6 408 64.2
Duzib106G1297 Durio zibethinus HOM05D004552 ORTHO05D005501 2.0e-119 433.3 411 69.6
Haze_20666 Corylus avellana HOM05D004552 ORTHO05D005501 7.6e-119 431.4 409 65.0
Dinv37242 Davidia involucrata HOM05D004552 ORTHO05D005501 2.2e-118 429.9 419 63.2
CiPaw.09G181100 Carya illinoinensis HOM05D004552 ORTHO05D005501 3.8e-118 429.1 411 68.4
FvH4_7g17650 Fragaria vesca HOM05D004552 ORTHO05D005501 1.4e-117 427.2 408 64.7
Manes.09G079900 Manihot esculenta HOM05D004552 ORTHO05D005501 1.6e-116 423.7 407 63.1
QL07p045485 Quercus lobata HOM05D004552 ORTHO05D005501 2.7e-116 422.9 414 64.5
PGR004G2024 Punica granatum HOM05D004552 ORTHO05D005501 3.5e-116 422.5 415 63.1
arahy.Tifrunner.gnm1.ann1.CZIV0N Arachis hypogaea HOM05D004552 ORTHO05D005501 6.0e-116 421.8 406 63.1
arahy.Tifrunner.gnm1.ann1.6MTV2V Arachis hypogaea HOM05D004552 ORTHO05D005501 1.3e-115 420.6 406 63.1
Potri.016G084200 Populus trichocarpa HOM05D004552 ORTHO05D005501 2.3e-115 419.9 410 67.6
arahy.Tifrunner.gnm1.ann1.LN9G9C Arachis hypogaea HOM05D004552 ORTHO05D005501 3.0e-115 419.5 406 62.8
arahy.Tifrunner.gnm1.ann1.URH0Q0 Arachis hypogaea HOM05D004552 ORTHO05D005501 1.5e-114 417.2 406 62.3
Ca_22379_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 4.3e-114 415.6 407 62.2
Ca_19605_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 3.6e-113 412.5 407 62.2
Actinidia19722 Actinidia chinensis HOM05D004552 ORTHO05D005501 4.8e-113 412.1 421 60.3
Lj3g0026232 Lotus japonicus HOM05D004552 ORTHO05D005501 1.8e-112 410.2 406 61.3
Gohir.A03G063400 Gossypium hirsutum HOM05D004552 ORTHO05D005501 2.4e-112 409.8 353 66.6
Lj5g0019559 Lotus japonicus HOM05D004552 ORTHO05D005501 3.1e-112 409.5 406 61.3
TPR.G33503 Trifolium pratense HOM05D004552 ORTHO05D005501 3.1e-112 409.5 407 61.4
MSTRG.16520 Avicennia marina HOM05D004552 ORTHO05D005501 4.0e-112 409.1 421 61.3
FAN03G1811 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.5e-111 407.1 406 65.8
FAN06G0991 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.5e-111 407.1 402 67.9
Medtr6g089780 Medicago truncatula HOM05D004552 ORTHO05D005501 2.6e-111 406.4 404 61.1
Medtr8g075790 Medicago truncatula HOM05D004552 ORTHO05D005501 7.6e-111 404.8 407 62.4
Oeu029550.1 Olea europaea HOM05D004552 ORTHO05D005501 7.6e-111 404.8 419 60.9
Lj4g0012826 Lotus japonicus HOM05D004552 ORTHO05D005501 1.7e-110 403.7 406 60.8
Oeu026072.1 Olea europaea HOM05D004552 ORTHO05D005501 1.7e-110 403.7 417 60.4
Gorai.003G108400 Gossypium raimondii HOM05D004552 ORTHO05D005501 2.2e-110 403.3 353 66.3
Atru.chr8.2543 Acer truncatum HOM05D004552 ORTHO05D005501 2.9e-110 402.9 420 61.7
Gohir.D03G102900 Gossypium hirsutum HOM05D004552 ORTHO05D005501 3.8e-110 402.5 353 66.3
Lalb_Chr05g0229841 Lupinus albus HOM05D004552 ORTHO05D005501 3.8e-110 402.5 407 60.7
Psat7g019080 Pisum sativum HOM05D004552 ORTHO05D005501 3.8e-110 402.5 424 59.7
Cc00_g23990 Coffea canephora HOM05D004552 ORTHO05D005501 4.9e-110 402.1 419 60.6
Hund08942 Selenicereus undatus HOM05D004552 ORTHO05D005501 6.4e-110 401.7 411 60.3
THA.LOC104823245 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 1.4e-109 400.6 436 61.0
TAR369G0596 Trochodendron aralioides HOM05D004552 ORTHO05D005501 2.1e-108 396.7 415 61.4
EL10Ac7g16819 Beta vulgaris HOM05D004552 ORTHO05D005501 2.7e-108 396.4 417 58.0
COL.COLO4_27097 Corchorus olitorius HOM05D004552 ORTHO05D005501 2.7e-108 396.4 340 67.6
Glyma.08G287300 Glycine max HOM05D004552 ORTHO05D005501 7.9e-108 394.8 405 62.5
Sopen02g031920 Solanum pennellii HOM05D004552 ORTHO05D005501 7.9e-108 394.8 409 60.1
Solyc02g087180.4 Solanum lycopersicum HOM05D004552 ORTHO05D005501 6.7e-107 391.7 409 59.7
CANSAT56G3582 Cannabis sativa HOM05D004552 ORTHO05D005501 1.5e-106 390.6 395 67.1
CSS0033785 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 1.9e-106 390.2 418 59.3
Nitab4.5_0008076g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 2.5e-106 389.8 419 59.9
Thhalv10013588m.g Eutrema salsugineum HOM05D004552 ORTHO05D005501 3.3e-106 389.4 439 61.7
Glyma.13G067700 Glycine max HOM05D004552 ORTHO05D005501 4.3e-106 389.0 402 62.4
VMungo0251G2800 Vigna mungo HOM05D004552 ORTHO05D005501 5.6e-106 388.7 411 60.6
Peaxi162Scf00569g00015 Petunia axillaris HOM05D004552 ORTHO05D005501 7.4e-106 388.3 416 60.8
Sp6g39730 Schrenkiella parvula HOM05D004552 ORTHO05D005501 9.6e-106 387.9 432 63.2
Manes.09G080009 Manihot esculenta HOM05D004552 ORTHO05D005501 1.6e-105 387.1 339 64.0
Nitab4.5_0006780g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 2.1e-105 386.7 419 58.9
A10p32880 Brassica napus HOM05D004552 ORTHO05D005501 2.8e-105 386.3 424 64.2
AUR62025361 Chenopodium quinoa HOM05D004552 ORTHO05D005501 2.8e-105 386.3 422 57.3
AUR62028362 Chenopodium quinoa HOM05D004552 ORTHO05D005501 2.8e-105 386.3 422 57.6
Nn1g07079 Nelumbo nucifera HOM05D004552 ORTHO05D005501 8.1e-105 384.8 424 62.5
Sc07g0006230 Simmondsia chinensis HOM05D004552 ORTHO05D005501 8.1e-105 384.8 407 62.9
BcaC06g32015 Brassica carinata HOM05D004552 ORTHO05D005501 4.0e-104 382.5 430 61.4
Rhsim10G0168100 Rhododendron simsii HOM05D004552 ORTHO05D005501 6.9e-104 381.7 421 58.2
C09p73810 Brassica napus HOM05D004552 ORTHO05D005501 9.0e-104 381.3 430 60.7
BolC9t60115H Brassica oleracea HOM05D004552 ORTHO05D005501 9.0e-104 381.3 430 60.7
DCAR_009290 Daucus carota HOM05D004552 ORTHO05D005501 9.0e-104 381.3 401 59.4
Rhsim11G0041500 Rhododendron simsii HOM05D004552 ORTHO05D005501 9.0e-104 381.3 421 58.0
Phvul.003G261400 Phaseolus vulgaris HOM05D004552 ORTHO05D005501 1.5e-103 380.6 403 61.8
CARHR210480 Cardamine hirsuta HOM05D004552 ORTHO05D005501 2.0e-103 380.2 434 63.1
Lj6g0002066 Lotus japonicus HOM05D004552 ORTHO05D005501 2.0e-103 380.2 403 58.1
Nitab4.5_0001952g0150 Nicotiana tabacum HOM05D004552 ORTHO05D005501 5.8e-103 378.6 411 58.6
Nitab4.5_0005206g0040 Nicotiana tabacum HOM05D004552 ORTHO05D005501 5.8e-103 378.6 411 59.6
Glyma.06G188800 Glycine max HOM05D004552 ORTHO05D005501 1.7e-102 377.1 405 60.5
Lj6g0014683 Lotus japonicus HOM05D004552 ORTHO05D005501 3.8e-102 375.9 326 65.6
CAN.G525.45 Capsicum annuum HOM05D004552 ORTHO05D005501 4.9e-102 375.6 416 58.9
DCAR_002493 Daucus carota HOM05D004552 ORTHO05D005501 1.4e-101 374.0 401 62.1
SalBow4G1233 Salvia bowleyana HOM05D004552 ORTHO05D005501 1.4e-101 374.0 412 60.2
Ah.14g084480 Amaranthus hybridus HOM05D004552 ORTHO05D005501 1.9e-101 373.6 418 54.8
CAN.G206.55 Capsicum annuum HOM05D004552 ORTHO05D005501 1.9e-101 373.6 412 62.1
AT5G02850 Arabidopsis thaliana HOM05D004552 ORTHO05D005501 2.4e-101 373.2 431 61.7
TPR.G27980 Trifolium pratense HOM05D004552 ORTHO05D005501 3.2e-101 372.9 328 64.9
Migut.K00511 Erythranthe guttata HOM05D004552 ORTHO05D005501 4.2e-101 372.5 421 60.1
Carub.0006s0165 Capsella rubella HOM05D004552 ORTHO05D005501 2.1e-100 370.2 436 61.9
PSO210G6420 Papaver somniferum HOM05D004552 ORTHO05D005501 2.1e-100 370.2 413 62.5
AL6G12120 Arabidopsis lyrata HOM05D004552 ORTHO05D005501 2.7e-100 369.8 432 60.9
Rhsim11G0041800 Rhododendron simsii HOM05D004552 ORTHO05D005501 2.7e-100 369.8 419 57.0
unitig_899.g15236 Utricularia gibba HOM05D004552 ORTHO05D005501 3.5e-100 369.4 419 58.2
Solyc04g014240.1 Solanum lycopersicum HOM05D004552 ORTHO05D005501 1.3e-99 367.5 419 62.1
PSO832G0086 Papaver somniferum HOM05D004552 ORTHO05D005501 1.8e-99 367.1 414 60.6
arahy.Tifrunner.gnm1.ann1.52IM1F Arachis hypogaea HOM05D004552 ORTHO05D005501 3.0e-99 366.3 318 66.4
Aa31LG1G22060 Aethionema arabicum HOM05D004552 ORTHO05D005501 3.9e-99 365.9 438 57.5
Sopen04g006350 Solanum pennellii HOM05D004552 ORTHO05D005501 7.4e-98 361.7 419 61.6
HanXRQChr05g0156781 Helianthus annuus HOM05D004552 ORTHO05D005501 2.1e-97 360.1 416 54.1
Sabra16G0091200 Salix brachista HOM05D004552 ORTHO05D005501 3.7e-97 359.4 339 66.1
Aqoxy4G02198 Aquilegia oxysepala HOM05D004552 ORTHO05D005501 2.4e-96 356.7 430 60.5
CDE04G3741 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 4.0e-96 355.9 405 56.0
Cc03_g15870 Coffea canephora HOM05D004552 ORTHO05D005501 1.5e-95 354.0 410 57.3
ECA246G2681 Erigeron canadensis HOM05D003206 ORTHO05D005207 1.3e-94 350.9 419 55.6
Eucgr.J03059 Eucalyptus grandis HOM05D004552 ORTHO05D005501 2.2e-94 350.1 442 60.0
PGSC0003DMG400000510 Solanum tuberosum HOM05D004552 ORTHO05D005501 4.9e-94 349.0 340 63.2
Lsat_1_v5_gn_5_8941 Lactuca sativa HOM05D004552 ORTHO05D005501 1.4e-93 347.4 424 50.5
SHI12593 Sapria himalayana HOM05D004552 ORTHO05D005501 3.2e-93 346.3 401 54.1
Lj6g0013650 Lotus japonicus HOM05D004552 ORTHO05D005501 3.9e-91 339.3 403 56.8
SGA_v2.0_scaffold204G41624 Striga asiatica HOM05D004552 ORTHO05D005501 1.9e-90 337.0 420 55.5
Psat4g100360 Pisum sativum HOM05D004552 ORTHO05D005501 3.3e-90 336.3 352 61.1
vmacro04719 Vaccinium macrocarpon HOM05D004552 ORTHO05D005501 4.3e-90 335.9 331 64.0
MBI18_g25517_MAGBIO Magnolia biondii HOM05D004552 ORTHO05D005501 2.3e-83 313.5 348 56.6
FAN01G0473 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.8e-80 303.9 399 53.4
PSO675G1725 Papaver somniferum HOM05D004552 ORTHO05D005501 7.2e-77 292.0 356 52.8
HPP92_012944 Vanilla planifolia HOM05D004552 ORTHO05D005501 9.4e-77 291.6 335 53.7
SGA_v2.0_scaffold94G28661 Striga asiatica HOM05D004552 ORTHO05D005501 3.6e-76 289.7 352 57.1
Os09g0540500 Oryza sativa ssp. japonica HOM05D004552 ORTHO05D005501 4.5e-71 272.7 418 47.4
ATR0950G002 Amborella trichopoda HOM05D004552 ORTHO05D005501 2.0e-66 257.3 371 50.1
Zm00001eb103820 Zea mays HOM05D004552 ORTHO05D005501 2.8e-65 253.4 437 43.5
ATR0594G066 Amborella trichopoda HOM05D004552 ORTHO05D005501 9.1e-64 248.4 369 49.3
SEGI_01207 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 1.3e-57 228.0 370 45.9
CDE07G0444 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 2.8e-57 226.9 290 53.1
RhsimUnG0119000 Rhododendron simsii HOM05D004552 ORTHO05D005501 9.1e-56 221.9 251 57.4
A03p00930 Brassica napus HOM05D004552 ORTHO05D005501 3.6e-52 209.9 212 58.5
FvH4_6g20640 Fragaria vesca HOM05D004552 ORTHO05D005501 2.4e-48 197.2 249 50.6
BcaB01g05872 Brassica carinata HOM05D004552 ORTHO05D005501 4.5e-47 193.0 285 54.0
FAN14G1867 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.8e-44 183.7 174 57.5
CSS0042772 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 4.0e-43 179.9 223 52.5
C03p01200 Brassica napus HOM05D004552 ORTHO05D005501 7.5e-42 175.6 266 48.5
BolC3t12680H Brassica oleracea HOM05D004552 ORTHO05D005501 7.5e-42 175.6 266 48.5
THA.LOC104827455 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 4.9e-41 172.9 189 56.6
Mapoly0007s0084 Marchantia polymorpha HOM05D004552 ORTHO05D005501 1.8e-40 171.0 385 37.7
SEGI_11500 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 2.3e-38 164.1 326 42.6
Pp3c14_11490 Physcomitrium patens HOM05D004552 ORTHO05D005501 6.6e-38 162.5 360 37.8
AagrBONN_evm.TU.Sc2ySwM_362.1766 Anthoceros agrestis HOM05D004552 ORTHO05D005501 5.2e-35 152.9 393 36.1
Actinidia11233 Actinidia chinensis HOM05D004552 ORTHO05D005501 1.8e-32 144.4 350 40.3
BraA03t09475Z Brassica rapa HOM05D004552 ORTHO05D005501 6.6e-30 136.0 189 45.0
VMungo0647G0506 Vigna mungo HOM05D004552 ORTHO05D005501 1.1e-29 135.2 110 67.3
BraA10t45325Z Brassica rapa HOM05D001414 ORTHO05D000619 2.0e-26 124.4 152 55.9
Lsat_1_v5_gn_8_95200 Lactuca sativa HOM05D004552 ORTHO05D005501 9.8e-26 122.1 106 62.3
PGSC0003DMG400023633 Solanum tuberosum HOM05D004552 ORTHO05D005501 4.6e-23 113.2 226 40.7
CBR_g38095 Chara braunii HOM05D004552 ORTHO05D005501 1.4e-19 101.7 249 30.1
AagrBONN_evm.TU.Sc2ySwM_344.2458 Anthoceros agrestis HOM05D004552 ORTHO05D005501 7.3e-13 79.3 213 27.2
Lj3E543T1 Lonicera japonica HOM05D004552 ORTHO05D005501 2.2e-09 67.8 120 49.2


User provided reference genes

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