Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G4186 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 5009.9 2559 100.0
FAN03G1314 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 4746.4 2455 97.1
FAN10G0319 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 4721.0 2446 97.5
FAN10G1078 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 4721.0 2446 97.1
FvH4_7g32380 Fragaria vesca HOM05D004333 ORTHO05D005363 0.0e+00 4707.5 2446 97.9
FAN01G1860 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 4473.3 2444 93.5
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 4457.5 2444 93.2
RcHm_v2.0_Chr1g0381961 Rosa chinensis HOM05D004333 ORTHO05D005363 0.0e+00 4341.6 2455 88.7
Prupe.2G315300 Prunus persica HOM05D004333 ORTHO05D005363 0.0e+00 3783.0 2458 77.5
MD07G1295800 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 3725.3 2453 76.6
MD01G1225300 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 3578.9 2455 74.3
QL11p010725 Quercus lobata HOM05D004333 ORTHO05D005363 0.0e+00 3246.4 2473 65.3
Haze_00260 Corylus avellana HOM05D004333 ORTHO05D005363 0.0e+00 3231.0 2492 65.3
Cfa016195 Carpinus fangiana HOM05D004333 ORTHO05D005363 0.0e+00 3206.4 2448 65.7
CiPaw.05G200800 Carya illinoinensis HOM05D004333 ORTHO05D005363 0.0e+00 3129.7 2487 63.6
Dinv32109 Davidia involucrata HOM05D004333 ORTHO05D005363 0.0e+00 3087.0 2476 62.7
CANSAT21G1061 Cannabis sativa HOM05D004333 ORTHO05D005363 0.0e+00 3034.6 2467 62.5
Manes.01G037200 Manihot esculenta HOM05D004333 ORTHO05D005363 0.0e+00 3007.6 2470 61.5
TAR633G0098 Trochodendron aralioides HOM05D004333 ORTHO05D005363 0.0e+00 2935.2 2478 60.6
Thecc.03G204400 Theobroma cacao HOM05D004333 ORTHO05D005363 0.0e+00 2920.6 2467 59.8
Sabra15G0006500 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 2907.5 2477 59.7
Potri.015G008500 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 2902.5 2469 59.8
Potri.012G020000 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 2883.2 2466 59.4
TWI39G1232 Tripterygium wilfordii HOM05D004333 ORTHO05D005363 0.0e+00 2879.4 2468 58.7
Sabra12G0012900 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 2874.3 2468 58.9
Lj1C1024G7 Lonicera japonica HOM05D004333 ORTHO05D005363 0.0e+00 2872.8 2487 58.7
Actinidia08674 Actinidia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2865.5 2475 57.9
Gohir.D12G248500 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 2852.0 2468 58.7
Gorai.008G266500 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 2850.8 2468 58.5
Gohir.A12G247800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 2832.0 2480 58.1
Ciclev10000006m.g Citrus clementina HOM05D004333 ORTHO05D005363 0.0e+00 2831.2 2470 58.3
Glyma.04G232700 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 2810.4 2429 59.0
Ca_16734_v3 Cicer arietinum L. HOM05D004333 ORTHO05D005363 0.0e+00 2800.0 2459 57.7
Lj1g0003347 Lotus japonicus HOM05D004333 ORTHO05D005363 0.0e+00 2798.8 2457 58.2
arahy.Tifrunner.gnm1.ann1.F5KWPZ Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 2797.3 2466 58.4
TPR.G33633 Trifolium pratense HOM05D004333 ORTHO05D005363 0.0e+00 2795.0 2459 57.7
Glyma.06G132300 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 2792.3 2450 58.2
Medtr3g091940 Medicago truncatula HOM05D004333 ORTHO05D005363 0.0e+00 2788.1 2454 57.7
arahy.Tifrunner.gnm1.ann1.SMAV3X Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 2784.6 2503 57.5
Lalb_Chr08g0240011 Lupinus albus HOM05D004333 ORTHO05D005363 0.0e+00 2780.4 2464 57.9
vmacro06413 Vaccinium macrocarpon HOM05D004333 ORTHO05D005363 0.0e+00 2754.2 2401 57.4
Phvul.009G048100 Phaseolus vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 2741.8 2457 57.3
ClCG03G011440 Citrullus lanatus HOM05D004333 ORTHO05D005363 0.0e+00 2724.1 2466 56.7
Nn7g38041 Nelumbo nucifera HOM05D004333 ORTHO05D005363 0.0e+00 2711.4 2476 56.0
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 0.0e+00 2700.2 2428 56.3
Atru.chr12.2311 Acer truncatum HOM05D004333 ORTHO05D005363 0.0e+00 2682.1 2137 63.2
Sed0018682 Sechium edule HOM05D004333 ORTHO05D005363 0.0e+00 2679.4 2463 56.2
CsaV3_1G044960 Cucumis sativus L. HOM05D004333 ORTHO05D005363 0.0e+00 2664.0 2466 56.0
MELO3C010103.2 Cucumis melo HOM05D004333 ORTHO05D005363 0.0e+00 2654.8 2468 55.8
GSVIVG01038603001 Vitis vinifera HOM05D004333 ORTHO05D005363 0.0e+00 2644.0 2464 55.9
PGR142G3828 Punica granatum HOM05D004333 ORTHO05D005363 0.0e+00 2558.5 2473 54.1
C07p43390 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 2527.3 2473 53.1
DCAR_020346 Daucus carota HOM05D004333 ORTHO05D005363 0.0e+00 2526.5 2426 53.7
BolC7t44866H Brassica oleracea HOM05D004333 ORTHO05D005363 0.0e+00 2525.7 2478 53.0
AL6G35880 Arabidopsis lyrata HOM05D004333 ORTHO05D005363 0.0e+00 2525.4 2464 52.6
BraA06t26437Z Brassica rapa HOM05D004333 ORTHO05D005363 0.0e+00 2520.3 2477 52.8
AT5G24350 Arabidopsis thaliana HOM05D004333 ORTHO05D005363 0.0e+00 2518.4 2475 52.1
MBI06_g06689_MAGBIO Magnolia biondii HOM05D004333 ORTHO05D005363 0.0e+00 2514.6 2479 53.9
CARHR189090 Cardamine hirsuta HOM05D004333 ORTHO05D005363 0.0e+00 2511.5 2469 51.6
Cc02_g01170 Coffea canephora HOM05D004333 ORTHO05D005363 0.0e+00 2508.4 2465 52.1
Sopen03g022440 Solanum pennellii HOM05D004333 ORTHO05D005363 0.0e+00 2508.4 2479 52.5
A06p35170 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 2506.5 2475 52.7
Sp2g22970 Schrenkiella parvula HOM05D004333 ORTHO05D005363 0.0e+00 2497.2 2469 52.2
Thhalv10003502m.g Eutrema salsugineum HOM05D004333 ORTHO05D005363 0.0e+00 2486.8 2469 52.5
Hund21026 Selenicereus undatus HOM05D004333 ORTHO05D005363 0.0e+00 2484.1 2472 52.8
Aqoxy5G04259 Aquilegia oxysepala HOM05D004333 ORTHO05D005363 0.0e+00 2469.1 2477 52.0
Nitab4.5_0010367g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 2465.6 2440 52.9
Aa31LG11G3630 Aethionema arabicum HOM05D004333 ORTHO05D005363 0.0e+00 2459.9 2459 51.7
BcaNung01227 Brassica carinata HOM05D004333 ORTHO05D005363 0.0e+00 2454.9 2434 52.4
Peaxi162Scf00740g00426 Petunia axillaris HOM05D004333 ORTHO05D005363 0.0e+00 2448.7 2471 51.3
Nitab4.5_0008197g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 2446.8 2488 52.2
Migut.F00177 Erythranthe guttata HOM05D004333 ORTHO05D005363 0.0e+00 2441.4 2475 52.1
EL10Ac9g21652 Beta vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 2439.8 2469 51.3
Duzib068G0008 Durio zibethinus HOM05D004333 ORTHO05D005363 0.0e+00 2425.6 2465 51.8
THA.LOC104798907 Tarenaya hassleriana HOM05D004333 ORTHO05D005363 0.0e+00 2422.1 2467 50.7
AUR62010404 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 2419.0 2474 51.4
MSTRG.27005 Avicennia marina HOM05D004333 ORTHO05D005363 0.0e+00 2418.7 2471 51.2
SGA_v2.0_scaffold18G08437 Striga asiatica HOM05D004333 ORTHO05D005363 0.0e+00 2418.3 2493 51.3
AUR62016813 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 2408.3 2474 51.2
Ah.01g018970 Amaranthus hybridus HOM05D004333 ORTHO05D005363 0.0e+00 2397.5 2479 51.0
PSO063G3257 Papaver somniferum HOM05D004333 ORTHO05D005363 0.0e+00 2397.1 2483 51.3
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 0.0e+00 2395.5 2460 51.8
Sc19g0000760 Simmondsia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2386.7 2465 50.4
HanXRQChr04g0107121 Helianthus annuus HOM05D004333 ORTHO05D005363 0.0e+00 2383.6 2475 49.8
CSS0015753 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 2369.7 2111 57.9
CSS0025528 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 2364.7 2111 57.8
Lsat_1_v5_gn_9_49400 Lactuca sativa HOM05D004333 ORTHO05D005363 0.0e+00 2363.2 2476 49.6
Psat5g074840 Pisum sativum HOM05D004333 ORTHO05D005363 0.0e+00 2157.1 1870 58.1
ECA232G2446 Erigeron canadensis HOM05D004333 ORTHO05D005363 0.0e+00 2127.8 2294 48.9
CDE02G3740 Ceratophyllum demersum HOM05D004333 ORTHO05D005363 0.0e+00 2103.6 2474 46.2
ATR0697G293 Amborella trichopoda HOM05D004333 ORTHO05D005363 0.0e+00 2038.5 2458 45.5
Zm00001eb359130 Zea mays HOM05D004333 ORTHO05D005363 0.0e+00 1849.7 2508 42.1
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 0.0e+00 1808.9 1518 60.6
Gorai.006G202800 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 1775.4 1492 59.9
Gohir.A09G185800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1766.5 1492 59.9
Carub.0006s2218 Capsella rubella HOM05D004333 ORTHO05D005363 0.0e+00 1740.3 1650 54.5
unitig_0.g2452 Utricularia gibba HOM05D004333 ORTHO05D005363 0.0e+00 1738.8 2471 40.2
Cpa.g.c29767.1 Carica papaya HOM05D004333 ORTHO05D005363 0.0e+00 1675.6 1383 61.5
Solyc03g082680.4 Solanum lycopersicum HOM05D004333 ORTHO05D005363 0.0e+00 1484.9 1463 53.0
Gohir.D09G180800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1414.1 1132 62.2
CAN.G481.60 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1358.2 1386 51.8
Eucgr.D00250 Eucalyptus grandis HOM05D004333 ORTHO05D005363 0.0e+00 1300.8 1194 55.9
CAN.G481.57 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1273.5 1431 48.8
HPP92_002817 Vanilla planifolia HOM05D004333 ORTHO05D005363 0.0e+00 1260.7 1618 43.3
SalBow4G2088 Salvia bowleyana HOM05D004333 ORTHO05D005363 0.0e+00 1135.2 1080 54.4
Aa31LG11G3970 Aethionema arabicum HOM05D004333 ORTHO05D005363 5.8e-297 1025.8 1072 48.9
CAN.G481.56 Capsicum annuum HOM05D004333 ORTHO05D005363 5.8e-297 1025.8 1053 51.0
SHI08278 Sapria himalayana HOM05D004333 ORTHO05D005363 1.7e-288 997.7 1391 41.2
AagrBONN_evm.TU.Sc2ySwM_362.1567 Anthoceros agrestis HOM05D004333 ORTHO05D005363 2.4e-279 967.2 2547 28.7
VMungo1309G1648 Vigna mungo HOM05D004333 ORTHO05D005363 8.1e-267 925.6 936 50.9
Mapoly0143s0007 Marchantia polymorpha HOM05D004333 ORTHO05D005363 1.4e-263 914.8 2129 31.3
Psat0s2221g0080 Pisum sativum HOM05D004333 ORTHO05D005363 3.5e-246 857.1 888 51.5
Pp3c1_3140 Physcomitrium patens HOM05D004333 ORTHO05D005363 2.0e-241 841.3 2181 29.5
SEGI_24760 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 2.2e-235 821.2 1490 35.4
Eucgr.D00251 Eucalyptus grandis HOM05D004333 ORTHO05D005363 7.2e-223 779.6 801 49.8
Carub.0006s2217 Capsella rubella HOM05D004333 ORTHO05D005363 1.8e-221 775.0 801 47.3
CBR_g48777 Chara braunii HOM05D004333 ORTHO05D005363 3.0e-192 677.9 2237 26.1
SMO356G0059 Selaginella moellendorffii HOM05D004333 ORTHO05D005363 3.7e-179 634.4 830 42.2
Oeu001936.1 Olea europaea HOM05D004333 ORTHO05D005363 1.5e-172 612.5 578 51.9
Cpa.g.c45444 Carica papaya HOM05D004333 ORTHO05D005363 6.3e-126 457.6 324 66.0
Actinidia34248 Actinidia chinensis HOM05D004333 ORTHO05D005363 2.7e-121 442.2 408 53.7
CSS0044449 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 1.2e-116 426.8 468 49.8
CSS0041108 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 1.5e-116 426.4 473 48.0
Psat1g135480 Pisum sativum HOM05D004333 ORTHO05D005363 3.3e-111 408.7 260 75.8
SHI08285 Sapria himalayana HOM05D004333 ORTHO05D000009 3.2e-98 365.5 325 56.3
Actinidia34249 Actinidia chinensis HOM05D004333 ORTHO05D005363 7.0e-85 321.2 320 53.8
SEGI_07013 Sequoiadendron giganteum HOM05D004333 ORTHO05D000001 1.0e-83 317.4 433 42.5
CAN.G481.55 Capsicum annuum HOM05D004333 ORTHO05D005363 4.3e-82 312.0 384 43.5
SHI08286 Sapria himalayana HOM05D004333 ORTHO05D005363 2.4e-77 296.2 381 41.7
CAN.G481.58 Capsicum annuum HOM05D004333 ORTHO05D005363 6.4e-70 271.6 255 51.0
SEGI_10720 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 1.2e-65 257.3 483 34.6
Os12g0233600 Oryza sativa ssp. japonica HOM05D004333 ORTHO05D005363 1.2e-60 240.7 433 35.3
Psat0s3076g0080 Pisum sativum HOM05D004333 ORTHO05D001713 7.3e-58 231.5 150 76.7
Psat4g066600 Pisum sativum HOM05D004333 ORTHO05D005363 2.1e-57 229.9 277 49.1
Nitab4.5_0004178g0060 Nicotiana tabacum HOM05D004333 ORTHO05D005363 1.7e-54 220.3 367 38.7
Lj4g0026522 Lotus japonicus HOM05D004333 ORTHO05D005363 5.6e-50 205.3 146 68.5
Nitab4.5_0004178g0050 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.0e-47 196.8 267 46.4
Nitab4.5_0004178g0040 Nicotiana tabacum HOM05D004333 ORTHO05D005363 1.7e-46 193.7 219 48.9
CAN.G481.59 Capsicum annuum HOM05D004333 ORTHO05D005363 8.4e-46 191.4 122 74.6
SHI08279 Sapria himalayana HOM05D004333 ORTHO05D005363 4.8e-41 175.6 123 67.5
arahy.Tifrunner.gnm1.ann1.7A8JPA Arachis hypogaea HOM05D004333 ORTHO05D005363 9.0e-40 171.4 122 71.3
Psat1g100720 Pisum sativum HOM05D004333 ORTHO05D005363 1.5e-39 170.6 315 33.3
Psat1g176920 Pisum sativum HOM05D004333 ORTHO05D005363 3.2e-37 162.9 110 71.8
Cre09.g415400 Chlamydomonas reinhardtii HOM05D004333 ORTHO05D005363 4.6e-36 159.1 833 21.2
CAN.G3762.1 Capsicum annuum HOM05D004333 ORTHO05D005363 5.1e-35 155.6 242 36.0
Oeu001937.1 Olea europaea HOM05D004333 ORTHO05D005363 2.4e-32 146.7 192 46.9
Oeu049088.1 Olea europaea HOM05D004333 ORTHO05D005363 5.8e-31 142.1 100 69.0
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 1.3e-30 141.0 146 50.0
Nitab4.5_0004178g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 5.5e-29 135.6 276 30.4
Psat6g091080 Pisum sativum HOM05D004333 ORTHO05D005363 8.2e-25 121.7 139 46.0
Psat3g000280 Pisum sativum HOM05D002984 ORTHO05D005363 4.0e-24 119.4 106 52.8
BcaNung02039 Brassica carinata HOM05D004333 ORTHO05D005363 6.9e-24 118.6 193 42.5
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 4.5e-23 115.9 83 66.3
SHI08287 Sapria himalayana HOM05D004333 ORTHO05D005363 3.9e-19 102.8 151 44.4
Psat6g175840 Pisum sativum HOM05D006947 ORTHO05D005363 5.7e-18 99.0 120 43.3
Psat4g128000 Pisum sativum HOM05D002621 ORTHO05D004807 2.8e-17 96.7 115 44.3
Nitab4.5_0004178g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 1.5e-15 90.9 186 33.9
arahy.Tifrunner.gnm1.ann1.UK8Y7I Arachis hypogaea HOM05D004333 ORTHO05D005363 9.4e-13 81.6 127 36.2
Psat0s2975g0120 Pisum sativum HOM05D000832 ORTHO05D013522 1.6e-12 80.9 75 53.3
A02p40370 Brassica napus HOM05D004333 ORTHO05D005363 6.1e-12 79.0 97 44.3
ATR0697G222 Amborella trichopoda HOM05D004333 ORTHO05D038300 2.3e-11 77.0 100 39.0
RcHm_v2.0_Chr7g0191401 Rosa chinensis HOM05D015922 ORTHO05D346943 2.3e-11 77.0 58 65.5
RcHm_v2.0_Chr1g0362941 Rosa chinensis HOM05D000225 ORTHO05D002604 3.9e-11 76.3 47 83.0
FvH4_7g19030 Fragaria vesca HOM05D000225 ORTHO05D002604 5.1e-11 75.9 47 87.2
FAN10G3901 Fragaria x ananassa HOM05D000225 ORTHO05D002604 8.8e-11 75.1 47 89.4
FAN06G1928 Fragaria x ananassa HOM05D000225 ORTHO05D002604 1.8e-08 67.4 47 83.0
FvH4_3g22840 Fragaria vesca HOM05D003404 ORTHO05D004052 5.3e-08 65.9 163 34.4
Nitab4.5_0004178g0070 Nicotiana tabacum HOM05D004333 ORTHO05D005363 1.2e-07 64.7 73 43.8
COL.COLO4_19568 Corchorus olitorius HOM05D005366 ORTHO05D006323 1.5e-07 64.3 42 76.2
SHI08288 Sapria himalayana HOM05D003057 ORTHO05D003904 4.5e-07 62.8 56 55.4
FvH4_7g04481 Fragaria vesca HOM05D020505 ORTHO05D198652 7.7e-07 62.0 52 61.5
Psat0s2975g0040 Pisum sativum HOM05D000832 ORTHO05D000900 1.3e-06 61.2 52 53.8
Psat0s2975g0200 Pisum sativum HOM05D000832 ORTHO05D019229 1.3e-06 61.2 52 53.8
Psat0s3955g0040 Pisum sativum HOM05D000832 ORTHO05D000900 1.3e-06 61.2 52 53.8
BcaC03g17980 Brassica carinata HOM05D004333 ORTHO05D005363 2.2e-06 60.5 123 33.3
Nitab4.5_0004178g0030 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.2e-06 60.5 47 48.9


User provided reference genes

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