Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G3857 Fragaria x ananassa HOM05D004730 ORTHO05D005705 4.2e-300 1033.9 510 100.0
FvH4_7g16330 Fragaria vesca HOM05D004730 ORTHO05D005705 1.2e-299 1032.3 510 99.8
FAN06G4548 Fragaria x ananassa HOM05D004730 ORTHO05D005705 6.1e-299 1030.0 510 99.6
FAN03G1043 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.2e-293 1011.5 511 98.4
FAN10G2003 Fragaria x ananassa HOM05D004730 ORTHO05D005705 6.5e-293 1010.0 509 98.2
RcHm_v2.0_Chr1g0359341 Rosa chinensis HOM05D004730 ORTHO05D005705 3.1e-287 991.1 511 96.5
Prupe.2G187200 Prunus persica HOM05D004730 ORTHO05D005705 2.5e-276 954.9 506 91.9
FAN10G3709 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.0e-273 945.3 509 93.1
MD07G1148700 Malus domestica HOM05D004730 ORTHO05D005705 2.9e-264 914.8 509 89.4
Ciclev10019746m.g Citrus clementina HOM05D004730 ORTHO05D005705 1.9e-252 875.5 507 84.8
MD01G1079900 Malus domestica HOM05D004730 ORTHO05D005705 6.8e-250 867.1 507 85.2
Lalb_Chr21g0314351 Lupinus albus HOM05D004730 ORTHO05D005705 8.4e-248 860.1 501 85.6
Nn1g01877 Nelumbo nucifera HOM05D004730 ORTHO05D005705 8.4e-248 860.1 515 83.7
Atru.chr5.659 Acer truncatum HOM05D004730 ORTHO05D005705 1.9e-247 859.0 507 84.8
GSVIVG01027092001 Vitis vinifera HOM05D004730 ORTHO05D005705 1.9e-247 859.0 513 83.4
Lj3g0019549 Lotus japonicus HOM05D004730 ORTHO05D005705 3.2e-247 858.2 506 84.4
TPR.G9866 Trifolium pratense HOM05D004730 ORTHO05D005705 5.6e-244 847.4 511 83.4
Cfa003807 Carpinus fangiana HOM05D004730 ORTHO05D005705 4.7e-243 844.3 503 82.7
Medtr3g018770 Medicago truncatula HOM05D004730 ORTHO05D005705 4.7e-243 844.3 504 83.7
Glyma.11G153900 Glycine max HOM05D004730 ORTHO05D005705 1.4e-242 842.8 501 83.8
Thecc.01G343400 Theobroma cacao HOM05D004730 ORTHO05D005705 1.4e-242 842.8 508 82.5
Glyma.04G141000 Glycine max HOM05D004730 ORTHO05D005705 1.7e-240 835.9 505 83.2
Gorai.004G152100 Gossypium raimondii HOM05D004730 ORTHO05D005705 2.9e-240 835.1 514 81.1
PGR031G3931 Punica granatum HOM05D004730 ORTHO05D005705 3.8e-240 834.7 509 81.1
Potri.002G170100 Populus trichocarpa HOM05D004730 ORTHO05D005705 5.4e-239 830.9 508 81.7
Gohir.D08G146500 Gossypium hirsutum HOM05D004730 ORTHO05D005705 7.1e-239 830.5 514 80.7
Gohir.A08G125600 Gossypium hirsutum HOM05D004730 ORTHO05D005705 6.0e-238 827.4 517 80.1
MELO3C022308.2 Cucumis melo HOM05D004730 ORTHO05D005705 1.3e-237 826.2 513 82.1
Duzib138G0598 Durio zibethinus HOM05D004730 ORTHO05D005705 5.1e-237 824.3 500 81.2
vmacro13156 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 4.3e-236 821.2 514 80.0
CsaV3_6G008300 Cucumis sativus L. HOM05D004730 ORTHO05D005705 1.6e-235 819.3 501 82.4
VMungo1080G1812 Vigna mungo HOM05D004730 ORTHO05D005705 3.6e-235 818.1 484 84.5
DCAR_005384 Daucus carota HOM05D004730 ORTHO05D005705 3.1e-234 815.1 517 79.3
CANSAT56G1965 Cannabis sativa HOM05D004730 ORTHO05D005705 4.0e-234 814.7 508 80.5
FAN01G1335 Fragaria x ananassa HOM05D004730 ORTHO05D005705 4.5e-233 811.2 413 97.8
Nitab4.5_0000258g0150 Nicotiana tabacum HOM05D004730 ORTHO05D005705 4.5e-233 811.2 512 79.9
Rhsim07G0004700 Rhododendron simsii HOM05D004730 ORTHO05D005705 5.8e-233 810.8 530 77.9
arahy.Tifrunner.gnm1.ann1.DU0G1C Arachis hypogaea HOM05D004730 ORTHO05D005705 7.6e-233 810.4 529 78.6
THA.LOC104817359 Tarenaya hassleriana HOM05D004730 ORTHO05D005705 1.7e-232 809.3 508 79.3
Eucgr.D02369 Eucalyptus grandis HOM05D004730 ORTHO05D005705 3.8e-232 808.1 508 79.3
Phvul.005G029900 Phaseolus vulgaris HOM05D004730 ORTHO05D005705 1.1e-231 806.6 481 83.6
Lsat_1_v5_gn_3_139961 Lactuca sativa HOM05D004730 ORTHO05D005705 2.7e-230 802.0 488 82.4
Actinidia10133 Actinidia chinensis HOM05D004730 ORTHO05D005705 3.5e-230 801.6 494 82.2
Haze_15648 Corylus avellana HOM05D004730 ORTHO05D005705 7.9e-230 800.4 522 77.8
Sed0022953 Sechium edule HOM05D004730 ORTHO05D005705 3.0e-229 798.5 511 80.0
SalBow3G2618 Salvia bowleyana HOM05D004730 ORTHO05D005705 6.7e-229 797.3 513 78.2
SGA_v2.0_scaffold5G03013 Striga asiatica HOM05D004730 ORTHO05D005705 2.1e-227 792.3 498 80.3
Cc02_g39260 Coffea canephora HOM05D004730 ORTHO05D005705 2.8e-227 792.0 513 78.8
Sopen05g028800 Solanum pennellii HOM05D004730 ORTHO05D005705 2.8e-227 792.0 513 77.8
PGSC0003DMG400017986 Solanum tuberosum HOM05D004730 ORTHO05D005705 2.8e-227 792.0 512 77.9
Solyc05g050390.4 Solanum lycopersicum HOM05D004730 ORTHO05D005705 4.8e-227 791.2 513 77.8
CAN.G239.1 Capsicum annuum HOM05D004730 ORTHO05D005705 6.2e-227 790.8 515 77.7
Aqoxy2G00449 Aquilegia oxysepala HOM05D004730 ORTHO05D005705 1.4e-226 789.6 505 79.2
Hund16708 Selenicereus undatus HOM05D004730 ORTHO05D005705 9.0e-226 786.9 525 75.6
Peaxi162Scf00403g00522 Petunia axillaris HOM05D004730 ORTHO05D005705 3.4e-225 785.0 515 77.7
MBI06_g08459_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.3e-224 783.1 493 79.3
Thhalv10005894m.g Eutrema salsugineum HOM05D004730 ORTHO05D005705 1.7e-224 782.7 500 77.0
Sp5g01680 Schrenkiella parvula HOM05D004730 ORTHO05D005705 6.4e-224 780.8 498 77.7
COL.COLO4_06293 Corchorus olitorius HOM05D004730 ORTHO05D005705 1.1e-223 780.0 466 83.7
CSS0011474 Camellia sinensis var. sinensis HOM05D004730 ORTHO05D005705 2.4e-223 778.9 509 77.4
Nitab4.5_0004506g0070 Nicotiana tabacum HOM05D004730 ORTHO05D005705 2.1e-222 775.8 512 77.1
PSO339G2575 Papaver somniferum HOM05D004730 ORTHO05D005705 4.6e-222 774.6 503 78.1
Migut.B01859 Erythranthe guttata HOM05D004730 ORTHO05D005705 1.3e-221 773.1 515 76.5
MSTRG.17337 Avicennia marina HOM05D004730 ORTHO05D005705 3.0e-221 771.9 493 80.1
Carub.0003s3432 Capsella rubella HOM05D004730 ORTHO05D005705 3.0e-221 771.9 503 75.9
CiPaw.01G075800 Carya illinoinensis HOM05D004730 ORTHO05D005705 3.9e-221 771.5 455 85.1
ECA248G0182 Erigeron canadensis HOM05D004730 ORTHO05D005705 3.9e-221 771.5 522 77.0
Carub.0005s2846 Capsella rubella HOM05D004730 ORTHO05D005705 6.7e-221 770.8 500 76.2
Sabra02G0142200 Salix brachista HOM05D004730 ORTHO05D005705 3.3e-220 768.5 545 72.8
Oeu015369.3 Olea europaea HOM05D004730 ORTHO05D005705 1.5e-217 759.6 546 72.2
CARHR172020 Cardamine hirsuta HOM05D004730 ORTHO05D005705 3.4e-217 758.4 502 74.9
AUR62023469 Chenopodium quinoa HOM05D004730 ORTHO05D005705 3.4e-217 758.4 513 74.9
Lj7C501G3 Lonicera japonica HOM05D004730 ORTHO05D005705 1.0e-216 756.9 591 69.0
AL5G44220 Arabidopsis lyrata HOM05D004730 ORTHO05D005705 3.8e-216 755.0 503 74.6
arahy.Tifrunner.gnm1.ann1.EBD5YY Arachis hypogaea HOM05D004730 ORTHO05D005705 3.8e-216 755.0 514 76.5
PSO210G5634 Papaver somniferum HOM05D004730 ORTHO05D005705 7.1e-215 750.7 503 75.9
C06p27700 Brassica napus HOM05D004730 ORTHO05D005705 2.1e-214 749.2 496 75.6
C06p27860 Brassica napus HOM05D004730 ORTHO05D005705 2.1e-214 749.2 496 75.6
Aa31LG10G15710 Aethionema arabicum HOM05D004730 ORTHO05D005705 7.9e-214 747.3 501 73.9
EL10Ac1g00278 Beta vulgaris HOM05D004730 ORTHO05D005705 3.9e-213 745.0 510 73.9
Sc23g0002110 Simmondsia chinensis HOM05D004730 ORTHO05D005705 6.7e-213 744.2 478 77.8
Ah.05g179630 Amaranthus hybridus HOM05D004730 ORTHO05D005705 1.5e-212 743.0 511 74.4
Sc01g0002740 Simmondsia chinensis HOM05D004730 ORTHO05D005705 4.3e-212 741.5 499 74.5
BolC6t37941H Brassica oleracea HOM05D004730 ORTHO05D005705 1.4e-210 736.5 518 72.4
HanXRQChr11g0353001 Helianthus annuus HOM05D004730 ORTHO05D005705 2.0e-209 732.6 490 76.9
Manes.01G246700 Manihot esculenta HOM05D004730 ORTHO05D005705 2.0e-209 732.6 431 85.4
BcaC08g45152 Brassica carinata HOM05D004730 ORTHO05D005705 2.1e-206 722.6 509 72.7
ATR0213G028 Amborella trichopoda HOM05D004730 ORTHO05D005705 7.4e-204 714.1 510 71.6
Duzib133G1016 Durio zibethinus HOM05D004730 ORTHO05D005705 1.1e-202 710.3 508 71.9
TWI23G0180 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 1.5e-201 706.4 510 71.0
Aa31LG1G27820 Aethionema arabicum HOM05D004730 ORTHO05D005705 4.5e-201 704.9 504 70.8
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 1.7e-200 703.0 463 76.5
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 1.9e-199 699.5 463 76.0
TWI59G0293 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 2.5e-199 699.1 516 69.4
unitig_62.g23797 Utricularia gibba HOM05D004730 ORTHO05D005705 7.9e-198 694.1 503 71.6
PGR031G3051 Punica granatum HOM05D004730 ORTHO05D005705 3.8e-184 648.7 528 65.2
AUR62004484 Chenopodium quinoa HOM05D004730 ORTHO05D005705 1.9e-183 646.4 471 71.5
AT3G61710 Arabidopsis thaliana HOM05D004730 ORTHO05D005705 7.2e-183 644.4 430 74.7
HPP92_011453 Vanilla planifolia HOM05D004730 ORTHO05D005705 1.6e-182 643.3 507 65.7
CDE05G0988 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 1.8e-178 629.8 514 62.6
SEGI_06994 Sequoiadendron giganteum HOM05D004730 ORTHO05D005705 5.2e-173 611.7 544 57.7
Psat5g217520 Pisum sativum HOM05D004730 ORTHO05D005705 1.8e-170 603.2 376 80.9
Zm00001eb142950 Zea mays HOM05D004730 ORTHO05D005705 2.3e-168 596.3 492 63.4
Os01g0681400 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 2.5e-167 592.8 478 64.0
SHI13286 Sapria himalayana HOM05D004730 ORTHO05D005705 7.2e-167 591.3 451 68.5
Os03g0644000 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 4.7e-166 588.6 487 63.2
Dinv35110 Davidia involucrata HOM05D004730 ORTHO05D005705 2.0e-164 583.2 365 82.5
Oeu019761.1 Olea europaea HOM05D004730 ORTHO05D005705 7.0e-162 574.7 341 83.0
Pp3c10_4130 Physcomitrium patens HOM05D004730 ORTHO05D005705 3.5e-161 572.4 502 60.4
Dinv32581 Davidia involucrata HOM05D004730 ORTHO05D005705 3.8e-160 568.9 363 81.0
TAR374G0734 Trochodendron aralioides HOM05D004730 ORTHO05D005705 2.0e-156 556.6 365 78.1
ClCG06G002220 Citrullus lanatus HOM05D004730 ORTHO05D005705 7.5e-156 554.7 360 80.6
Os03g0258500 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 2.0e-153 546.6 469 61.6
vmacro12679 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 2.7e-153 546.2 392 72.7
Zm00001eb364100 Zea mays HOM05D004730 ORTHO05D005705 3.9e-152 542.3 486 58.4
Mapoly0091s0016 Marchantia polymorpha HOM05D004730 ORTHO05D005705 7.3e-151 538.1 520 55.0
Pp3c1_21510 Physcomitrium patens HOM05D004730 ORTHO05D005705 5.2e-149 531.9 498 56.8
CANSAT56G2405 Cannabis sativa HOM05D004730 ORTHO05D005705 3.2e-146 522.7 292 86.0
SMO114G0122 Selaginella moellendorffii HOM05D004730 ORTHO05D005705 1.4e-141 507.3 494 54.5
AagrBONN_evm.TU.Sc2ySwM_344.2008 Anthoceros agrestis HOM05D004730 ORTHO05D005705 2.7e-137 493.0 510 51.6
Cpa.g.sc96.6 Carica papaya HOM05D004730 ORTHO05D005705 3.3e-135 486.1 337 76.9
BolC6t37951H Brassica oleracea HOM05D004730 ORTHO05D005705 5.2e-133 478.8 357 70.6
Rhsim01G0172100 Rhododendron simsii HOM05D004730 ORTHO05D005705 3.5e-129 466.1 409 63.3
CBR_g66692 Chara braunii HOM05D004730 ORTHO05D005705 3.4e-116 422.9 459 48.4
MBI01_g34153_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 6.0e-113 412.1 468 52.6
Ca_26857_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 2.5e-111 406.8 316 68.7
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 1.9e-106 390.6 365 60.5
FAN01G0353 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.8e-93 347.4 168 98.8
TAR374G1455 Trochodendron aralioides HOM05D004730 ORTHO05D005705 1.4e-90 337.8 232 73.7
Actinidia20237 Actinidia chinensis HOM05D004730 ORTHO05D005705 9.4e-90 335.1 291 63.2
MBI01_g41444_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 6.3e-86 322.4 315 57.5
MBI06_g41841_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 2.1e-81 307.4 224 68.8
CARHR263800 Cardamine hirsuta HOM05D004730 ORTHO05D005705 8.8e-80 302.0 245 63.3
Cre01.g020264 Chlamydomonas reinhardtii HOM05D004730 ORTHO05D005705 4.7e-73 279.6 397 41.8
Ca_26830_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 6.7e-72 275.8 145 89.7
Cpa.g.sc96.5 Carica papaya HOM05D004730 ORTHO05D005705 4.5e-68 263.1 147 85.0
Actinidia20236 Actinidia chinensis HOM05D004730 ORTHO05D005705 1.6e-65 254.6 146 81.5
MCO03G136 Micromonas commoda HOM05D004730 ORTHO05D005705 9.7e-63 245.4 309 43.0
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 3.1e-61 240.4 205 65.4
PRCOL_00007095 Prasinoderma coloniale HOM05D004730 ORTHO05D005705 5.7e-55 219.5 327 41.6
Hma1.2p1_0295F.1_g116660 Hydrangea macrophylla HOM05D004730 ORTHO05D005705 3.4e-47 193.7 164 61.6
ATR0213G026 Amborella trichopoda HOM05D004730 ORTHO05D005705 3.3e-42 177.2 193 54.9
ATR0213G009 Amborella trichopoda HOM05D004730 ORTHO05D005705 1.2e-41 175.3 100 81.0
MBI01_g11796_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 2.9e-38 164.1 106 71.7
Ca_26856_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 2.9e-30 137.5 214 44.9
Cfa022403 Carpinus fangiana HOM05D004730 ORTHO05D005705 1.9e-29 134.8 334 29.6
arahy.Tifrunner.gnm1.ann1.PHUB4S Arachis hypogaea HOM05D004730 ORTHO05D005705 3.2e-29 134.0 68 89.7
CDE08G1494 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 4.6e-20 103.6 78 65.4
MBI10_g27627_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D017720 1.5e-15 88.6 65 67.7
GSVIVG01027089001 Vitis vinifera HOM05D004730 ORTHO05D005705 9.9e-15 85.9 87 56.3
arahy.Tifrunner.gnm1.ann1.LSW4XK Arachis hypogaea HOM05D000092 ORTHO05D000042 6.4e-14 83.2 72 61.1
arahy.Tifrunner.gnm1.ann1.CLZ951 Arachis hypogaea HOM05D004730 ORTHO05D005705 4.6e-12 77.0 38 92.1
arahy.Tifrunner.gnm1.ann1.VTA1BU Arachis hypogaea HOM05D004730 ORTHO05D005705 5.6e-10 70.1 64 59.4
Nn1g06163 Nelumbo nucifera HOM05D004730 ORTHO05D005705 7.3e-10 69.7 44 65.9
MBI01_g41445_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 3.1e-08 64.3 46 58.7
CDE08G0541 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 1.5e-07 62.0 80 48.8


User provided reference genes

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