Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G3527 Fragaria x ananassa HOM05D003160 ORTHO05D010088 2.7e-104 382.1 203 100.0
FvH4_7g17180 Fragaria vesca HOM05D003160 ORTHO05D010088 4.9e-98 361.3 194 98.5
FAN03G1832 Fragaria x ananassa HOM05D003160 ORTHO05D010088 4.2e-94 348.2 194 95.4
FAN01G1829 Fragaria x ananassa HOM05D003160 ORTHO05D010088 8.0e-93 344.0 194 93.3
RcHm_v2.0_Chr1g0360571 Rosa chinensis HOM05D003160 ORTHO05D010088 6.6e-87 324.3 194 89.7
Prupe.2G193500 Prunus persica HOM05D003160 ORTHO05D010088 7.9e-48 194.5 195 62.6
MD01G1085700 Malus domestica HOM05D003160 ORTHO05D010088 8.7e-47 191.0 203 59.6
Manes.05G019500 Manihot esculenta HOM05D003160 ORTHO05D010088 2.1e-37 159.8 186 49.5
Duzib138G0284 Durio zibethinus HOM05D003160 ORTHO05D010088 4.8e-37 158.7 200 53.5
Potri.014G102100 Populus trichocarpa HOM05D003160 ORTHO05D010088 2.4e-36 156.4 209 46.9
QL08p046202 Quercus lobata HOM05D003160 ORTHO05D010088 3.4e-35 152.5 189 50.8
QL08p046209 Quercus lobata HOM05D003160 ORTHO05D010088 1.0e-34 151.0 189 50.3
QL08p046215 Quercus lobata HOM05D003160 ORTHO05D010088 1.0e-34 151.0 189 50.3
Sabra14G0075100 Salix brachista HOM05D003160 ORTHO05D010088 1.7e-34 150.2 212 44.3
TAR374G0774 Trochodendron aralioides HOM05D003160 ORTHO05D010088 1.1e-33 147.5 194 52.6
COL.COLO4_06252 Corchorus olitorius HOM05D003160 ORTHO05D010088 3.0e-31 139.4 198 46.0
Thecc.01G337400 Theobroma cacao HOM05D003160 ORTHO05D010088 6.7e-31 138.3 193 48.2
Dinv34236 Davidia involucrata HOM05D003160 ORTHO05D010088 3.3e-30 136.0 195 48.2
Aqoxy7G00032 Aquilegia oxysepala HOM05D003160 ORTHO05D010088 4.8e-29 132.1 191 47.6
Gohir.D12G117600 Gossypium hirsutum HOM05D003160 ORTHO05D010088 1.1e-28 131.0 194 47.9
CANSAT56G1121 Cannabis sativa HOM05D003160 ORTHO05D010088 1.4e-28 130.6 197 44.7
Gorai.008G127400 Gossypium raimondii HOM05D003160 ORTHO05D010088 6.9e-28 128.3 194 46.9
Ciclev10021230m.g Citrus clementina HOM05D003160 ORTHO05D010088 1.5e-27 127.1 193 47.7
Gohir.A12G114100 Gossypium hirsutum HOM05D003160 ORTHO05D010088 2.0e-27 126.7 193 45.6
MELO3C006001.2 Cucumis melo HOM05D003160 ORTHO05D010088 3.4e-27 125.9 184 46.2
Nn1g00361 Nelumbo nucifera HOM05D000716 ORTHO05D004822 7.6e-27 124.8 189 42.3
FAN06G5059 Fragaria x ananassa HOM05D003160 ORTHO05D010088 3.8e-26 122.5 66 97.0
Sopen05g028910 Solanum pennellii HOM05D003160 ORTHO05D010088 1.9e-25 120.2 196 41.3
PGSC0003DMG400007007 Solanum tuberosum HOM05D003160 ORTHO05D010088 1.9e-25 120.2 190 43.2
ClCG05G000620 Citrullus lanatus HOM05D001628 ORTHO05D001568 2.5e-25 119.8 182 45.6
TWI59G0107 Tripterygium wilfordii HOM05D003160 ORTHO05D010088 1.2e-24 117.5 204 44.1
PSO384G0028 Papaver somniferum HOM05D003160 ORTHO05D010088 4.6e-24 115.5 213 42.3
Cpa.g.sc96.69 Carica papaya HOM05D010811 ORTHO05D010088 1.1e-22 110.9 187 44.4
Lj7P497T13 Lonicera japonica HOM05D010811 ORTHO05D010088 3.3e-22 109.4 196 42.3
Solyc05g050500.1 Solanum lycopersicum HOM05D003160 ORTHO05D010088 7.4e-22 108.2 198 39.4
Atru.chr5.726 Acer truncatum HOM05D003160 ORTHO05D010088 1.3e-21 107.5 209 40.7
CANSAT56G3603 Cannabis sativa HOM05D003160 ORTHO05D010088 1.8e-20 103.6 194 40.2
Medtr7g117900 Medicago truncatula HOM05D003160 ORTHO05D010088 1.8e-20 103.6 189 41.8
Migut.B01904 Erythranthe guttata HOM05D003160 ORTHO05D010088 6.9e-20 101.7 205 39.0
CAN.G360.9 Capsicum annuum HOM05D003160 ORTHO05D010088 9.0e-20 101.3 191 38.7
CsaV3_3G007840 Cucumis sativus L. HOM05D000126 ORTHO05D003017 1.2e-19 100.9 179 40.8
Ca_09526_v3 Cicer arietinum L. HOM05D003160 ORTHO05D010088 1.5e-19 100.5 205 39.0
Lalb_Chr15g0076361 Lupinus albus HOM05D003160 ORTHO05D010088 4.5e-19 99.0 187 38.5
Sc23g0001970 Simmondsia chinensis HOM05D003160 ORTHO05D010088 4.5e-19 99.0 193 38.3
Glyma.19G257900 Glycine max HOM05D003160 ORTHO05D010088 5.9e-19 98.6 194 39.2
Nitab4.5_0003865g0070 Nicotiana tabacum HOM05D003160 ORTHO05D010088 6.5e-18 95.1 210 39.5
arahy.Tifrunner.gnm1.ann1.0W8RKK Arachis hypogaea HOM05D010811 ORTHO05D010088 1.4e-17 94.0 190 38.4
TPR.G4697 Trifolium pratense HOM05D003160 ORTHO05D010088 1.4e-17 94.0 187 39.0
Sed0027763 Sechium edule HOM05D003160 ORTHO05D010088 2.5e-17 93.2 181 42.0
SalBow3G1544 Salvia bowleyana HOM05D003160 ORTHO05D010088 4.2e-17 92.4 184 37.0
SalBow3G2702 Salvia bowleyana HOM05D003160 ORTHO05D010088 4.2e-17 92.4 184 37.0
Lj1g0008335 Lotus japonicus HOM05D003160 ORTHO05D010088 7.2e-17 91.7 188 35.6
MBI12_g03929_MAGBIO Magnolia biondii HOM05D002361 ORTHO05D002843 1.2e-16 90.9 212 34.4
ECA236G4264 Erigeron canadensis HOM05D003160 ORTHO05D010088 1.6e-16 90.5 207 34.8
arahy.Tifrunner.gnm1.ann1.ZR3V1T Arachis hypogaea HOM05D010811 ORTHO05D010088 2.1e-16 90.1 190 37.9
VMungo0540G0853 Vigna mungo HOM05D003160 ORTHO05D010088 2.7e-16 89.7 190 42.1
Eucgr.E00026 Eucalyptus grandis HOM05D003160 ORTHO05D010088 7.9e-16 88.2 199 35.7
SGA_v2.0_scaffold5G03046 Striga asiatica HOM05D003160 ORTHO05D010088 2.3e-15 86.7 177 36.2
Phvul.006G115400 Phaseolus vulgaris HOM05D003160 ORTHO05D010088 5.1e-15 85.5 198 37.4
Sed0001592 Sechium edule HOM05D003160 ORTHO05D010088 2.0e-14 83.6 182 37.4
DCAR_002990 Daucus carota HOM05D003160 ORTHO05D000125 6.3e-13 78.6 149 38.9
Pp3c23_11680 Physcomitrium patens HOM05D003160 ORTHO05D005967 8.2e-13 78.2 124 34.7
Psat3g001520 Pisum sativum HOM05D003160 ORTHO05D010088 8.2e-13 78.2 112 42.0
Nitab4.5_0000258g0330 Nicotiana tabacum HOM05D003160 ORTHO05D010088 3.1e-12 76.3 208 36.1
Aa31LG5G1040 Aethionema arabicum HOM05D010811 ORTHO05D010088 9.1e-12 74.7 193 33.7
AagrBONN_evm.TU.Sc2ySwM_362.1478 Anthoceros agrestis HOM05D003160 ORTHO05D005967 2.0e-11 73.6 110 33.6
SEGI_06406 Sequoiadendron giganteum HOM05D003160 ORTHO05D005967 7.7e-11 71.6 196 30.6
Sp6g01230 Schrenkiella parvula HOM05D010811 ORTHO05D010088 1.0e-10 71.2 194 35.1
Pp3c24_12520 Physcomitrium patens HOM05D003160 ORTHO05D005967 2.2e-10 70.1 124 33.9
CARHR249440 Cardamine hirsuta HOM05D010811 ORTHO05D010088 6.5e-10 68.6 193 33.2
Lalb_Chr07g0183411 Lupinus albus HOM05D003160 ORTHO05D005967 1.1e-09 67.8 193 28.0
BcaB05g23969 Brassica carinata HOM05D010811 ORTHO05D010088 1.4e-09 67.4 193 35.2
Pp3c23_6060 Physcomitrium patens HOM05D003160 ORTHO05D005967 1.4e-09 67.4 124 29.8
HPP92_004308 Vanilla planifolia HOM05D003160 ORTHO05D005967 1.9e-09 67.0 110 26.4
Atru.chr13.1881 Acer truncatum HOM05D003160 ORTHO05D005967 4.2e-09 65.9 161 27.3
CDE02G4562 Ceratophyllum demersum HOM05D003160 ORTHO05D005967 4.2e-09 65.9 119 24.4
EL10Ac6g13555 Beta vulgaris HOM05D003160 ORTHO05D005967 5.5e-09 65.5 110 26.4
THA.LOC104816203 Tarenaya hassleriana HOM05D003160 ORTHO05D005967 1.2e-08 64.3 117 27.4
Gohir.D01G028200 Gossypium hirsutum HOM05D003160 ORTHO05D005967 1.6e-08 63.9 154 26.6
Mapoly0006s0050 Marchantia polymorpha HOM05D003160 ORTHO05D005967 1.6e-08 63.9 138 30.4
Gorai.002G037600 Gossypium raimondii HOM05D003160 ORTHO05D005967 2.1e-08 63.5 154 26.6
THA.LOC104806778 Tarenaya hassleriana HOM05D003160 ORTHO05D005967 3.6e-08 62.8 117 26.5
Lsat_1_v5_gn_1_4801 Lactuca sativa HOM05D003160 ORTHO05D005967 4.7e-08 62.4 110 26.4
Ciclev10002351m.g Citrus clementina HOM05D003160 ORTHO05D005967 6.1e-08 62.0 110 22.7
HanXRQChr10g0278581 Helianthus annuus HOM05D003160 ORTHO05D005967 6.1e-08 62.0 119 26.9
RcHm_v2.0_Chr6g0272941 Rosa chinensis HOM05D003160 ORTHO05D005967 6.1e-08 62.0 115 27.8
SEGI_07127 Sequoiadendron giganteum HOM05D003160 ORTHO05D005967 6.1e-08 62.0 99 27.3
SEGI_11516 Sequoiadendron giganteum HOM05D003160 ORTHO05D005967 6.1e-08 62.0 99 27.3
AL6G52500 Arabidopsis lyrata HOM05D010811 ORTHO05D010088 7.9e-08 61.6 194 33.0
Gohir.A01G040600 Gossypium hirsutum HOM05D003160 ORTHO05D005967 7.9e-08 61.6 154 26.0
QL10p002938 Quercus lobata HOM05D003160 ORTHO05D005967 7.9e-08 61.6 107 26.2
Lsat_1_v5_gn_6_101941 Lactuca sativa HOM05D003160 ORTHO05D005967 1.0e-07 61.2 119 27.7
AT4G09650 Arabidopsis thaliana HOM05D003160 ORTHO05D005967 1.4e-07 60.8 110 28.2
Dinv13072 Davidia involucrata HOM05D003160 ORTHO05D005967 1.4e-07 60.8 112 24.1
MBI05_g36578_MAGBIO Magnolia biondii HOM05D003160 ORTHO05D005967 1.8e-07 60.5 110 23.6
Mapoly0173s0013 Marchantia polymorpha HOM05D003160 ORTHO05D005967 1.8e-07 60.5 119 31.9
Oeu001061.1 Olea europaea HOM05D003160 ORTHO05D005967 1.8e-07 60.5 126 23.8
Phvul.003G211100 Phaseolus vulgaris HOM05D003160 ORTHO05D005967 1.8e-07 60.5 110 27.3
AL6G43270 Arabidopsis lyrata HOM05D003160 ORTHO05D005967 2.3e-07 60.1 117 26.5
MELO3C025005.2 Cucumis melo HOM05D003160 ORTHO05D005967 2.3e-07 60.1 110 27.3
Sed0027822 Sechium edule HOM05D003160 ORTHO05D010088 2.3e-07 60.1 183 33.9
AT4G00895 Arabidopsis thaliana HOM05D010811 ORTHO05D010088 3.0e-07 59.7 195 32.8
MD17G1003000 Malus domestica HOM05D003160 ORTHO05D005967 3.0e-07 59.7 115 24.3
PGR102G2401 Punica granatum HOM05D003160 ORTHO05D005967 3.0e-07 59.7 156 26.9
HanXRQChr02g0043721 Helianthus annuus HOM05D003160 ORTHO05D005967 3.9e-07 59.3 172 26.2
A03p28680 Brassica napus HOM05D003160 ORTHO05D005967 5.1e-07 58.9 117 26.5
BraA03t12067Z Brassica rapa HOM05D003160 ORTHO05D005967 5.1e-07 58.9 117 26.5
CARHR260570 Cardamine hirsuta HOM05D003160 ORTHO05D005967 5.1e-07 58.9 117 28.2
ClCG08G002530 Citrullus lanatus HOM05D003160 ORTHO05D005967 5.1e-07 58.9 110 27.3
Glyma.17G130100 Glycine max HOM05D003160 ORTHO05D005967 5.1e-07 58.9 107 26.2
Sed0000690 Sechium edule HOM05D003160 ORTHO05D005967 5.1e-07 58.9 110 28.2
GSVIVG01001595001 Vitis vinifera HOM05D003160 ORTHO05D005967 5.1e-07 58.9 144 28.5
Dinv44718 Davidia involucrata HOM05D003160 ORTHO05D005967 6.7e-07 58.5 110 22.7
Eucgr.F04149 Eucalyptus grandis HOM05D003160 ORTHO05D005967 6.7e-07 58.5 166 25.3
Nitab4.5_0000425g0240 Nicotiana tabacum HOM05D003160 ORTHO05D005967 6.7e-07 58.5 110 26.4
Nitab4.5_0006745g0030 Nicotiana tabacum HOM05D003160 ORTHO05D005967 6.7e-07 58.5 119 24.4
SalBow7G2604 Salvia bowleyana HOM05D003160 ORTHO05D005967 6.7e-07 58.5 113 28.3
Ah.05g179250 Amaranthus hybridus HOM05D003160 ORTHO05D010088 1.1e-06 57.8 94 39.4
ATR0605G225 Amborella trichopoda HOM05D003160 ORTHO05D005967 1.1e-06 57.8 123 22.8
arahy.Tifrunner.gnm1.ann1.2I1I1C Arachis hypogaea HOM05D003160 ORTHO05D005967 1.1e-06 57.8 110 26.4
MSTRG.22135 Avicennia marina HOM05D003160 ORTHO05D005967 1.1e-06 57.8 110 25.5
CSS0043683 Camellia sinensis var. sinensis HOM05D003160 ORTHO05D005967 1.1e-06 57.8 110 25.5
Carub.0006s2810 Capsella rubella HOM05D003160 ORTHO05D005967 1.1e-06 57.8 117 25.6
CsaV3_6G002740 Cucumis sativus L. HOM05D003160 ORTHO05D005967 1.1e-06 57.8 110 26.4
BcaC01g04706 Brassica carinata HOM05D003160 ORTHO05D005967 1.5e-06 57.4 117 26.5
C03p34700 Brassica napus HOM05D003160 ORTHO05D005967 1.5e-06 57.4 117 26.5
BolC3t15780H Brassica oleracea HOM05D003160 ORTHO05D005967 1.5e-06 57.4 117 26.5
Thhalv10028838m.g Eutrema salsugineum HOM05D003160 ORTHO05D005967 1.5e-06 57.4 117 25.6
FvH4_2g12490 Fragaria vesca HOM05D003160 ORTHO05D005967 1.5e-06 57.4 115 25.2
FAN15G0653 Fragaria x ananassa HOM05D003160 ORTHO05D005967 1.5e-06 57.4 115 25.2
FAN24G0582 Fragaria x ananassa HOM05D003160 ORTHO05D005967 1.5e-06 57.4 115 25.2
BcaB01g02780 Brassica carinata HOM05D003160 ORTHO05D005967 2.0e-06 57.0 117 25.6
A09p29470 Brassica napus HOM05D003160 ORTHO05D005967 2.0e-06 57.0 117 25.6
BraA09t38512Z Brassica rapa HOM05D003160 ORTHO05D005967 2.0e-06 57.0 117 25.6
Ah.02g131050 Amaranthus hybridus HOM05D003160 ORTHO05D005967 2.6e-06 56.6 148 23.0
BcaB03g14186 Brassica carinata HOM05D003160 ORTHO05D005967 2.6e-06 56.6 107 27.1
Aa31LG9G14960 Aethionema arabicum HOM05D003160 ORTHO05D005967 3.3e-06 56.2 110 26.4
CAN.G47.5 Capsicum annuum HOM05D003160 ORTHO05D005967 3.3e-06 56.2 155 21.9
CiPaw.12G043000 Carya illinoinensis HOM05D003160 ORTHO05D005967 3.3e-06 56.2 107 23.4
MD10G1043200 Malus domestica HOM05D003160 ORTHO05D005967 3.3e-06 56.2 153 24.2
Sabra13G0099100 Salix brachista HOM05D003160 ORTHO05D005967 3.3e-06 56.2 107 28.0
Actinidia33169 Actinidia chinensis HOM05D003160 ORTHO05D005967 4.4e-06 55.8 110 22.7
BcaC04g20948 Brassica carinata HOM05D003160 ORTHO05D005967 4.4e-06 55.8 117 25.6
C09p37610 Brassica napus HOM05D003160 ORTHO05D005967 4.4e-06 55.8 117 25.6
BolC9t56592H Brassica oleracea HOM05D003160 ORTHO05D005967 4.4e-06 55.8 117 25.6
Potri.013G117000 Populus trichocarpa HOM05D003160 ORTHO05D005967 4.4e-06 55.8 166 25.3
Prupe.8G048900 Prunus persica HOM05D003160 ORTHO05D005967 4.4e-06 55.8 115 22.6
TWI34G0437 Tripterygium wilfordii HOM05D003160 ORTHO05D005967 4.4e-06 55.8 112 26.8
Sp6g07950 Schrenkiella parvula HOM05D003160 ORTHO05D005967 5.7e-06 55.5 117 25.6
Carub.0006s3593 Capsella rubella HOM05D010811 ORTHO05D010088 7.4e-06 55.1 194 32.0
COL.COLO4_17389 Corchorus olitorius HOM05D003160 ORTHO05D005967 7.4e-06 55.1 160 26.2
ECA236G3190 Erigeron canadensis HOM05D000669 ORTHO05D000679 7.4e-06 55.1 86 38.4
Potri.019G087300 Populus trichocarpa HOM05D003160 ORTHO05D005967 7.4e-06 55.1 168 23.2
Thecc.07G148800 Theobroma cacao HOM05D003160 ORTHO05D005967 7.4e-06 55.1 155 24.5
unitig_37.g13119 Utricularia gibba HOM05D003160 ORTHO05D005967 9.7e-06 54.7 110 25.5
VMungo1215G3266 Vigna mungo HOM05D003160 ORTHO05D005967 9.7e-06 54.7 110 24.5


User provided reference genes

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