Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G3356 Fragaria x ananassa HOM05D000861 ORTHO05D004749 5.0e-218 761.9 464 100.0
FvH4_7g05020 Fragaria vesca HOM05D000861 ORTHO05D004749 8.0e-216 754.6 464 99.4
FAN01G1629 Fragaria x ananassa HOM05D000861 ORTHO05D004749 4.4e-206 722.2 433 97.2
FAN10G0630 Fragaria x ananassa HOM05D000861 ORTHO05D004749 5.0e-202 708.8 358 96.9
RcHm_v2.0_Chr1g0331291 Rosa chinensis HOM05D000861 ORTHO05D004749 4.6e-187 659.1 354 90.4
RcHm_v2.0_Chr1g0331341 Rosa chinensis HOM05D000861 ORTHO05D004749 1.2e-168 597.8 316 90.2
Prupe.2G061200 Prunus persica HOM05D000861 ORTHO05D004749 8.1e-160 568.5 355 76.3
Haze_20079 Corylus avellana HOM05D000861 ORTHO05D004749 8.2e-144 515.4 353 69.4
CiPaw.09G025900 Carya illinoinensis HOM05D000861 ORTHO05D004749 3.8e-141 506.5 346 69.1
TWI74G1428 Tripterygium wilfordii HOM05D000861 ORTHO05D004749 5.5e-140 502.7 340 69.7
MD07G1054500 Malus domestica HOM05D000861 ORTHO05D004749 2.1e-139 500.7 356 69.1
Dinv25026 Davidia involucrata HOM05D000861 ORTHO05D004749 3.5e-139 500.0 344 68.3
Lj1g0012940 Lotus japonicus HOM05D000861 ORTHO05D004749 6.0e-139 499.2 349 66.8
CSS0019173 Camellia sinensis var. sinensis HOM05D000861 ORTHO05D004749 4.3e-137 493.0 340 66.2
MD02G1263700 Malus domestica HOM05D000861 ORTHO05D004749 2.2e-136 490.7 356 67.4
Cc09_g02090 Coffea canephora HOM05D000861 ORTHO05D004749 2.8e-136 490.3 345 65.2
Rhsim10G0079800 Rhododendron simsii HOM05D000861 ORTHO05D004749 8.2e-136 488.8 339 65.5
Potri.016G062900 Populus trichocarpa HOM05D000861 ORTHO05D004749 6.9e-135 485.7 344 66.9
QL07p025600 Quercus lobata HOM05D000861 ORTHO05D004749 6.9e-135 485.7 346 67.9
Cfa006350 Carpinus fangiana HOM05D000861 ORTHO05D004749 1.2e-134 485.0 352 66.5
CANSAT54G1949 Cannabis sativa HOM05D000861 ORTHO05D004749 2.0e-134 484.2 353 66.3
Haze_04427 Corylus avellana HOM05D000861 ORTHO05D004749 2.0e-134 484.2 346 67.3
Ca_00040_v3 Cicer arietinum L. HOM05D000861 ORTHO05D004749 4.5e-134 483.0 349 64.5
CiPaw.10G023500 Carya illinoinensis HOM05D000861 ORTHO05D004749 1.4e-132 478.0 352 65.1
Lj2A1153T47 Lonicera japonica HOM05D000861 ORTHO05D004749 3.2e-132 476.9 338 64.5
THA.LOC104826781 Tarenaya hassleriana HOM05D000861 ORTHO05D004749 4.2e-132 476.5 343 64.1
Sp3g10170 Schrenkiella parvula HOM05D000861 ORTHO05D004749 2.7e-131 473.8 337 64.4
Psat1g222880 Pisum sativum HOM05D000861 ORTHO05D004749 4.6e-131 473.0 351 63.0
Migut.C01187 Erythranthe guttata HOM05D000861 ORTHO05D004749 1.0e-130 471.9 339 64.9
Psat6g110040 Pisum sativum HOM05D000861 ORTHO05D004749 3.9e-130 469.9 345 63.8
Manes.08G039800 Manihot esculenta HOM05D000861 ORTHO05D004749 5.1e-130 469.5 350 64.0
Lalb_Chr20g0111111 Lupinus albus HOM05D000861 ORTHO05D004749 6.7e-130 469.2 345 63.5
Lalb_Chr25g0287681 Lupinus albus HOM05D000861 ORTHO05D004749 6.7e-130 469.2 341 63.9
TAR636G3394 Trochodendron aralioides HOM05D000861 ORTHO05D004749 1.1e-129 468.4 337 64.1
Sabra16G0065200 Salix brachista HOM05D000861 ORTHO05D004749 2.0e-129 467.6 341 65.7
Glyma.19G204100 Glycine max HOM05D000861 ORTHO05D004749 4.3e-129 466.5 354 61.9
vmacro05483 Vaccinium macrocarpon HOM05D000861 ORTHO05D004749 3.7e-128 463.4 337 64.4
TPR.G14497 Trifolium pratense HOM05D000861 ORTHO05D004749 1.4e-127 461.5 345 63.5
VMungo1383G1884 Vigna mungo HOM05D000861 ORTHO05D004749 2.4e-127 460.7 347 62.5
Medtr1g054715 Medicago truncatula HOM05D000861 ORTHO05D004749 4.5e-126 456.4 345 62.0
Sabra06G0151900 Salix brachista HOM05D000861 ORTHO05D004749 4.5e-126 456.4 387 58.1
Lj1A65T56 Lonicera japonica HOM05D000861 ORTHO05D004749 5.9e-126 456.1 342 62.6
CSS0040474 Camellia sinensis var. sinensis HOM05D000861 ORTHO05D004749 1.0e-125 455.3 313 66.5
MELO3C009074.2 Cucumis melo HOM05D000861 ORTHO05D008567 1.0e-125 455.3 346 60.7
Glyma.03G206500 Glycine max HOM05D000861 ORTHO05D004749 1.0e-125 455.3 351 61.5
CsaV3_4G031490 Cucumis sativus L. HOM05D000861 ORTHO05D004749 1.3e-125 454.9 339 61.7
Manes.09G040600 Manihot esculenta HOM05D000861 ORTHO05D004749 1.7e-125 454.5 316 65.5
GSVIVG01033426001 Vitis vinifera HOM05D000861 ORTHO05D004749 6.5e-125 452.6 340 63.8
PGSC0003DMG400002212 Solanum tuberosum HOM05D000861 ORTHO05D004749 8.5e-125 452.2 346 58.4
Hma1.2p1_0636F.1_g193240 Hydrangea macrophylla HOM05D000861 ORTHO05D004749 1.4e-124 451.4 308 66.2
TAR633G2067 Trochodendron aralioides HOM05D000861 ORTHO05D004749 1.4e-124 451.4 354 60.7
arahy.Tifrunner.gnm1.ann1.BI8ZDZ Arachis hypogaea HOM05D000861 ORTHO05D004749 1.9e-124 451.1 340 61.5
Glyma.02G168400 Glycine max HOM05D000861 ORTHO05D004749 1.9e-124 451.1 349 60.5
TPR.G29255 Trifolium pratense HOM05D000861 ORTHO05D004749 1.9e-124 451.1 350 60.6
arahy.Tifrunner.gnm1.ann1.9W4D6L Arachis hypogaea HOM05D000861 ORTHO05D004749 2.5e-124 450.7 340 61.5
Sopen04g019180 Solanum pennellii HOM05D000861 ORTHO05D004749 7.2e-124 449.1 346 58.7
PGR004G1046 Punica granatum HOM05D000861 ORTHO05D004749 1.6e-123 448.0 340 64.4
Lalb_Chr01g0017651 Lupinus albus HOM05D000861 ORTHO05D004749 2.1e-123 447.6 354 59.6
Solyc04g049290.2 Solanum lycopersicum HOM05D000861 ORTHO05D004749 2.7e-123 447.2 346 58.7
ClCG04G000550 Citrullus lanatus HOM05D000861 ORTHO05D004749 2.3e-122 444.1 345 60.9
Ciclev10012217m.g Citrus clementina HOM05D000861 ORTHO05D004749 3.0e-122 443.7 309 66.0
Nn2g14698 Nelumbo nucifera HOM05D000861 ORTHO05D004749 3.0e-122 443.7 351 60.4
TPR.G2104 Trifolium pratense HOM05D000861 ORTHO05D004749 3.9e-122 443.4 348 59.5
Aqoxy4G02829 Aquilegia oxysepala HOM05D000861 ORTHO05D004749 5.1e-122 443.0 338 61.2
BcaB06g25559 Brassica carinata HOM05D000861 ORTHO05D004749 8.8e-122 442.2 344 59.6
SGA_v2.0_scaffold274G46507 Striga asiatica HOM05D000861 ORTHO05D004749 1.1e-119 435.3 337 59.9
Peaxi162Scf00072g00619 Petunia axillaris HOM05D000861 ORTHO05D004749 1.2e-118 431.8 349 57.3
Sabra16G0064900 Salix brachista HOM05D000861 ORTHO05D004749 1.2e-118 431.8 352 59.9
PSO384G1311 Papaver somniferum HOM05D000861 ORTHO05D004749 4.5e-118 429.9 342 59.9
arahy.Tifrunner.gnm1.ann1.2N6KDB Arachis hypogaea HOM05D000861 ORTHO05D004749 5.9e-118 429.5 343 57.7
arahy.Tifrunner.gnm1.ann1.5F6CY5 Arachis hypogaea HOM05D000861 ORTHO05D004749 1.0e-117 428.7 343 57.7
Eucgr.A02509 Eucalyptus grandis HOM05D000861 ORTHO05D004749 1.7e-117 427.9 319 64.3
Nn5g30627 Nelumbo nucifera HOM05D000861 ORTHO05D004749 1.4e-116 424.9 338 59.2
Hma1.2p1_0516F.1_g170530 Hydrangea macrophylla HOM05D000861 ORTHO05D004749 1.9e-116 424.5 343 60.9
BcaC05g29310 Brassica carinata HOM05D000861 ORTHO05D004749 7.2e-116 422.5 341 58.9
BraA05t22541Z Brassica rapa HOM05D000861 ORTHO05D007385 9.4e-116 422.2 339 59.6
Nitab4.5_0000575g0240 Nicotiana tabacum HOM05D000861 ORTHO05D004749 9.4e-116 422.2 336 57.7
Aqoxy2G01335 Aquilegia oxysepala HOM05D000861 ORTHO05D004749 1.6e-115 421.4 330 60.0
Duzib093G1597 Durio zibethinus HOM05D000861 ORTHO05D004749 1.6e-115 421.4 348 60.6
A05p37430 Brassica napus HOM05D000861 ORTHO05D007385 1.4e-114 418.3 339 59.0
MBI01_g21127_MAGBIO Magnolia biondii HOM05D000861 ORTHO05D004749 1.8e-114 417.9 335 58.5
AUR62025238 Chenopodium quinoa HOM05D000861 ORTHO05D004749 2.3e-114 417.5 340 56.8
Duzib128G1936 Durio zibethinus HOM05D000861 ORTHO05D004749 2.3e-114 417.5 348 59.2
Thecc.05G180600 Theobroma cacao HOM05D000861 ORTHO05D004749 2.3e-114 417.5 355 59.7
C05p55990 Brassica napus HOM05D000861 ORTHO05D004749 8.8e-114 415.6 341 58.1
VMungo0720G2154 Vigna mungo HOM05D000861 ORTHO05D004749 8.8e-114 415.6 349 55.6
unitig_749.g14024 Utricularia gibba HOM05D000861 ORTHO05D004749 4.4e-113 413.3 320 58.4
Peaxi162Scf00195g00910 Petunia axillaris HOM05D000861 ORTHO05D004749 2.8e-112 410.6 341 54.0
Sabra16G0065500 Salix brachista HOM05D000861 ORTHO05D004749 2.8e-112 410.6 353 57.8
Sed0004581 Sechium edule HOM05D000861 ORTHO05D004749 8.2e-112 409.1 346 54.9
Atru.chr8.1223 Acer truncatum HOM05D000861 ORTHO05D004749 1.1e-111 408.7 342 60.5
ECA234G4058 Erigeron canadensis HOM05D000861 ORTHO05D004749 1.1e-111 408.7 339 54.3
PGSC0003DMG400016019 Solanum tuberosum HOM05D000861 ORTHO05D004749 3.1e-111 407.1 341 55.1
HanXRQChr12g0359061 Helianthus annuus HOM05D000861 ORTHO05D004749 1.6e-110 404.8 344 53.5
Nitab4.5_0007421g0010 Nicotiana tabacum HOM05D000861 ORTHO05D004749 2.6e-110 404.1 336 56.2
vmacro22548 Vaccinium macrocarpon HOM05D000861 ORTHO05D004749 1.3e-109 401.7 337 57.9
Phvul.007G262800 Phaseolus vulgaris HOM05D000861 ORTHO05D004749 1.7e-109 401.4 348 54.0
Ca_26442_v3 Cicer arietinum L. HOM05D000861 ORTHO05D004749 7.2e-108 396.0 309 60.2
Lsat_1_v5_gn_2_66000 Lactuca sativa HOM05D000861 ORTHO05D004749 7.2e-108 396.0 341 53.7
CAN.G186.36 Capsicum annuum HOM05D000861 ORTHO05D004749 9.4e-108 395.6 342 52.9
BcaB04g18704 Brassica carinata HOM05D000861 ORTHO05D004749 1.2e-107 395.2 259 69.1
Lj5g0002775 Lotus japonicus HOM05D000861 ORTHO05D004749 1.6e-107 394.8 349 55.3
Solyc04g009600.3 Solanum lycopersicum HOM05D000861 ORTHO05D004749 1.6e-107 394.8 349 53.3
Sopen04g004750 Solanum pennellii HOM05D000861 ORTHO05D004749 2.1e-107 394.4 349 53.3
COL.COLO4_29438 Corchorus olitorius HOM05D000861 ORTHO05D004749 6.1e-107 392.9 347 56.2
Aa31LG3G5570 Aethionema arabicum HOM05D000861 ORTHO05D004749 1.2e-105 388.7 330 57.0
Gohir.A09G130700 Gossypium hirsutum HOM05D000861 ORTHO05D004749 2.6e-105 387.5 339 56.0
Phvul.001G200100 Phaseolus vulgaris HOM05D000861 ORTHO05D004749 3.4e-105 387.1 309 58.9
CARHR086500 Cardamine hirsuta HOM05D000861 ORTHO05D004749 9.7e-105 385.6 331 56.5
Thhalv10020413m.g Eutrema salsugineum HOM05D000861 ORTHO05D004749 9.7e-105 385.6 336 55.7
Dinv24029 Davidia involucrata HOM05D000861 ORTHO05D004749 1.3e-104 385.2 247 70.9
AL3G23550 Arabidopsis lyrata HOM05D000861 ORTHO05D004749 2.8e-104 384.0 331 55.3
MSTRG.26071 Avicennia marina HOM05D000861 ORTHO05D004749 2.8e-104 384.0 337 54.3
Carub.0003s1128 Capsella rubella HOM05D000861 ORTHO05D004749 8.3e-104 382.5 335 54.6
Oeu022105.1 Olea europaea HOM05D000861 ORTHO05D004749 8.3e-104 382.5 347 53.3
AT3G11950 Arabidopsis thaliana HOM05D000861 ORTHO05D004749 2.4e-103 380.9 331 54.7
Oeu003219.1 Olea europaea HOM05D000861 ORTHO05D004749 4.1e-103 380.2 347 53.0
Gohir.D01G123600 Gossypium hirsutum HOM05D000861 ORTHO05D004749 7.0e-103 379.4 342 54.4
Gorai.002G154600 Gossypium raimondii HOM05D000861 ORTHO05D004749 4.5e-102 376.7 342 54.1
Gohir.A01G136400 Gossypium hirsutum HOM05D000861 ORTHO05D004749 1.7e-101 374.8 342 54.1
AUR62028947 Chenopodium quinoa HOM05D000861 ORTHO05D004749 2.2e-101 374.4 391 47.1
Nitab4.5_0008820g0010 Nicotiana tabacum HOM05D000861 ORTHO05D004749 1.1e-100 372.1 342 50.3
EL10Ac8g19073 Beta vulgaris HOM05D000861 ORTHO05D004749 1.5e-100 371.7 340 51.8
Oeu051191.1 Olea europaea HOM05D000861 ORTHO05D004749 1.9e-100 371.3 350 52.3
Sc13g0002540 Simmondsia chinensis HOM05D000861 ORTHO05D004749 1.2e-99 368.6 342 53.5
BraA03t12899Z Brassica rapa HOM05D000861 ORTHO05D004749 2.3e-98 364.4 333 53.5
BcaC01g04070 Brassica carinata HOM05D000861 ORTHO05D007385 5.7e-97 359.8 332 53.3
BolC3t16804H Brassica oleracea HOM05D000861 ORTHO05D004749 5.7e-97 359.8 332 53.3
A03p37380 Brassica napus HOM05D000861 ORTHO05D004749 7.5e-97 359.4 333 52.6
PSO425G0018 Papaver somniferum HOM05D000861 ORTHO05D004749 2.2e-96 357.8 281 60.5
CDE05G2486 Ceratophyllum demersum HOM05D000861 ORTHO05D004749 5.4e-95 353.2 324 53.4
ATR0789G014 Amborella trichopoda HOM05D000861 ORTHO05D004749 1.2e-94 352.1 294 55.4
C03p45380 Brassica napus HOM05D000861 ORTHO05D004749 7.7e-94 349.4 328 51.2
DCAR_027450 Daucus carota HOM05D000861 ORTHO05D004749 1.0e-93 349.0 278 56.8
Gohir.D09G126600 Gossypium hirsutum HOM05D000861 ORTHO05D004749 2.9e-93 347.4 268 62.7
Cpa.g.sc85.15 Carica papaya HOM05D000861 ORTHO05D004749 4.4e-89 333.6 346 51.2
SHI28323 Sapria himalayana HOM05D000861 ORTHO05D004749 9.2e-87 325.9 311 48.6
Ah.09g231540 Amaranthus hybridus HOM05D000861 ORTHO05D004749 2.9e-85 320.9 342 46.8
Nitab4.5_0000691g0150 Nicotiana tabacum HOM05D000861 ORTHO05D004749 1.8e-82 311.6 324 47.5
Gorai.006G145500 Gossypium raimondii HOM05D000861 ORTHO05D004749 2.8e-75 287.7 268 54.5
Zm00001eb246660 Zea mays HOM05D000861 ORTHO05D004749 1.8e-74 285.0 324 43.8
Os02g0605500 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 8.9e-74 282.7 324 43.2
Zm00001eb195790 Zea mays HOM05D000861 ORTHO05D004749 1.9e-68 265.0 331 42.9
Mapoly0057s0035 Marchantia polymorpha HOM05D000861 ORTHO05D004749 4.3e-68 263.8 330 41.5
Os12g0181300 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 1.5e-65 255.4 321 42.1
Actinidia01592 Actinidia chinensis HOM05D000861 ORTHO05D004749 2.0e-65 255.0 215 54.0
Os04g0218900 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 2.2e-64 251.5 333 40.5
Zm00001eb421970 Zea mays HOM05D000861 ORTHO05D004749 4.9e-64 250.4 290 44.8
Os05g0305200 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 1.1e-63 249.2 333 40.5
AagrBONN_evm.TU.Sc2ySwM_228.1074 Anthoceros agrestis HOM05D000861 ORTHO05D004749 1.2e-62 245.7 343 39.4
Pp3c24_6130 Physcomitrium patens HOM05D000861 ORTHO05D004749 3.1e-58 231.1 311 38.9
Pp3c13_13880 Physcomitrium patens HOM05D000861 ORTHO05D004749 5.2e-58 230.3 323 36.5
CBR_g23522 Chara braunii HOM05D000861 ORTHO05D004749 8.9e-58 229.6 272 40.1
HPP92_008306 Vanilla planifolia HOM05D000861 ORTHO05D004749 2.4e-55 221.5 210 50.5
Zm00001eb093630 Zea mays HOM05D000861 ORTHO05D004749 1.3e-53 215.7 330 37.6
SEGI_19220 Sequoiadendron giganteum HOM05D000861 ORTHO05D004749 3.9e-53 214.2 291 38.1
HPP92_003821 Vanilla planifolia HOM05D000861 ORTHO05D004749 1.6e-51 208.8 203 46.8
SMO194G0050 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 2.8e-51 208.0 300 36.3
SMO358G0316 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 2.8e-51 208.0 300 36.3
TAR626G0577 Trochodendron aralioides HOM05D000861 ORTHO05D003237 2.1e-46 191.8 137 67.2
Actinidia17295 Actinidia chinensis HOM05D000861 ORTHO05D004749 6.2e-43 180.3 134 58.2
Os04g0217900 Oryza sativa ssp. japonica HOM05D000861 ORTHO05D004749 4.9e-40 170.6 169 48.5
SalBow6G1870 Salvia bowleyana HOM05D000861 ORTHO05D004749 7.1e-39 166.8 130 59.2
TAR626G1779 Trochodendron aralioides HOM05D000861 ORTHO05D004749 9.3e-39 166.4 118 68.6
RcHm_v2.0_Chr3g0486361 Rosa chinensis HOM05D000861 ORTHO05D004749 1.9e-36 158.7 89 82.0
TAR371G0304 Trochodendron aralioides HOM05D000861 ORTHO05D003237 1.5e-33 149.1 111 62.2
HPP92_003796 Vanilla planifolia HOM05D000861 ORTHO05D004749 1.5e-33 149.1 163 50.3
RcHm_v2.0_Chr3g0486371 Rosa chinensis HOM05D000861 ORTHO05D004749 7.1e-31 140.2 83 81.9
Nitab4.5_0000691g0180 Nicotiana tabacum HOM05D000861 ORTHO05D004749 4.6e-30 137.5 162 40.7
TAR375G0848 Trochodendron aralioides HOM05D000861 ORTHO05D004749 3.9e-29 134.4 80 67.5
SMO361G0253 Selaginella moellendorffii HOM05D000861 ORTHO05D004749 6.7e-29 133.7 228 34.2
RcHm_v2.0_Chr3g0486481 Rosa chinensis HOM05D000861 ORTHO05D004749 1.6e-22 112.5 60 85.0
HPP92_003822 Vanilla planifolia HOM05D000861 ORTHO05D004749 2.5e-15 88.6 102 47.1
Actinidia38607 Actinidia chinensis HOM05D000861 ORTHO05D004749 1.3e-11 76.3 103 42.7
PRCOL_00002048 Prasinoderma coloniale HOM05D000861 ORTHO05D004749 2.8e-11 75.1 233 27.0
CBR_g488 Chara braunii HOM05D013604 ORTHO05D022303 1.9e-07 62.4 164 27.4


User provided reference genes

Program Settings