Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G2944 Fragaria x ananassa HOM05D004762 ORTHO05D005972 2.9e-290 1001.1 494 100.0
FAN01G2296 Fragaria x ananassa HOM05D004762 ORTHO05D005972 7.8e-275 949.9 514 92.8
FvH4_7g24680 Fragaria vesca HOM05D004762 ORTHO05D005972 1.2e-267 926.0 494 93.7
FAN10G2322 Fragaria x ananassa HOM05D004762 ORTHO05D005972 3.3e-265 917.9 494 92.9
FAN03G0495 Fragaria x ananassa HOM05D004762 ORTHO05D005972 5.8e-254 880.6 479 91.9
RcHm_v2.0_Chr1g0370541 Rosa chinensis HOM05D004762 ORTHO05D005972 1.6e-251 872.5 490 88.4
Prupe.2G252400 Prunus persica HOM05D004762 ORTHO05D005972 1.5e-233 812.8 486 81.9
MD01G1154800 Malus domestica HOM05D004762 ORTHO05D005972 4.3e-233 811.2 492 80.9
MD07G1223900 Malus domestica HOM05D004762 ORTHO05D005972 1.6e-232 809.3 486 82.3
CiPaw.01G300200 Carya illinoinensis HOM05D004762 ORTHO05D005972 1.3e-213 746.5 483 74.9
QL06p052059 Quercus lobata HOM05D004762 ORTHO05D005972 4.2e-212 741.5 492 73.8
TAR636G3670 Trochodendron aralioides HOM05D004762 ORTHO05D005972 1.8e-210 736.1 486 74.1
CANSAT56G2662 Cannabis sativa HOM05D004762 ORTHO05D005972 3.0e-210 735.3 489 73.6
Ciclev10031450m.g Citrus clementina HOM05D004762 ORTHO05D005972 1.5e-209 733.0 488 73.6
COL.COLO4_25767 Corchorus olitorius HOM05D004762 ORTHO05D005972 1.6e-208 729.6 485 73.2
Manes.07G131500 Manihot esculenta HOM05D004762 ORTHO05D005972 1.8e-207 726.1 485 72.2
Sed0015827 Sechium edule HOM05D004762 ORTHO05D005972 4.1e-207 724.9 490 73.7
Duzib106G1587 Durio zibethinus HOM05D004762 ORTHO05D005972 1.5e-206 723.0 484 72.3
Rhsim03G0145100 Rhododendron simsii HOM05D004762 ORTHO05D005972 2.0e-206 722.6 490 71.8
Cfa001301 Carpinus fangiana HOM05D004762 ORTHO05D005972 2.6e-206 722.2 486 73.5
COL.COLO4_23625 Corchorus olitorius HOM05D004762 ORTHO05D005972 2.6e-206 722.2 484 72.5
Eucgr.G03076 Eucalyptus grandis HOM05D004762 ORTHO05D005972 2.6e-206 722.2 493 71.0
Gorai.013G017200 Gossypium raimondii HOM05D004762 ORTHO05D005972 7.7e-206 720.7 484 72.7
Potri.012G095500 Populus trichocarpa HOM05D004762 ORTHO05D005972 7.7e-206 720.7 478 73.2
arahy.Tifrunner.gnm1.ann1.YY9F0M Arachis hypogaea HOM05D004762 ORTHO05D005972 1.0e-205 720.3 488 73.2
Haze_17244 Corylus avellana HOM05D004762 ORTHO05D005972 1.0e-205 720.3 495 72.5
CSS0039953 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 1.3e-205 719.9 491 73.1
CSS0044129 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 1.3e-205 719.9 491 73.1
Hma1.2p1_0145F.1_g065350 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 1.3e-205 719.9 481 73.8
CsaV3_5G010300 Cucumis sativus L. HOM05D004762 ORTHO05D005972 8.5e-205 717.2 483 74.3
Thecc.10G014000 Theobroma cacao HOM05D004762 ORTHO05D005972 8.5e-205 717.2 484 72.5
AT2G40190 Arabidopsis thaliana HOM05D004762 ORTHO05D005972 3.2e-204 715.3 487 71.0
Atru.BG.273.p Acer truncatum HOM05D004762 ORTHO05D005972 5.5e-204 714.5 453 75.9
Psat4g160680 Pisum sativum HOM05D004762 ORTHO05D005972 1.2e-203 713.4 488 71.5
Gohir.D13G015700 Gossypium hirsutum HOM05D004762 ORTHO05D005972 1.6e-203 713.0 484 72.5
Thhalv10016619m.g Eutrema salsugineum HOM05D004762 ORTHO05D005972 2.1e-203 712.6 482 71.8
AL108U10020 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 6.1e-203 711.1 482 71.0
TWI53G2041 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 6.1e-203 711.1 487 71.5
A05p06240 Brassica napus HOM05D004762 ORTHO05D005972 7.9e-203 710.7 482 71.8
GSVIVG01032791001 Vitis vinifera HOM05D004762 ORTHO05D005972 1.0e-202 710.3 487 72.1
Ca_23540_v3 Cicer arietinum L. HOM05D004762 ORTHO05D005972 1.8e-202 709.5 486 73.3
Sp4g22540 Schrenkiella parvula HOM05D004762 ORTHO05D005972 2.3e-202 709.1 482 70.7
Solyc10g076800.2 Solanum lycopersicum HOM05D004762 ORTHO05D005972 3.0e-202 708.8 481 71.5
PGSC0003DMG400019183 Solanum tuberosum HOM05D004762 ORTHO05D005972 3.9e-202 708.4 481 71.5
TWI09G1175 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 3.9e-202 708.4 481 71.9
Carub.0004s2241 Capsella rubella HOM05D004762 ORTHO05D005972 1.1e-201 706.8 482 70.3
Aa31LG5G19380 Aethionema arabicum HOM05D004762 ORTHO05D005972 2.0e-201 706.1 489 69.9
BraA05t19588Z Brassica rapa HOM05D004762 ORTHO05D005972 2.0e-201 706.1 482 71.4
Sc10g0002460 Simmondsia chinensis HOM05D004762 ORTHO05D005972 3.3e-201 705.3 478 71.1
Lalb_Chr04g0254441 Lupinus albus HOM05D004762 ORTHO05D005972 4.4e-201 704.9 477 71.9
vmacro06958 Vaccinium macrocarpon HOM05D004762 ORTHO05D005972 7.4e-201 704.1 522 68.0
BcaC02g12138 Brassica carinata HOM05D004762 ORTHO05D005972 9.7e-201 703.7 482 71.0
Migut.F00664 Erythranthe guttata HOM05D004762 ORTHO05D005972 2.8e-200 702.2 492 69.7
arahy.Tifrunner.gnm1.ann1.BGVI4S Arachis hypogaea HOM05D004762 ORTHO05D005972 4.8e-200 701.4 487 71.9
Medtr8g027750 Medicago truncatula HOM05D004762 ORTHO05D005972 4.8e-200 701.4 482 72.4
C04p07190 Brassica napus HOM05D004762 ORTHO05D005972 6.3e-200 701.0 480 70.8
PSO675G7276 Papaver somniferum HOM05D004762 ORTHO05D005972 1.1e-199 700.3 483 69.6
SalBow6G6782 Salvia bowleyana HOM05D004762 ORTHO05D005972 1.1e-199 700.3 493 69.4
CAN.G1087.1 Capsicum annuum HOM05D004762 ORTHO05D005972 1.4e-199 699.9 482 70.1
ClCG07G004360 Citrullus lanatus HOM05D004762 ORTHO05D005972 2.4e-199 699.1 523 68.1
BcaB02g09041 Brassica carinata HOM05D004762 ORTHO05D005972 6.9e-199 697.6 466 71.7
BolC4t22343H Brassica oleracea HOM05D004762 ORTHO05D005972 1.5e-198 696.4 481 70.7
Aqoxy7G00585 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 2.0e-198 696.0 488 69.1
Lj3g0010190 Lotus japonicus HOM05D004762 ORTHO05D005972 7.7e-198 694.1 483 71.6
Nitab4.5_0000797g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 7.7e-198 694.1 476 71.0
Glyma.07G056300 Glycine max HOM05D004762 ORTHO05D005972 1.7e-197 693.0 478 70.7
Peaxi162Scf00284g00722 Petunia axillaris HOM05D004762 ORTHO05D005972 1.7e-197 693.0 476 70.4
AUR62012271 Chenopodium quinoa HOM05D004762 ORTHO05D005972 2.9e-197 692.2 485 68.0
CAN.G1305.22 Capsicum annuum HOM05D004762 ORTHO05D005972 6.5e-197 691.0 482 69.1
Phvul.010G113600 Phaseolus vulgaris HOM05D004762 ORTHO05D005972 2.5e-196 689.1 478 70.5
AL4G37920 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 5.5e-196 688.0 482 69.3
EL10Ac2g04854 Beta vulgaris HOM05D004762 ORTHO05D005972 7.2e-196 687.6 486 67.5
PSO017G1441 Papaver somniferum HOM05D004762 ORTHO05D005972 9.4e-196 687.2 488 67.6
Cc08_g07190 Coffea canephora HOM05D004762 ORTHO05D005972 1.2e-195 686.8 482 70.1
Nitab4.5_0013304g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 1.2e-195 686.8 476 70.0
arahy.Tifrunner.gnm1.ann1.NBD53L Arachis hypogaea HOM05D004762 ORTHO05D005972 4.7e-195 684.9 500 69.6
VMungo0331G1989 Vigna mungo HOM05D004762 ORTHO05D005972 6.1e-195 684.5 478 69.9
Gohir.A13G014500 Gossypium hirsutum HOM05D004762 ORTHO05D005972 1.0e-194 683.7 484 69.8
Nn1g09364 Nelumbo nucifera HOM05D004762 ORTHO05D005972 1.8e-194 682.9 469 70.6
PSO017G5956 Papaver somniferum HOM05D004762 ORTHO05D005972 3.9e-194 681.8 502 65.9
Glyma.16G025200 Glycine max HOM05D004762 ORTHO05D005972 6.7e-194 681.0 482 69.5
PSO478G3676 Papaver somniferum HOM05D004762 ORTHO05D005972 6.7e-194 681.0 488 67.4
Lj8A64T49 Lonicera japonica HOM05D004762 ORTHO05D005972 1.1e-193 680.2 484 69.6
HanXRQChr14g0459541 Helianthus annuus HOM05D004762 ORTHO05D005972 1.5e-193 679.9 478 69.0
ECA238G4598 Erigeron canadensis HOM05D001399 ORTHO05D001670 3.7e-192 675.2 452 72.3
Hma1.2p1_0523F.1_g172170 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 8.5e-189 664.1 481 69.2
Sabra15G0114600 Salix brachista HOM05D004762 ORTHO05D005972 8.5e-189 664.1 627 56.5
PGR142G3177 Punica granatum HOM05D004762 ORTHO05D005972 1.5e-188 663.3 486 67.3
Oeu043882.1 Olea europaea HOM05D004762 ORTHO05D005972 1.9e-188 662.9 531 63.8
ATR0580G181 Amborella trichopoda HOM05D004762 ORTHO05D005972 6.1e-187 657.9 485 67.2
Oeu011273.2 Olea europaea HOM05D004762 ORTHO05D005972 1.8e-186 656.4 566 60.1
Zm00001eb030250 Zea mays HOM05D004762 ORTHO05D005972 1.8e-186 656.4 478 65.3
Lsat_1_v5_gn_2_124101 Lactuca sativa HOM05D004762 ORTHO05D005972 2.2e-184 649.4 480 67.7
DCAR_007786 Daucus carota HOM05D004762 ORTHO05D005972 3.7e-184 648.7 466 68.2
CDE02G4330 Ceratophyllum demersum HOM05D004762 ORTHO05D005972 2.5e-180 636.0 486 65.2
HPP92_020134 Vanilla planifolia HOM05D004762 ORTHO05D005972 6.8e-178 627.9 452 66.8
MELO3C018365.2 Cucumis melo HOM05D004762 ORTHO05D005972 5.5e-172 608.2 410 73.7
AUR62022908 Chenopodium quinoa HOM05D004762 ORTHO05D005972 4.1e-167 592.0 407 70.0
DCAR_024818 Daucus carota HOM05D004762 ORTHO05D005972 9.2e-167 590.9 471 62.0
Hma1.2p1_2705F.1_g327160 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 1.3e-165 587.0 388 75.3
SGA_v2.0_scaffold44G16679 Striga asiatica HOM05D004762 ORTHO05D005972 1.1e-164 583.9 412 68.7
TPR.G15355 Trifolium pratense HOM05D004762 ORTHO05D005972 1.2e-163 580.5 387 74.4
Mapoly0096s0017 Marchantia polymorpha HOM05D004762 ORTHO05D005972 2.3e-149 533.1 468 58.3
Actinidia33916 Actinidia chinensis HOM05D004762 ORTHO05D005972 3.9e-149 532.3 426 65.0
SGA_v2.0_scaffold60G20982 Striga asiatica HOM05D004762 ORTHO05D005972 4.7e-147 525.4 488 55.5
AagrBONN_evm.TU.Sc2ySwM_228.3247 Anthoceros agrestis HOM05D004762 ORTHO05D005972 1.1e-146 524.2 465 57.2
unitig_748.g8448 Utricularia gibba HOM05D004762 ORTHO05D005972 5.8e-145 518.5 478 53.3
Pp3c14_26870 Physcomitrium patens HOM05D004762 ORTHO05D005972 7.5e-145 518.1 463 56.4
SMO358G0322 Selaginella moellendorffii HOM05D004762 ORTHO05D005972 6.2e-139 498.4 479 55.5
BcaC02g12136 Brassica carinata HOM05D004762 ORTHO05D005972 3.5e-134 482.6 450 58.0
CBR_g12682 Chara braunii HOM05D004762 ORTHO05D005972 9.0e-130 468.0 472 51.9
Dinv21748 Davidia involucrata HOM05D004762 ORTHO05D005972 1.1e-124 451.1 305 70.8
Hund15913 Selenicereus undatus HOM05D004762 ORTHO05D005972 5.3e-122 442.2 494 50.2
CARHR135230 Cardamine hirsuta HOM05D004762 ORTHO05D005972 9.0e-122 441.4 307 67.1
Sopen10g028440 Solanum pennellii HOM05D004762 ORTHO05D005972 6.4e-120 435.3 300 68.7
PSO017G2836 Papaver somniferum HOM05D004762 ORTHO05D005972 2.7e-110 403.3 250 71.6
MCO10G125 Micromonas commoda HOM05D004762 ORTHO05D005972 2.3e-109 400.2 499 45.9
Os12g0583000 Oryza sativa ssp. japonica HOM05D004762 ORTHO05D005972 5.7e-100 369.0 282 64.5
Cre01.g058521 Chlamydomonas reinhardtii HOM05D004762 ORTHO05D005972 9.4e-95 351.7 563 39.6
PRCOL_00001728 Prasinoderma coloniale HOM05D004762 ORTHO05D005972 1.2e-94 351.3 456 44.5
Gohir.D06G056233 Gossypium hirsutum HOM05D004762 ORTHO05D005972 9.7e-92 341.7 282 63.5
Haze_26859 Corylus avellana HOM05D004762 ORTHO05D005972 2.7e-86 323.6 484 39.0
Gorai.004G138800 Gossypium raimondii HOM05D004762 ORTHO05D005972 1.9e-79 300.8 282 58.2
Gohir.D08G135600 Gossypium hirsutum HOM05D004762 ORTHO05D005972 2.5e-79 300.4 276 58.7
BraA04t18511Z Brassica rapa HOM05D004762 ORTHO05D001193 2.1e-70 270.8 269 53.2
BcaB01g03555 Brassica carinata HOM05D004762 ORTHO05D005972 3.7e-67 260.0 201 66.2
Cpa.g.sc1441.3 Carica papaya HOM05D004762 ORTHO05D005972 7.0e-66 255.8 158 74.7
Potri.015G093000 Populus trichocarpa HOM05D004762 ORTHO05D005972 5.0e-64 249.6 178 69.7
Aqoxy4G02491 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 1.5e-60 238.0 184 64.7
TAR633G0702 Trochodendron aralioides HOM05D003030 ORTHO05D003610 2.9e-56 223.8 157 72.0
Aqoxy4G02490 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 8.6e-56 222.2 192 58.3
A04p29970 Brassica napus HOM05D004762 ORTHO05D001193 1.2e-54 218.4 269 46.5
Nitab4.5_0006049g0030 Nicotiana tabacum HOM05D004762 ORTHO05D005972 3.7e-43 180.3 111 80.2
SEGI_20752 Sequoiadendron giganteum HOM05D004762 ORTHO05D005972 1.4e-42 178.3 115 74.8
QL11p009420 Quercus lobata HOM05D004762 ORTHO05D005972 3.9e-40 170.2 103 83.5
Aqoxy4G02489 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 5.6e-39 166.4 108 75.9
Phvul.010G113266 Phaseolus vulgaris HOM05D004762 ORTHO05D005972 2.1e-38 164.5 116 62.9
EL10Ac2g03328 Beta vulgaris HOM05D004762 ORTHO05D005972 1.8e-37 161.4 107 74.8
BcaB06g29139 Brassica carinata HOM05D004762 ORTHO05D005972 5.2e-37 159.8 109 71.6
EL10Ac6g13956 Beta vulgaris HOM05D004762 ORTHO05D005972 1.3e-32 145.2 91 76.9
Hma1.2p1_0812F.1_g222370 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 6.6e-32 142.9 368 29.3
Nitab4.5_0001180g0090 Nicotiana tabacum HOM05D004762 ORTHO05D005972 9.5e-31 139.0 91 64.8
TPR.G10834 Trifolium pratense HOM05D004762 ORTHO05D005972 1.2e-30 138.7 95 65.3
EL10Ac6g14685 Beta vulgaris HOM05D004762 ORTHO05D005972 8.1e-22 109.4 103 56.3
BcaC01g05421 Brassica carinata HOM05D002909 ORTHO05D000493 1.4e-21 108.6 71 77.5
C03p26800 Brassica napus HOM05D000223 ORTHO05D001193 1.4e-21 108.6 71 77.5
BolC3t15065H Brassica oleracea HOM05D000223 ORTHO05D001193 1.4e-21 108.6 71 77.5
arahy.Tifrunner.gnm1.ann1.38D1EG Arachis hypogaea HOM05D005637 ORTHO05D006983 3.4e-20 104.0 66 75.8
arahy.Tifrunner.gnm1.ann1.SGI312 Arachis hypogaea HOM05D004762 ORTHO05D005972 2.2e-19 101.3 68 73.5
SEGI_02041 Sequoiadendron giganteum HOM05D004762 ORTHO05D005972 7.1e-18 96.3 96 52.1
EL10Ac3g06411 Beta vulgaris HOM05D004762 ORTHO05D005972 1.1e-13 82.4 44 86.4
MD13G1267900 Malus domestica HOM05D004762 ORTHO05D005972 1.3e-11 75.5 42 83.3
SMO200G0224 Selaginella moellendorffii HOM05D004141 ORTHO05D005416 8.4e-11 72.8 455 24.2
Nitab4.5_0004804g0050 Nicotiana tabacum HOM05D004762 ORTHO05D005972 1.4e-10 72.0 49 71.4
Sed0021837 Sechium edule HOM05D004762 ORTHO05D005972 2.4e-10 71.2 43 79.1
MD02G1220900 Malus domestica HOM05D004762 ORTHO05D005972 3.2e-10 70.9 41 73.2
Lsat_1_v5_gn_3_79340 Lactuca sativa HOM05D004762 ORTHO05D231769 2.3e-08 64.7 69 52.2
Gohir.D05G318650 Gossypium hirsutum HOM05D004762 ORTHO05D005972 3.9e-08 63.9 39 79.5
Gorai.012G079400 Gossypium raimondii HOM05D004762 ORTHO05D046822 3.9e-08 63.9 39 79.5
Gohir.D07G108366 Gossypium hirsutum HOM05D004762 ORTHO05D046822 1.1e-07 62.4 39 76.9
BcaC08g47454 Brassica carinata HOM05D004141 ORTHO05D005416 3.3e-07 60.8 203 28.6
BolC6t40287H Brassica oleracea HOM05D004141 ORTHO05D005416 3.3e-07 60.8 203 28.6
BraA07t31908Z Brassica rapa HOM05D004141 ORTHO05D005416 5.6e-07 60.1 203 29.1
A07p44000 Brassica napus HOM05D004141 ORTHO05D005416 9.6e-07 59.3 205 29.8
C06p52680 Brassica napus HOM05D004141 ORTHO05D005416 9.6e-07 59.3 191 29.8
GSVIVG01022727001 Vitis vinifera HOM05D004762 ORTHO05D005972 1.3e-06 58.9 51 52.9
BraA03t11487Z Brassica rapa HOM05D000223 ORTHO05D001193 3.6e-06 57.4 65 52.3


User provided reference genes

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