Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G2551 Fragaria x ananassa HOM05D002336 ORTHO05D002526 7.5e-164 580.5 299 100.0
FAN21G1357 Fragaria x ananassa HOM05D002336 ORTHO05D002526 1.2e-68 264.2 173 84.4
FvH4_3g00201 Fragaria vesca HOM05D002336 ORTHO05D002526 4.2e-66 255.8 180 80.0
FAN19G0974 Fragaria x ananassa HOM05D002336 ORTHO05D002526 3.6e-65 252.7 157 89.2
FAN19G0993 Fragaria x ananassa HOM05D002336 ORTHO05D002526 5.4e-53 212.2 141 84.4
FAN06G5014 Fragaria x ananassa HOM05D002336 ORTHO05D002526 3.5e-52 209.5 147 81.6
FAN25G0875 Fragaria x ananassa HOM05D002378 ORTHO05D005974 2.8e-41 173.3 246 51.2
RcHm_v2.0_Chr5g0000271 Rosa chinensis HOM05D002336 ORTHO05D002526 9.2e-37 158.3 193 58.5
MD10G1340900 Malus domestica HOM05D002336 ORTHO05D002526 2.7e-36 156.8 195 52.8
MD05G1363300 Malus domestica HOM05D002336 ORTHO05D002526 8.6e-35 151.8 195 51.3
Prupe.4G002300 Prunus persica HOM05D002336 ORTHO05D002526 2.5e-34 150.2 201 49.8
PGR004G0111 Punica granatum HOM05D002336 ORTHO05D002526 5.6e-34 149.1 199 51.3
Eucgr.D00945 Eucalyptus grandis HOM05D002336 ORTHO05D002526 7.3e-34 148.7 203 48.8
Hma1.2p1_0394F.1_g143540 Hydrangea macrophylla HOM05D002336 ORTHO05D002526 4.0e-32 142.9 200 49.5
Manes.09G085000 Manihot esculenta HOM05D002336 ORTHO05D002526 6.8e-32 142.1 196 50.0
Dinv07137 Davidia involucrata HOM05D002336 ORTHO05D002526 1.5e-31 141.0 202 47.5
CSS0011496 Camellia sinensis var. sinensis HOM05D002336 ORTHO05D002526 1.3e-30 137.9 196 46.4
Peaxi162Scf00811g00442 Petunia axillaris HOM05D002336 ORTHO05D002526 1.4e-29 134.4 202 44.6
CiPaw.10G083700 Carya illinoinensis HOM05D002336 ORTHO05D002526 9.2e-29 131.7 193 45.6
ClCG01G021110 Citrullus lanatus HOM05D002336 ORTHO05D002526 1.2e-28 131.3 198 45.5
Solyc04g015180.3 Solanum lycopersicum HOM05D002336 ORTHO05D002526 2.7e-28 130.2 196 45.4
Atru.chr1.2178 Acer truncatum HOM05D002336 ORTHO05D002526 3.5e-28 129.8 191 47.1
Ah.01g002070 Amaranthus hybridus HOM05D002336 ORTHO05D002526 3.5e-28 129.8 150 51.3
Sed0019231 Sechium edule HOM05D002336 ORTHO05D002526 3.5e-28 129.8 223 43.0
CANSAT56G2025 Cannabis sativa HOM05D002336 ORTHO05D002526 4.6e-28 129.4 211 45.5
Ca_00777_v3 Cicer arietinum L. HOM05D000491 ORTHO05D000359 4.6e-28 129.4 183 49.7
Potri.016G003200 Populus trichocarpa HOM05D002336 ORTHO05D002526 6.0e-28 129.0 180 48.3
Sopen04g007220 Solanum pennellii HOM05D002336 ORTHO05D002526 7.8e-28 128.6 196 44.9
MELO3C007997.2 Cucumis melo HOM05D002336 ORTHO05D002526 2.3e-27 127.1 197 45.2
CsaV3_6G048110 Cucumis sativus L. HOM05D002336 ORTHO05D002526 2.3e-27 127.1 197 45.7
GSVIVG01003467001 Vitis vinifera HOM05D002336 ORTHO05D002526 2.3e-27 127.1 203 43.8
Thhalv10001026m.g Eutrema salsugineum HOM05D002336 ORTHO05D002526 3.9e-27 126.3 191 43.5
Sabra16G0008400 Salix brachista HOM05D000456 ORTHO05D000887 5.1e-27 125.9 180 47.8
C02p48950 Brassica napus HOM05D002336 ORTHO05D002526 8.6e-27 125.2 219 39.3
EL10Ac9g22885 Beta vulgaris HOM05D002336 ORTHO05D002526 1.1e-26 124.8 161 48.4
AUR62015177 Chenopodium quinoa HOM05D002336 ORTHO05D002526 1.1e-26 124.8 179 45.3
SalBow8G5548 Salvia bowleyana HOM05D002336 ORTHO05D002526 1.9e-26 124.0 211 42.2
Cfa000015 Carpinus fangiana HOM05D002336 ORTHO05D002526 5.6e-26 122.5 202 42.6
Ciclev10016499m.g Citrus clementina HOM05D002336 ORTHO05D002526 5.6e-26 122.5 201 42.3
Nitab4.5_0010199g0060 Nicotiana tabacum HOM05D002336 ORTHO05D002526 5.6e-26 122.5 215 41.4
THA.LOC104823021 Tarenaya hassleriana HOM05D002336 ORTHO05D002526 7.3e-26 122.1 193 44.0
Medtr2g027530 Medicago truncatula HOM05D002336 ORTHO05D002526 9.5e-26 121.7 182 46.7
Psat1g171880 Pisum sativum HOM05D002336 ORTHO05D002526 9.5e-26 121.7 188 45.2
CAN.G1456.5 Capsicum annuum HOM05D002336 ORTHO05D002526 1.2e-25 121.3 194 44.3
Prupe.4G017900 Prunus persica HOM05D002336 ORTHO05D002526 1.6e-25 120.9 114 55.3
Sp2g12487 Schrenkiella parvula HOM05D002336 ORTHO05D002526 1.6e-25 120.9 181 44.2
MSTRG.16067 Avicennia marina HOM05D002336 ORTHO05D002526 2.1e-25 120.6 190 43.2
A02p31610 Brassica napus HOM05D002336 ORTHO05D002526 2.1e-25 120.6 166 43.4
Cc09_g00160 Coffea canephora HOM05D002336 ORTHO05D002526 2.1e-25 120.6 196 41.3
Glyma.09G016100 Glycine max HOM05D002336 ORTHO05D002526 3.6e-25 119.8 191 44.5
BraA02t08164Z Brassica rapa HOM05D002336 ORTHO05D002526 1.4e-24 117.9 199 40.2
ECA248G0907 Erigeron canadensis HOM05D002336 ORTHO05D002526 1.4e-24 117.9 181 45.9
TWI38G0736 Tripterygium wilfordii HOM05D002336 ORTHO05D002526 1.8e-24 117.5 195 44.6
SGA_v2.0_scaffold7G03662 Striga asiatica HOM05D002336 ORTHO05D002526 3.1e-24 116.7 179 42.5
Gorai.010G190700 Gossypium raimondii HOM05D002336 ORTHO05D002526 5.2e-24 115.9 193 43.0
Gohir.D06G163600 Gossypium hirsutum HOM05D002336 ORTHO05D002526 6.8e-24 115.5 193 43.0
arahy.Tifrunner.gnm1.ann1.WK75UE Arachis hypogaea HOM05D002336 ORTHO05D002526 8.9e-24 115.2 189 41.8
Gohir.A06G157300 Gossypium hirsutum HOM05D002336 ORTHO05D002526 8.9e-24 115.2 193 43.0
Lj6g0012975 Lotus japonicus HOM05D002336 ORTHO05D002526 1.2e-23 114.8 180 45.0
arahy.Tifrunner.gnm1.ann1.7YIN9J Arachis hypogaea HOM05D002336 ORTHO05D002526 1.5e-23 114.4 189 41.3
Rhsim08G0216900 Rhododendron simsii HOM05D002659 ORTHO05D002526 2.0e-23 114.0 179 42.5
Rhsim13G0138400 Rhododendron simsii HOM05D002336 ORTHO05D002526 2.0e-23 114.0 201 42.3
ECA220G0003 Erigeron canadensis HOM05D002336 ORTHO05D002526 3.4e-23 113.2 133 49.6
Actinidia02276 Actinidia chinensis HOM05D002336 ORTHO05D002526 7.5e-23 112.1 175 45.1
QL05p066607 Quercus lobata HOM05D002336 ORTHO05D002526 7.5e-23 112.1 192 41.1
VMungo0540G1254 Vigna mungo HOM05D002336 ORTHO05D002526 7.5e-23 112.1 192 43.2
AUR62017630 Chenopodium quinoa HOM05D002336 ORTHO05D002526 9.9e-23 111.7 175 42.9
Phvul.006G135800 Phaseolus vulgaris HOM05D002336 ORTHO05D002526 9.9e-23 111.7 192 42.7
Oeu025979.1 Olea europaea HOM05D002336 ORTHO05D002526 1.3e-22 111.3 177 44.1
Aa31sc504G30 Aethionema arabicum HOM05D002336 ORTHO05D002526 2.9e-22 110.2 197 38.6
Hund21625 Selenicereus undatus HOM05D002336 ORTHO05D002526 2.9e-22 110.2 157 45.2
Lalb_Chr20g0119621 Lupinus albus HOM05D002336 ORTHO05D002526 4.9e-22 109.4 190 42.1
COL.COLO4_31953 Corchorus olitorius HOM05D002336 ORTHO05D002526 6.4e-22 109.0 201 42.3
Glyma.15G121800 Glycine max HOM05D002336 ORTHO05D002526 1.1e-21 108.2 192 42.2
unitig_32.g11410 Utricularia gibba HOM05D002336 ORTHO05D002526 1.9e-21 107.5 191 40.8
Thecc.06G242900 Theobroma cacao HOM05D002336 ORTHO05D002526 2.4e-21 107.1 207 41.1
Sc17g0008060 Simmondsia chinensis HOM05D002336 ORTHO05D002526 3.2e-21 106.7 160 41.2
BolC2t10989H Brassica oleracea HOM05D000111 ORTHO05D007071 5.4e-21 105.9 179 39.1
Lalb_Chr18g0057441 Lupinus albus HOM05D002336 ORTHO05D002526 5.4e-21 105.9 190 40.5
Carub.0007s2571 Capsella rubella HOM05D002336 ORTHO05D002526 7.1e-21 105.5 187 41.7
AL7G39320 Arabidopsis lyrata HOM05D002336 ORTHO05D002526 2.1e-20 104.0 186 40.3
Migut.M01463 Erythranthe guttata HOM05D002336 ORTHO05D002526 3.5e-20 103.2 195 41.0
QL03p035757 Quercus lobata HOM05D002336 ORTHO05D002526 3.5e-20 103.2 190 40.0
Nn1g07725 Nelumbo nucifera HOM05D002336 ORTHO05D002526 2.3e-19 100.5 171 39.8
vmacro03592 Vaccinium macrocarpon HOM05D002336 ORTHO05D002526 3.0e-19 100.1 200 38.0
PSO210G5018 Papaver somniferum HOM05D002336 ORTHO05D002526 8.6e-19 98.6 209 35.4
Duzib235G0330 Durio zibethinus HOM05D002336 ORTHO05D002526 2.5e-18 97.1 224 37.9
FvH4_7g29850 Fragaria vesca HOM05D002813 ORTHO05D003203 3.3e-18 96.7 47 97.9
FAN06G0128 Fragaria x ananassa HOM05D002813 ORTHO05D003203 3.3e-18 96.7 47 97.9
FAN06G0370 Fragaria x ananassa HOM05D002813 ORTHO05D003203 3.3e-18 96.7 47 97.9
FAN14G5169 Fragaria x ananassa HOM05D002813 ORTHO05D003203 3.3e-18 96.7 47 97.9
FAN25G2464 Fragaria x ananassa HOM05D002813 ORTHO05D003203 3.3e-18 96.7 47 97.9
SGA_v2.0_scaffold186G40142 Striga asiatica HOM05D002336 ORTHO05D002526 3.3e-18 96.7 167 41.3
AUR62014931 Chenopodium quinoa HOM05D002336 ORTHO05D002526 5.6e-18 95.9 212 37.7
Oeu031381.1 Olea europaea HOM05D002336 ORTHO05D002526 5.6e-18 95.9 156 42.9
Duzib235G1184 Durio zibethinus HOM05D002336 ORTHO05D002526 7.3e-18 95.5 189 39.2
Cpa.g.sc27.205 Carica papaya HOM05D002336 ORTHO05D002526 9.5e-18 95.1 141 48.2
MBI19_g01939_MAGBIO Magnolia biondii HOM05D002336 ORTHO05D002526 1.2e-17 94.7 169 40.8
PSO210G4730 Papaver somniferum HOM05D002336 ORTHO05D002526 1.2e-17 94.7 197 36.5
MBI17_g08176_MAGBIO Magnolia biondii HOM05D002336 ORTHO05D002526 1.6e-17 94.4 193 36.8
CARHR290530 Cardamine hirsuta HOM05D002336 ORTHO05D002526 3.6e-17 93.2 183 37.7
CDE07G0676 Ceratophyllum demersum HOM05D002336 ORTHO05D002526 3.6e-17 93.2 114 45.6
Zm00001eb189090 Zea mays HOM05D002336 ORTHO05D002526 8.1e-17 92.0 110 42.7
FAN21G3192 Fragaria x ananassa HOM05D002378 ORTHO05D002936 1.4e-16 91.3 50 92.0
HanXRQChr01g0005731 Helianthus annuus HOM05D002336 ORTHO05D002526 2.4e-16 90.5 98 49.0
Lsat_1_v5_gn_1_130320 Lactuca sativa HOM05D002176 ORTHO05D002598 5.2e-16 89.4 142 45.1
Aqoxy3G03324 Aquilegia oxysepala HOM05D002336 ORTHO05D002526 1.2e-15 88.2 215 34.4
Lj5g0017254 Lotus japonicus HOM05D002336 ORTHO05D002526 1.7e-14 84.3 84 53.6
DCAR_019144 Daucus carota HOM05D002336 ORTHO05D002526 2.9e-14 83.6 113 50.4
Os02g0723300 Oryza sativa ssp. japonica HOM05D002336 ORTHO05D002526 2.9e-14 83.6 155 36.8
ECA149G0002 Erigeron canadensis HOM05D002336 ORTHO05D002526 8.4e-14 82.0 154 42.9
ATR1128G075 Amborella trichopoda HOM05D002336 ORTHO05D002526 4.2e-13 79.7 124 40.3
ATR0751G251 Amborella trichopoda HOM05D002336 ORTHO05D002526 5.4e-13 79.3 178 33.7
Nitab4.5_0000147g0240 Nicotiana tabacum HOM05D002336 ORTHO05D002526 7.1e-13 79.0 155 38.7
FAN15G1644 Fragaria x ananassa HOM05D002378 ORTHO05D002936 9.2e-13 78.6 142 44.4
FAN03G2769 Fragaria x ananassa HOM05D002378 ORTHO05D002936 1.2e-12 78.2 135 46.7
FAN24G2051 Fragaria x ananassa HOM05D002378 ORTHO05D002936 6.0e-12 75.9 141 44.0
HPP92_000509 Vanilla planifolia HOM05D002336 ORTHO05D002526 1.0e-11 75.1 179 38.5
TAR627G0858 Trochodendron aralioides HOM05D007127 ORTHO05D008803 8.7e-11 72.0 149 42.3
FAN15G1866 Fragaria x ananassa HOM05D000055 ORTHO05D001675 2.6e-07 60.5 34 82.4
Peaxi162Scf00604g00013 Petunia axillaris HOM05D002336 ORTHO05D002526 9.9e-07 58.5 75 42.7
BcaB01g05556 Brassica carinata HOM05D002336 ORTHO05D002526 6.4e-06 55.8 96 33.3


User provided reference genes

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