Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G2416 Fragaria x ananassa HOM05D005673 ORTHO05D007081 2.8e-143 511.9 254 100.0
FAN03G2886 Fragaria x ananassa HOM05D005673 ORTHO05D007081 4.0e-142 508.1 254 98.8
FvH4_7g20560 Fragaria vesca HOM05D005673 ORTHO05D007081 8.9e-142 506.9 254 98.4
FAN06G0951 Fragaria x ananassa HOM05D005673 ORTHO05D007081 8.9e-142 506.9 254 98.4
FAN10G0505 Fragaria x ananassa HOM05D005673 ORTHO05D007081 1.2e-141 506.5 254 98.0
FAN01G1496 Fragaria x ananassa HOM05D005673 ORTHO05D007081 7.1e-139 497.3 254 97.2
FAN01G2008 Fragaria x ananassa HOM05D005673 ORTHO05D007081 7.1e-139 497.3 254 97.2
RcHm_v2.0_Chr1g0364441 Rosa chinensis HOM05D005673 ORTHO05D007081 1.6e-130 469.5 254 90.6
MD01G1114500 Malus domestica HOM05D005673 ORTHO05D007081 1.4e-102 376.7 251 79.3
MD07G1182600 Malus domestica HOM05D005673 ORTHO05D007081 1.2e-101 373.6 251 78.9
Prupe.2G221200 Prunus persica HOM05D005673 ORTHO05D007081 3.3e-96 355.5 213 82.6
Ciclev10032487m.g Citrus clementina HOM05D005673 ORTHO05D007081 1.0e-92 344.0 257 68.5
Duzib114G0197 Durio zibethinus HOM05D005673 ORTHO05D007081 2.9e-92 342.4 255 68.6
Manes.07G105200 Manihot esculenta HOM05D005673 ORTHO05D007081 6.5e-92 341.3 263 66.5
COL.COLO4_08204 Corchorus olitorius HOM05D005673 ORTHO05D007081 3.2e-91 339.0 261 67.0
Potri.008G046400 Populus trichocarpa HOM05D005673 ORTHO05D007081 3.2e-91 339.0 263 65.8
QL08p057314 Quercus lobata HOM05D005673 ORTHO05D007081 7.2e-91 337.8 258 67.8
Thecc.10G064600 Theobroma cacao HOM05D005673 ORTHO05D007081 1.6e-90 336.7 255 66.3
Actinidia38234 Actinidia chinensis HOM05D005673 ORTHO05D007081 2.7e-90 335.9 256 67.2
Cfa001572 Carpinus fangiana HOM05D005673 ORTHO05D007081 3.6e-90 335.5 258 67.1
CANSAT11G2273 Cannabis sativa HOM05D005673 ORTHO05D007081 4.7e-90 335.1 250 67.2
Haze_16957 Corylus avellana HOM05D005673 ORTHO05D007081 4.7e-90 335.1 258 66.7
GSVIVG01032643001 Vitis vinifera HOM05D005673 ORTHO05D007081 1.0e-89 334.0 251 66.5
Gorai.010G203600 Gossypium raimondii HOM05D005673 ORTHO05D007081 1.8e-89 333.2 252 67.9
Gohir.D06G174000 Gossypium hirsutum HOM05D005673 ORTHO05D007081 5.1e-89 331.6 252 67.5
CiPaw.02G177700 Carya illinoinensis HOM05D005673 ORTHO05D007081 3.3e-88 328.9 258 65.5
Sabra08G0032600 Salix brachista HOM05D005673 ORTHO05D007081 3.7e-87 325.5 263 63.9
Gohir.A06G179004 Gossypium hirsutum HOM05D005673 ORTHO05D007081 4.8e-87 325.1 252 66.7
Cfa005598 Carpinus fangiana HOM05D005673 ORTHO05D007081 1.1e-86 323.9 258 65.5
Actinidia03012 Actinidia chinensis HOM05D005673 ORTHO05D007081 1.2e-85 320.5 256 65.2
CSS0045417 Camellia sinensis var. sinensis HOM05D005673 ORTHO05D007081 5.9e-85 318.2 258 65.1
PSO384G5123 Papaver somniferum HOM05D005673 ORTHO05D007081 1.0e-84 317.4 256 65.2
PSO339G1442 Papaver somniferum HOM05D005673 ORTHO05D007081 3.8e-84 315.5 256 64.1
CSS0019421 Camellia sinensis var. sinensis HOM05D005673 ORTHO05D007081 5.0e-84 315.1 258 64.3
TWI38G1168 Tripterygium wilfordii HOM05D005673 ORTHO05D007081 1.2e-82 310.5 257 62.6
Lalb_Chr19g0126251 Lupinus albus HOM05D005673 ORTHO05D007081 2.7e-82 309.3 255 60.8
Lj1A928T62 Lonicera japonica HOM05D005673 ORTHO05D007081 4.7e-82 308.5 259 62.5
MBI14_g17793_MAGBIO Magnolia biondii HOM05D005673 ORTHO05D007081 4.7e-82 308.5 253 66.0
Lj1A926T37 Lonicera japonica HOM05D005673 ORTHO05D007081 1.4e-81 307.0 259 62.2
Aqoxy4G03141 Aquilegia oxysepala HOM05D005673 ORTHO05D007081 3.0e-81 305.8 260 61.2
CsaV3_5G006400 Cucumis sativus L. HOM05D005673 ORTHO05D007081 2.6e-80 302.8 256 59.8
THA.LOC104825722 Tarenaya hassleriana HOM05D005673 ORTHO05D007081 3.3e-80 302.4 260 59.6
SalBow4G0159 Salvia bowleyana HOM05D005673 ORTHO05D007081 1.7e-79 300.1 252 59.5
Nitab4.5_0000575g0020 Nicotiana tabacum HOM05D005673 ORTHO05D007081 3.7e-79 298.9 254 61.4
Nitab4.5_0002078g0030 Nicotiana tabacum HOM05D005673 ORTHO05D007081 3.7e-79 298.9 254 61.8
MSTRG.9191 Avicennia marina HOM05D005673 ORTHO05D007081 6.3e-79 298.1 260 58.5
ClCG02G013770 Citrullus lanatus HOM05D005673 ORTHO05D007081 1.1e-78 297.4 259 58.3
Lsat_1_v5_gn_8_21281 Lactuca sativa HOM05D005673 ORTHO05D007081 4.1e-78 295.4 261 60.5
MELO3C011718.2 Cucumis melo HOM05D005673 ORTHO05D007081 5.3e-78 295.0 257 58.4
HanXRQChr08g0219361 Helianthus annuus HOM05D005673 ORTHO05D007081 9.1e-78 294.3 253 60.9
TAR623G0755 Trochodendron aralioides HOM05D005673 ORTHO05D007081 1.2e-77 293.9 218 69.3
PGSC0003DMG400002916 Solanum tuberosum HOM05D005673 ORTHO05D007081 1.6e-77 293.5 252 60.3
ECA233G0150 Erigeron canadensis HOM05D005673 ORTHO05D007081 2.0e-77 293.1 248 60.1
Lj1g0007847 Lotus japonicus HOM05D005673 ORTHO05D007081 2.0e-77 293.1 253 58.1
SGA_v2.0_scaffold62G21443 Striga asiatica HOM05D005673 ORTHO05D007081 2.7e-77 292.7 249 59.8
CAN.G551.89 Capsicum annuum HOM05D005673 ORTHO05D007081 4.5e-77 292.0 253 59.7
Rhsim03G0121300 Rhododendron simsii HOM05D005673 ORTHO05D007081 1.0e-76 290.8 228 64.0
Cc09_g02320 Coffea canephora HOM05D005673 ORTHO05D007081 2.5e-75 286.2 257 57.2
Solyc12g009500.2 Solanum lycopersicum HOM05D005673 ORTHO05D007081 2.5e-75 286.2 252 59.5
Sed0006326 Sechium edule HOM05D005673 ORTHO05D007081 3.2e-75 285.8 258 57.8
Sopen12g004500 Solanum pennellii HOM05D005673 ORTHO05D007081 4.2e-75 285.4 252 58.7
Ca_07421_v3 Cicer arietinum L. HOM05D005673 ORTHO05D007081 5.5e-75 285.0 250 57.6
PGR142G2170 Punica granatum HOM05D005673 ORTHO05D007081 5.5e-75 285.0 257 56.0
Hund22450 Selenicereus undatus HOM05D005673 ORTHO05D007081 5.5e-75 285.0 262 58.4
CARHR261110 Cardamine hirsuta HOM05D005673 ORTHO05D007081 9.4e-75 284.3 260 55.8
AT4G10090 Arabidopsis thaliana HOM05D005673 ORTHO05D007081 2.7e-74 282.7 260 55.0
arahy.Tifrunner.gnm1.ann1.R12QR1 Arachis hypogaea HOM05D005673 ORTHO05D007081 2.7e-74 282.7 259 56.8
AUR62036006 Chenopodium quinoa HOM05D005673 ORTHO05D007081 3.6e-74 282.3 263 58.2
BcaB01g01447 Brassica carinata HOM05D005673 ORTHO05D007081 8.0e-74 281.2 263 56.3
Thhalv10028887m.g Eutrema salsugineum HOM05D005673 ORTHO05D007081 1.0e-73 280.8 261 55.6
arahy.Tifrunner.gnm1.ann1.YNZN7C Arachis hypogaea HOM05D005673 ORTHO05D007081 1.4e-73 280.4 259 56.8
Sp6g07430 Schrenkiella parvula HOM05D005673 ORTHO05D007081 1.8e-73 280.0 260 55.0
Ah.16g108000 Amaranthus hybridus HOM05D005673 ORTHO05D007081 4.0e-73 278.9 271 55.4
AL6G43874 Arabidopsis lyrata HOM05D005673 ORTHO05D007081 4.0e-73 278.9 260 54.2
Eucgr.G02786 Eucalyptus grandis HOM05D005673 ORTHO05D007081 8.8e-73 277.7 257 56.8
TPR.G10191 Trifolium pratense HOM05D005673 ORTHO05D007081 1.2e-72 277.3 251 56.6
BcaC04g21010 Brassica carinata HOM05D005673 ORTHO05D007081 2.0e-72 276.6 254 56.7
C09p36690 Brassica napus HOM05D005673 ORTHO05D007081 2.0e-72 276.6 254 56.7
BolC9t56500H Brassica oleracea HOM05D005673 ORTHO05D007081 2.0e-72 276.6 254 56.7
Carub.0006s2866 Capsella rubella HOM05D005673 ORTHO05D007081 4.4e-72 275.4 261 54.4
A09p28870 Brassica napus HOM05D005673 ORTHO05D007081 9.8e-72 274.2 254 56.3
Atru.BG.271.p Acer truncatum HOM05D005673 ORTHO05D007081 1.3e-71 273.9 237 62.4
Glyma.08G340700 Glycine max HOM05D005673 ORTHO05D007081 4.8e-71 271.9 258 55.0
Phvul.008G138600 Phaseolus vulgaris HOM05D005673 ORTHO05D007081 6.3e-71 271.6 259 54.4
DCAR_015256 Daucus carota HOM05D005673 ORTHO05D007081 7.0e-70 268.1 311 49.5
EL10Ac2g03532 Beta vulgaris HOM05D005673 ORTHO05D007081 2.0e-69 266.5 266 55.6
Aa31LG9G11910 Aethionema arabicum HOM05D005673 ORTHO05D007081 1.3e-68 263.8 263 52.5
Sc20g0002250 Simmondsia chinensis HOM05D005673 ORTHO05D007081 1.1e-67 260.8 224 60.3
vmacro07099 Vaccinium macrocarpon HOM05D005673 ORTHO05D007081 7.2e-67 258.1 225 61.3
Nn2g10602 Nelumbo nucifera HOM05D005673 ORTHO05D007081 3.0e-65 252.7 229 59.8
Oeu008278.1 Olea europaea HOM05D005673 ORTHO05D007081 2.2e-63 246.5 219 56.6
CDE04G2944 Ceratophyllum demersum HOM05D005673 ORTHO05D007081 3.1e-62 242.7 249 51.8
HPP92_012063 Vanilla planifolia HOM05D005673 ORTHO05D007081 1.2e-61 240.7 266 48.9
Migut.F02013 Erythranthe guttata HOM05D005673 ORTHO05D007081 3.5e-61 239.2 239 53.6
MD00G1166800 Malus domestica HOM05D005673 ORTHO05D007081 5.6e-59 231.9 189 68.3
Zm00001eb378810 Zea mays HOM05D005673 ORTHO05D007081 1.2e-58 230.7 249 51.0
Os03g0284000 Oryza sativa ssp. japonica HOM05D005673 ORTHO05D007081 1.6e-58 230.3 249 51.0
Atru.chr12.608 Acer truncatum HOM05D005673 ORTHO05D007081 3.6e-58 229.2 164 72.6
AUR62041616 Chenopodium quinoa HOM05D005673 ORTHO05D007081 9.8e-56 221.1 261 48.3
Dinv25934 Davidia involucrata HOM05D005673 ORTHO05D007081 2.2e-55 219.9 164 68.3
Peaxi162Scf00170g00413 Petunia axillaris HOM05D005673 ORTHO05D007081 3.2e-54 216.1 251 49.4
Hma1.2p1_0348F.1_g131860 Hydrangea macrophylla HOM05D005673 ORTHO05D007081 1.2e-48 197.6 153 63.4
SGA_v2.0_scaffold17G08196 Striga asiatica HOM05D005673 ORTHO05D007081 7.8e-45 184.9 155 58.7
Medtr7g047440 Medicago truncatula HOM05D005673 ORTHO05D007081 1.2e-42 177.6 157 53.5
Medtr7g451610 Medicago truncatula HOM05D005673 ORTHO05D007081 1.2e-42 177.6 157 53.5
Medtr7g451710 Medicago truncatula HOM05D005673 ORTHO05D007081 1.2e-42 177.6 157 53.5
Mapoly0003s0199 Marchantia polymorpha HOM05D005673 ORTHO05D007081 2.6e-40 169.9 252 39.7
VMungo1383G1385 Vigna mungo HOM05D005673 ORTHO05D007081 4.1e-38 162.5 154 51.9
unitig_37.g12298 Utricularia gibba HOM05D005673 ORTHO05D007081 2.5e-35 153.3 124 57.3
HPP92_012075 Vanilla planifolia HOM05D005673 ORTHO05D007081 4.3e-35 152.5 148 51.4
Pp3c2_31740 Physcomitrium patens HOM05D005673 ORTHO05D007081 1.2e-34 151.0 261 34.5
Psat3g152960 Pisum sativum HOM05D005673 ORTHO05D007081 1.6e-34 150.6 117 59.8
AagrBONN_evm.TU.Sc2ySwM_362.1467 Anthoceros agrestis HOM05D005673 ORTHO05D007081 1.8e-33 147.1 231 39.4
SMO347G0616 Selaginella moellendorffii HOM05D005673 ORTHO05D007081 2.0e-32 143.7 212 41.0
Psat0s9937g0040 Pisum sativum HOM05D005673 ORTHO05D007081 5.4e-30 135.6 109 63.3
PSO713G0026 Papaver somniferum HOM05D005673 ORTHO05D007081 1.6e-29 134.0 161 49.1
Aqoxy4G03136 Aquilegia oxysepala HOM05D005673 ORTHO05D007081 3.4e-24 116.3 160 45.6
Psat3g152920 Pisum sativum HOM05D005673 ORTHO05D007081 3.8e-23 112.8 96 59.4
unitig_37.g12299 Utricularia gibba HOM05D005673 ORTHO05D007081 6.0e-21 105.5 96 54.2
Psat3g153040 Pisum sativum HOM05D005673 ORTHO05D007081 1.0e-20 104.8 96 56.2
HanXRQChr02g0043631 Helianthus annuus HOM05D005673 ORTHO05D007081 9.6e-19 98.2 94 52.1
Hma1.2p1_0348F.1_g131840 Hydrangea macrophylla HOM05D005673 ORTHO05D007081 9.0e-17 91.7 78 64.1
VMungo1383G3547 Vigna mungo HOM05D005673 ORTHO05D007081 3.8e-15 86.3 76 59.2
Cpa.g.c44350 Carica papaya HOM05D005673 ORTHO05D007081 2.4e-14 83.6 76 57.9
Cpa.g.sc5360.1 Carica papaya HOM05D005673 ORTHO05D007081 4.2e-14 82.8 48 83.3
Medtr7g050450 Medicago truncatula HOM05D005673 ORTHO05D007081 7.1e-14 82.0 156 34.6
CBR_g23354 Chara braunii HOM05D005673 ORTHO05D007081 1.0e-12 78.2 184 32.1
HanXRQChr13g0394111 Helianthus annuus HOM05D005673 ORTHO05D007081 3.0e-12 76.6 67 56.7
MD01G1114600 Malus domestica HOM05D005673 ORTHO05D007081 3.0e-12 76.6 55 80.0
BcaB04g18418 Brassica carinata HOM05D005673 ORTHO05D007081 3.3e-11 73.2 97 42.3
Oeu008279.1 Olea europaea HOM05D005673 ORTHO05D007081 7.1e-06 55.5 41 53.7


User provided reference genes

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