Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G2021 Fragaria x ananassa HOM05D013146 ORTHO05D004092 0.0e+00 1412.9 754 100.0
FAN06G1386 Fragaria x ananassa HOM05D013146 ORTHO05D004092 0.0e+00 1083.2 602 95.3
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 5.3e-259 897.9 729 70.9
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 9.1e-259 897.1 730 71.2
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.3e-230 802.7 632 73.7
FAN10G2986 Fragaria x ananassa HOM05D013146 ORTHO05D004092 3.2e-227 792.3 723 66.5
FAN10G2376 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.7e-220 770.0 714 65.7
FvH4_7g29491 Fragaria vesca HOM05D013146 ORTHO05D004092 2.5e-187 659.8 354 99.2
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 3.7e-143 513.1 688 52.6
RcHm_v2.0_Chr1g0377291 Rosa chinensis HOM05D013146 ORTHO05D004092 1.2e-141 508.1 768 47.8
FvH4_7g29480 Fragaria vesca HOM05D013146 ORTHO05D004092 2.8e-127 460.3 490 59.6
FAN06G3443 Fragaria x ananassa HOM05D013146 ORTHO05D004092 6.3e-127 459.1 488 59.8
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 2.0e-56 224.9 624 36.7
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 1.5e-51 208.8 635 35.1
Sabra15G0153700 Salix brachista HOM05D004189 ORTHO05D004092 2.8e-50 204.5 633 37.0
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 1.3e-47 195.7 670 34.8
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 6.1e-45 186.8 668 33.8
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 3.3e-43 181.0 672 33.8
Duzib205G0656 Durio zibethinus HOM05D004189 ORTHO05D004092 1.4e-36 159.1 665 30.2
MD07G1268800 Malus domestica HOM05D004189 ORTHO05D004092 2.3e-36 158.3 791 28.2
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 2.6e-35 154.8 687 30.4
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 5.7e-35 153.7 666 30.3
Lalb_Chr19g0130831 Lupinus albus HOM05D004189 ORTHO05D004092 2.8e-34 151.4 378 38.6
QL09p014192 Quercus lobata HOM05D004189 ORTHO05D004092 3.7e-34 151.0 647 30.6
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 1.1e-33 149.4 641 30.7
FAN25G0782 Fragaria x ananassa HOM05D015928 ORTHO05D204829 7.0e-33 146.7 99 93.9
Cpa.g.sc107.53 Carica papaya HOM05D004189 ORTHO05D004092 2.7e-32 144.8 579 30.1
Aqoxy7G00356 Aquilegia oxysepala HOM05D004189 ORTHO05D004092 1.0e-31 142.9 694 29.7
AT4G25580 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 1.0e-31 142.9 670 30.0
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 6.5e-31 140.2 625 29.6
CAN.G490.32 Capsicum annuum HOM05D004189 ORTHO05D004092 8.5e-31 139.8 221 44.3
Potri.015G143950 Populus trichocarpa HOM05D004189 ORTHO05D004092 1.9e-30 138.7 634 31.2
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 3.2e-30 137.9 566 29.2
arahy.Tifrunner.gnm1.ann1.EQ3RBX Arachis hypogaea HOM05D004189 ORTHO05D004092 7.2e-30 136.7 688 30.5
COL.COLO4_14310 Corchorus olitorius HOM05D004189 ORTHO05D004092 7.2e-30 136.7 415 34.9
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 2.7e-29 134.8 379 33.2
Sc19g0001510 Simmondsia chinensis HOM05D004189 ORTHO05D004092 6.1e-29 133.7 697 29.1
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 1.0e-28 132.9 661 29.2
arahy.Tifrunner.gnm1.ann1.E2ZRS1 Arachis hypogaea HOM05D004189 ORTHO05D004092 1.8e-28 132.1 672 30.5
Solyc03g025810.4 Solanum lycopersicum HOM05D004189 ORTHO05D004092 4.0e-28 131.0 244 41.4
Carub.0007s1540 Capsella rubella HOM05D004189 ORTHO05D004092 5.7e-27 127.1 602 30.7
ECA238G1803 Erigeron canadensis HOM05D004189 ORTHO05D004092 9.8e-27 126.3 589 29.7
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 2.8e-26 124.8 283 39.2
PGR042G0303 Punica granatum HOM05D004189 ORTHO05D004092 4.8e-26 124.0 669 29.0
Eucgr.A02790 Eucalyptus grandis HOM05D004189 ORTHO05D004092 6.3e-26 123.6 662 28.4
Sopen03g004620 Solanum pennellii HOM05D004189 ORTHO05D004092 6.3e-26 123.6 249 39.8
QL09p014207 Quercus lobata HOM05D004189 ORTHO05D004092 3.1e-25 121.3 696 28.7
PGSC0003DMG400014293 Solanum tuberosum HOM05D004189 ORTHO05D004092 9.1e-25 119.8 255 40.0
Dinv28441 Davidia involucrata HOM05D004189 ORTHO05D004092 5.9e-24 117.1 570 30.2
TWI23G0464 Tripterygium wilfordii HOM05D004189 ORTHO05D004092 5.9e-24 117.1 553 29.5
FAN25G0870 Fragaria x ananassa HOM05D015928 ORTHO05D202941 7.7e-24 116.7 89 70.8
C07p54440 Brassica napus HOM05D004189 ORTHO05D004092 5.0e-23 114.0 623 26.5
Glyma.16G193200 Glycine max HOM05D004189 ORTHO05D004092 5.0e-23 114.0 275 36.7
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 1.1e-22 112.8 602 29.6
FAN23G2121 Fragaria x ananassa HOM05D015928 ORTHO05D209195 2.5e-22 111.7 99 64.6
CARHR233000 Cardamine hirsuta HOM05D004189 ORTHO05D004092 3.2e-22 111.3 636 27.7
CSS0007027 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 4.2e-22 110.9 502 28.5
TAR374G0772 Trochodendron aralioides HOM05D004189 ORTHO05D004092 5.5e-22 110.5 596 27.9
PSO478G0985 Papaver somniferum HOM05D004189 ORTHO05D004092 7.2e-22 110.2 665 29.0
Rhsim03G0180900 Rhododendron simsii HOM05D004189 ORTHO05D004092 1.6e-21 109.0 564 28.0
vmacro06681 Vaccinium macrocarpon HOM05D004189 ORTHO05D004092 1.6e-21 109.0 621 28.3
BolC7t45929H Brassica oleracea HOM05D004189 ORTHO05D004092 2.1e-21 108.6 623 26.5
CSS0002108 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 2.1e-21 108.6 347 32.0
Glyma.09G139600 Glycine max HOM05D004189 ORTHO05D004092 2.1e-21 108.6 278 37.1
Carub.0008s1240 Capsella rubella HOM05D004189 ORTHO05D004092 2.7e-21 108.2 633 27.3
FAN12G2060 Fragaria x ananassa HOM05D015928 ORTHO05D204972 3.6e-21 107.8 63 88.9
HanXRQChr07g0207021 Helianthus annuus HOM05D004189 ORTHO05D004092 1.8e-20 105.5 654 26.1
FAN18G1284 Fragaria x ananassa HOM05D015928 ORTHO05D025554 4.0e-20 104.4 68 83.8
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 1.5e-19 102.4 297 34.7
THA.LOC104811978 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 1.5e-19 102.4 617 29.3
BraA03t14684Z Brassica rapa HOM05D004189 ORTHO05D004092 9.8e-19 99.8 615 26.0
Aa31LG3G8720 Aethionema arabicum HOM05D004189 ORTHO05D004092 1.3e-18 99.4 218 36.2
Glyma.16G189900 Glycine max HOM05D004189 ORTHO05D004092 1.3e-18 99.4 363 32.2
Prupe.2G294400 Prunus persica HOM05D004189 ORTHO05D004092 1.3e-18 99.4 731 27.6
Sp7g23610 Schrenkiella parvula HOM05D004189 ORTHO05D004092 1.3e-18 99.4 618 26.7
CANSAT21G0752 Cannabis sativa HOM05D004189 ORTHO05D004092 1.7e-18 99.0 388 29.4
BcaC06g32799 Brassica carinata HOM05D004189 ORTHO05D004092 2.2e-18 98.6 644 25.0
AUR62015982 Chenopodium quinoa HOM05D004189 ORTHO05D004092 2.8e-18 98.2 436 28.9
arahy.Tifrunner.gnm1.ann1.06RI6S Arachis hypogaea HOM05D004189 ORTHO05D004092 4.9e-18 97.4 665 26.6
A03p56110 Brassica napus HOM05D004189 ORTHO05D004092 4.9e-18 97.4 615 26.0
Thhalv10013021m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 4.9e-18 97.4 635 27.4
AT5G52300 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 8.3e-18 96.7 615 26.8
TPR.G14322 Trifolium pratense HOM05D004189 ORTHO05D004092 8.3e-18 96.7 688 27.2
AL8G26690 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 1.1e-17 96.3 597 27.1
AUR62021191 Chenopodium quinoa HOM05D004189 ORTHO05D004092 1.1e-17 96.3 419 29.1
CANSAT21G0725 Cannabis sativa HOM05D004189 ORTHO05D004092 1.4e-17 95.9 373 29.2
TPR.G10757 Trifolium pratense HOM05D004189 ORTHO05D004092 1.4e-17 95.9 205 39.0
FAN27G0806 Fragaria x ananassa HOM05D015928 ORTHO05D200410 1.8e-17 95.5 66 80.3
MBI18_g30543_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 9.2e-17 93.2 602 26.1
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 9.2e-17 93.2 263 33.5
arahy.Tifrunner.gnm1.ann1.UM41MD Arachis hypogaea HOM05D004189 ORTHO05D004092 2.7e-16 91.7 195 40.0
Migut.F00339 Erythranthe guttata HOM05D004189 ORTHO05D004092 4.5e-16 90.9 325 33.2
FAN25G1548 Fragaria x ananassa HOM05D015928 ORTHO05D200883 5.9e-16 90.5 54 87.0
EL10Ac3g05642 Beta vulgaris HOM05D004189 ORTHO05D004092 7.7e-16 90.1 522 27.0
Lj8A24G36 Lonicera japonica HOM05D004189 ORTHO05D004092 7.7e-16 90.1 332 31.0
DCAR_018199 Daucus carota HOM05D004189 ORTHO05D004092 1.0e-15 89.7 680 26.2
Phvul.007G069800 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 1.7e-15 89.0 248 37.1
Migut.F01119 Erythranthe guttata HOM05D004189 ORTHO05D004092 2.3e-15 88.6 571 26.6
arahy.Tifrunner.gnm1.ann1.4R9DEN Arachis hypogaea HOM05D001888 ORTHO05D001842 2.9e-15 88.2 662 26.9
Ah.07g207200 Amaranthus hybridus HOM05D032681 ORTHO05D004092 5.0e-15 87.4 423 27.7
Cfa008320 Carpinus fangiana HOM05D004189 ORTHO05D004092 2.5e-14 85.1 622 26.5
Ca_25745_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 3.3e-14 84.7 407 29.7
Phvul.004G117100 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 5.6e-14 84.0 110 53.6
Nn1g01463 Nelumbo nucifera HOM05D004189 ORTHO05D004092 7.3e-14 83.6 278 33.1
Glyma.20G158500 Glycine max HOM05D004189 ORTHO05D004092 9.5e-14 83.2 620 27.4
Glyma.10G236000 Glycine max HOM05D004189 ORTHO05D004092 1.6e-13 82.4 598 27.3
AL7G27520 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 2.8e-13 81.6 672 26.5
C02p19900 Brassica napus HOM05D004189 ORTHO05D004092 2.8e-13 81.6 624 25.5
BolC2t08123H Brassica oleracea HOM05D004189 ORTHO05D004092 2.8e-13 81.6 624 25.5
PSO782G3516 Papaver somniferum HOM05D064671 ORTHO05D004092 4.7e-13 80.9 280 35.0
Aa31LG7G12260 Aethionema arabicum HOM05D004189 ORTHO05D004092 6.1e-13 80.5 587 26.4
Thhalv10024860m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 8.0e-13 80.1 573 25.3
FAN09G4538 Fragaria x ananassa HOM05D015928 ORTHO05D198839 8.0e-13 80.1 43 95.3
FAN11G2108 Fragaria x ananassa HOM05D015928 ORTHO05D204178 8.0e-13 80.1 43 95.3
Nn6g33499 Nelumbo nucifera HOM05D004189 ORTHO05D004092 1.8e-12 79.0 615 27.0
Medtr6g045273 Medicago truncatula HOM05D004189 ORTHO05D004092 2.3e-12 78.6 271 32.5
A02p11900 Brassica napus HOM05D004189 ORTHO05D004092 3.0e-12 78.2 603 25.7
BcaB05g21946 Brassica carinata HOM05D004189 ORTHO05D004092 6.8e-12 77.0 620 24.0
PSO782G3290 Papaver somniferum HOM05D057890 ORTHO05D004092 6.8e-12 77.0 305 32.1
CARHR265280 Cardamine hirsuta HOM05D004189 ORTHO05D004092 1.5e-11 75.9 632 25.3
Lj2g0010006 Lotus japonicus HOM05D004189 ORTHO05D004092 2.0e-11 75.5 261 31.4
PSO478G2886 Papaver somniferum HOM05D064671 ORTHO05D004092 3.4e-11 74.7 319 33.5
Sp6g14560 Schrenkiella parvula HOM05D004189 ORTHO05D004092 3.4e-11 74.7 612 25.3
BcaC03g14545 Brassica carinata HOM05D004189 ORTHO05D004092 5.7e-11 73.9 632 24.7
BraA03t10863Z Brassica rapa HOM05D004189 ORTHO05D004092 9.8e-11 73.2 145 40.0
PSO782G0005 Papaver somniferum HOM05D004189 ORTHO05D004092 9.8e-11 73.2 679 26.8
VMungo0720G0841 Vigna mungo HOM05D004189 ORTHO05D004092 9.8e-11 73.2 599 25.0
ECA233G5127 Erigeron canadensis HOM05D004189 ORTHO05D004092 2.2e-10 72.0 588 25.9
Medtr1g100627 Medicago truncatula HOM05D004189 ORTHO05D004092 2.2e-10 72.0 599 27.7
GSVIVG01028976001 Vitis vinifera HOM05D004189 ORTHO05D004092 2.9e-10 71.6 150 38.0
A03p15730 Brassica napus HOM05D004189 ORTHO05D004092 6.4e-10 70.5 228 31.6
Lj5g0019959 Lotus japonicus HOM05D004189 ORTHO05D004092 8.3e-10 70.1 677 23.6
CiPaw.03G106300 Carya illinoinensis HOM05D004189 ORTHO05D004092 1.4e-09 69.3 268 31.3
PSO478G0660 Papaver somniferum HOM05D057890 ORTHO05D004092 1.8e-09 68.9 341 30.5
ATR0680G076 Amborella trichopoda HOM05D004189 ORTHO05D004092 2.4e-09 68.6 546 24.4
CDE08G1026 Ceratophyllum demersum HOM05D004189 ORTHO05D004092 2.0e-08 65.5 306 31.4
Lsat_1_v5_gn_8_8621 Lactuca sativa HOM05D004189 ORTHO05D004092 2.0e-08 65.5 528 25.2
Ca_10770_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 2.7e-08 65.1 592 25.2
BraA08t34059Z Brassica rapa HOM05D002154 ORTHO05D002362 5.9e-08 63.9 118 38.1
ClCG09G012920 Citrullus lanatus HOM05D004189 ORTHO05D004092 1.0e-07 63.2 381 25.2
Lalb_Chr21g0305031 Lupinus albus HOM05D004189 ORTHO05D004092 1.0e-07 63.2 155 40.0
THA.LOC104800253 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 1.3e-07 62.8 589 25.3
A08p21090 Brassica napus HOM05D002154 ORTHO05D002362 1.7e-07 62.4 118 37.3
HanXRQChr06g0183811 Helianthus annuus HOM05D004189 ORTHO05D004092 1.7e-07 62.4 197 29.9
Hund11746 Selenicereus undatus HOM05D004189 ORTHO05D004092 1.7e-07 62.4 669 25.6
BcaC07g38200 Brassica carinata HOM05D004189 ORTHO05D004092 2.3e-07 62.0 116 37.1
BolC8t48624H Brassica oleracea HOM05D004189 ORTHO05D004092 2.3e-07 62.0 116 37.1
MELO3C003321.2 Cucumis melo HOM05D004189 ORTHO05D004092 2.3e-07 62.0 357 26.6
CsaV3_3G049950 Cucumis sativus L. HOM05D004189 ORTHO05D004092 3.9e-07 61.2 260 28.5
C08p09550 Brassica napus HOM05D002154 ORTHO05D002362 5.0e-07 60.8 116 36.2
BcaB03g12476 Brassica carinata HOM05D002154 ORTHO05D002362 8.6e-07 60.1 90 45.6
Psat0s2227g0040 Pisum sativum HOM05D004189 ORTHO05D004092 8.6e-07 60.1 205 33.2
Peaxi162Scf00481g00328 Petunia axillaris HOM05D006297 ORTHO05D007873 1.1e-06 59.7 134 34.3
GSVIVG01031399001 Vitis vinifera HOM05D006297 ORTHO05D007873 1.1e-06 59.7 93 43.0
Haze_13708 Corylus avellana HOM05D004189 ORTHO05D004092 1.9e-06 58.9 140 36.4
Glyma.16G183700 Glycine max HOM05D004189 ORTHO05D004092 2.5e-06 58.5 176 33.0
Glyma.16G192000 Glycine max HOM05D004189 ORTHO05D004092 2.5e-06 58.5 129 36.4
Glyma.16G192732 Glycine max HOM05D004189 ORTHO05D004092 4.3e-06 57.8 176 33.0


User provided reference genes

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