Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G1997 Fragaria x ananassa HOM05D004048 ORTHO05D004859 8.8e-182 640.2 331 100.0
FvH4_7g15371 Fragaria vesca HOM05D004048 ORTHO05D004859 1.0e-158 563.5 364 83.5
RcHm_v2.0_Chr1g0357711 Rosa chinensis HOM05D004048 ORTHO05D004859 5.6e-128 461.5 383 69.2
FAN10G3616 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.1e-126 457.2 387 69.5
RcHm_v2.0_Chr1g0357691 Rosa chinensis HOM05D004048 ORTHO05D004859 4.0e-118 428.7 379 64.1
FvH4_7g15370 Fragaria vesca HOM05D004048 ORTHO05D004859 1.5e-117 426.8 391 62.9
FAN06G1753 Fragaria x ananassa HOM05D004048 ORTHO05D004859 3.4e-117 425.6 391 62.7
FAN10G1698 Fragaria x ananassa HOM05D004048 ORTHO05D004859 4.5e-117 425.2 391 62.7
FAN10G3606 Fragaria x ananassa HOM05D004048 ORTHO05D004859 4.5e-117 425.2 391 62.7
FAN03G0096 Fragaria x ananassa HOM05D004048 ORTHO05D004859 4.9e-116 421.8 391 62.4
FAN06G0189 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.4e-115 420.2 389 62.0
Rhsim07G0205800 Rhododendron simsii HOM05D004048 ORTHO05D004859 2.4e-115 419.5 368 62.0
Prupe.2G177600 Prunus persica HOM05D004048 ORTHO05D004859 1.6e-114 416.8 369 62.3
MD07G1131200 Malus domestica HOM05D004048 ORTHO05D004859 6.0e-114 414.8 366 62.3
Dinv32522 Davidia involucrata HOM05D004048 ORTHO05D004859 1.8e-110 403.3 369 59.6
vmacro13227 Vaccinium macrocarpon HOM05D004048 ORTHO05D004859 5.8e-109 398.3 369 59.3
Hund27241 Selenicereus undatus HOM05D004048 ORTHO05D004859 1.3e-108 397.1 367 59.4
Manes.05G029300 Manihot esculenta HOM05D004048 ORTHO05D004859 1.7e-108 396.7 369 58.5
AL5G43890 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 3.8e-108 395.6 370 59.2
CSS0027402 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 3.8e-108 395.6 369 59.1
Sp5g01880 Schrenkiella parvula HOM05D004048 ORTHO05D004859 3.8e-108 395.6 369 59.6
CSS0029554 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 4.9e-108 395.2 369 59.1
Rhsim07G0206900 Rhododendron simsii HOM05D004048 ORTHO05D004859 6.5e-108 394.8 364 61.0
Ciclev10020577m.g Citrus clementina HOM05D004048 ORTHO05D004859 1.9e-107 393.3 370 58.1
BcaC08g45130 Brassica carinata HOM05D004048 ORTHO05D004859 7.1e-107 391.3 362 59.7
Haze_15565 Corylus avellana HOM05D004048 ORTHO05D004859 7.1e-107 391.3 387 55.8
Cpa.g.sc11.73 Carica papaya HOM05D004048 ORTHO05D004859 9.3e-107 391.0 364 58.8
DCAR_025214 Daucus carota HOM05D004048 ORTHO05D004859 9.3e-107 391.0 370 57.6
BolC6t37921H Brassica oleracea HOM05D004048 ORTHO05D004859 1.6e-106 390.2 362 59.4
BraA07t30196Z Brassica rapa HOM05D004048 ORTHO05D004859 1.6e-106 390.2 362 59.4
BcaB02g07374 Brassica carinata HOM05D004048 ORTHO05D004859 2.1e-106 389.8 367 58.6
AT3G61530 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 2.7e-106 389.4 369 58.5
Duzib268G0835 Durio zibethinus HOM05D004048 ORTHO05D004859 2.7e-106 389.4 367 57.8
A07p25550 Brassica napus HOM05D004048 ORTHO05D004859 3.5e-106 389.0 362 59.1
C06p27540 Brassica napus HOM05D004048 ORTHO05D004859 4.6e-106 388.7 362 59.1
HanXRQChr17g0562171 Helianthus annuus HOM05D004048 ORTHO05D004859 4.6e-106 388.7 368 59.2
Atru.chr7.1494 Acer truncatum HOM05D004048 ORTHO05D004859 7.9e-106 387.9 370 57.3
Potri.014G090500 Populus trichocarpa HOM05D004048 ORTHO05D004859 7.9e-106 387.9 370 57.6
Aa31LG10G15450 Aethionema arabicum HOM05D004048 ORTHO05D004859 1.3e-105 387.1 381 57.2
AUR62004413 Chenopodium quinoa HOM05D004048 ORTHO05D004859 1.3e-105 387.1 375 57.6
Lj9C589T5 Lonicera japonica HOM05D004048 ORTHO05D004859 1.3e-105 387.1 373 57.6
PSO170G0644 Papaver somniferum HOM05D004048 ORTHO05D004859 1.3e-105 387.1 366 57.9
PGR004G0897 Punica granatum HOM05D004048 ORTHO05D004859 1.3e-105 387.1 369 57.2
Thecc.01G352400 Theobroma cacao HOM05D004048 ORTHO05D004859 1.3e-105 387.1 368 57.6
QL04p055532 Quercus lobata HOM05D004048 ORTHO05D004859 1.8e-105 386.7 370 56.8
ClCG09G009090 Citrullus lanatus HOM05D004048 ORTHO05D004859 2.3e-105 386.3 339 61.4
TWI23G0617 Tripterygium wilfordii HOM05D004048 ORTHO05D004859 2.3e-105 386.3 362 58.0
PSO063G1481 Papaver somniferum HOM05D004048 ORTHO05D004859 3.0e-105 386.0 363 58.1
EL10Ac1g00354 Beta vulgaris HOM05D004048 ORTHO05D004859 3.9e-105 385.6 371 56.9
Cc02_g21240 Coffea canephora HOM05D004048 ORTHO05D004859 3.9e-105 385.6 361 58.7
COL.COLO4_12778 Corchorus olitorius HOM05D004048 ORTHO05D004859 3.9e-105 385.6 369 58.0
AT2G46110 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 6.7e-105 384.8 373 57.1
Eucgr.B01988 Eucalyptus grandis HOM05D004048 ORTHO05D004859 6.7e-105 384.8 367 57.5
Carub.0004s2881 Capsella rubella HOM05D004048 ORTHO05D004859 8.7e-105 384.4 373 56.8
Nn1g01686 Nelumbo nucifera HOM05D004048 ORTHO05D004859 1.5e-104 383.6 372 57.0
THA.LOC104817317 Tarenaya hassleriana HOM05D004048 ORTHO05D004859 1.5e-104 383.6 376 56.6
A09p53600 Brassica napus HOM05D004048 ORTHO05D004859 2.5e-104 382.9 368 57.6
Thhalv10001521m.g Eutrema salsugineum HOM05D004048 ORTHO05D004859 2.5e-104 382.9 374 56.4
Actinidia10075 Actinidia chinensis HOM05D004048 ORTHO05D004859 3.3e-104 382.5 374 56.4
Sabra14G0065600 Salix brachista HOM05D004048 ORTHO05D004859 3.3e-104 382.5 370 57.0
Sp4g28180 Schrenkiella parvula HOM05D004048 ORTHO05D004859 4.3e-104 382.1 374 56.4
TAR375G1056 Trochodendron aralioides HOM05D004048 ORTHO05D004859 4.3e-104 382.1 361 58.4
BcaC07g40651 Brassica carinata HOM05D004048 ORTHO05D004859 5.7e-104 381.7 368 57.6
BolC8t51222H Brassica oleracea HOM05D004048 ORTHO05D004859 5.7e-104 381.7 368 57.6
Hma1.2p1_0335F.1_g128890 Hydrangea macrophylla HOM05D004048 ORTHO05D004859 5.7e-104 381.7 368 56.2
Glyma.07G064600 Glycine max HOM05D004048 ORTHO05D004859 7.4e-104 381.3 369 57.7
C08p36390 Brassica napus HOM05D004048 ORTHO05D004859 1.3e-103 380.6 368 57.6
Migut.B01799 Erythranthe guttata HOM05D004048 ORTHO05D004859 1.3e-103 380.6 369 57.5
CAN.G439.29 Capsicum annuum HOM05D004048 ORTHO05D004859 2.1e-103 379.8 367 56.9
BraA09t40782Z Brassica rapa HOM05D004048 ORTHO05D004859 2.8e-103 379.4 368 57.9
Nitab4.5_0000615g0020 Nicotiana tabacum HOM05D004048 ORTHO05D004859 2.8e-103 379.4 369 56.9
BcaC07g40671 Brassica carinata HOM05D004048 ORTHO05D004859 3.7e-103 379.0 375 56.5
Gohir.D08G043100 Gossypium hirsutum HOM05D004048 ORTHO05D004859 4.8e-103 378.6 362 57.7
Lsat_1_v5_gn_4_35260 Lactuca sativa HOM05D004048 ORTHO05D004859 4.8e-103 378.6 361 58.7
Sc01g0003210 Simmondsia chinensis HOM05D004048 ORTHO05D004859 4.8e-103 378.6 367 56.4
MBI03_g34597_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 6.3e-103 378.3 373 57.1
Gohir.A08G032200 Gossypium hirsutum HOM05D004048 ORTHO05D004859 8.2e-103 377.9 367 56.9
Aqoxy5G04084 Aquilegia oxysepala HOM05D004048 ORTHO05D004859 1.1e-102 377.5 367 56.7
Gorai.004G041700 Gossypium raimondii HOM05D004048 ORTHO05D004859 1.1e-102 377.5 362 57.7
Gohir.D08G154300 Gossypium hirsutum HOM05D004048 ORTHO05D004859 1.8e-102 376.7 367 56.1
Gorai.004G160400 Gossypium raimondii HOM05D004048 ORTHO05D004859 1.8e-102 376.7 367 56.1
CiPaw.02G034800 Carya illinoinensis HOM05D004048 ORTHO05D004859 4.1e-102 375.6 379 55.1
Peaxi162Scf00217g00711 Petunia axillaris HOM05D004048 ORTHO05D004859 4.1e-102 375.6 367 56.4
arahy.Tifrunner.gnm1.ann1.9CR96V Arachis hypogaea HOM05D004048 ORTHO05D004859 5.3e-102 375.2 368 56.8
Carub.0005s2822 Capsella rubella HOM05D004048 ORTHO05D004859 1.2e-101 374.0 366 57.1
CsaV3_7G025860 Cucumis sativus L. HOM05D004048 ORTHO05D004859 1.2e-101 374.0 363 57.0
PGSC0003DMG400002011 Solanum tuberosum HOM05D004048 ORTHO05D004859 2.0e-101 373.2 367 56.1
arahy.Tifrunner.gnm1.ann1.8BBS1S Arachis hypogaea HOM05D004048 ORTHO05D004859 2.6e-101 372.9 368 56.5
Rhsim07G0010400 Rhododendron simsii HOM05D004048 ORTHO05D004859 2.6e-101 372.9 349 59.6
Solyc09g007130.3 Solanum lycopersicum HOM05D004048 ORTHO05D004859 3.4e-101 372.5 363 56.2
SGA_v2.0_scaffold4G02279 Striga asiatica HOM05D004048 ORTHO05D004859 3.4e-101 372.5 364 56.6
arahy.Tifrunner.gnm1.ann1.8G3C0P Arachis hypogaea HOM05D004048 ORTHO05D004859 7.6e-101 371.3 379 54.9
CANSAT56G4107 Cannabis sativa HOM05D004048 ORTHO05D004859 7.6e-101 371.3 367 56.9
Lj1g0027864 Lotus japonicus HOM05D004048 ORTHO05D004859 1.3e-100 370.5 369 56.1
Ca_03490_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 1.7e-100 370.2 365 57.3
VMungo0331G0386 Vigna mungo HOM05D004048 ORTHO05D004859 2.2e-100 369.8 372 55.4
Lj5g0009706 Lotus japonicus HOM05D004048 ORTHO05D004859 3.8e-100 369.0 369 56.4
TPR.G37181 Trifolium pratense HOM05D004048 ORTHO05D004859 5.0e-100 368.6 371 56.9
MELO3C012767.2 Cucumis melo HOM05D004048 ORTHO05D004859 8.4e-100 367.9 394 53.6
Lalb_Chr17g0338041 Lupinus albus HOM05D004048 ORTHO05D004859 8.4e-100 367.9 369 56.1
Duzib138G1147 Durio zibethinus HOM05D004048 ORTHO05D004859 4.2e-99 365.5 396 51.8
Medtr8g028555 Medicago truncatula HOM05D004048 ORTHO05D004859 1.2e-98 364.0 367 56.1
TPR.G28287 Trifolium pratense HOM05D004048 ORTHO05D004859 1.2e-98 364.0 371 55.8
Nitab4.5_0005222g0030 Nicotiana tabacum HOM05D004048 ORTHO05D004859 6.1e-98 361.7 363 55.9
FAN06G4041 Fragaria x ananassa HOM05D004048 ORTHO05D004859 7.9e-98 361.3 293 70.0
Psat4g156920 Pisum sativum HOM05D004048 ORTHO05D004859 1.3e-97 360.5 371 55.8
MELO3C014805.2 Cucumis melo HOM05D004048 ORTHO05D004859 3.0e-97 359.4 361 54.8
HPP92_005267 Vanilla planifolia HOM05D004048 ORTHO05D004859 1.5e-96 357.1 361 54.6
Oeu054354.2 Olea europaea HOM05D004048 ORTHO05D004859 1.3e-95 354.0 407 50.9
AUR62022619 Chenopodium quinoa HOM05D004048 ORTHO05D004859 1.6e-95 353.6 339 57.8
Nn6g32447 Nelumbo nucifera HOM05D004048 ORTHO05D004859 1.6e-95 353.6 317 60.6
Sopen09g002000 Solanum pennellii HOM05D004048 ORTHO05D004859 5.3e-94 348.6 334 56.9
SEGI_12250 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 4.5e-93 345.5 367 51.8
Ah.05g180160 Amaranthus hybridus HOM05D004048 ORTHO05D004859 6.5e-92 341.7 354 54.8
CARHR107270 Cardamine hirsuta HOM05D004048 ORTHO05D004859 2.5e-88 329.7 371 52.8
Phvul.010G104900 Phaseolus vulgaris HOM05D004048 ORTHO05D004859 5.7e-88 328.6 325 56.9
unitig_60.g25627 Utricularia gibba HOM05D004048 ORTHO05D004859 7.4e-88 328.2 361 53.2
Mapoly0035s0043 Marchantia polymorpha HOM05D004048 ORTHO05D004859 1.3e-84 317.4 369 49.3
ECA234G0147 Erigeron canadensis HOM05D004048 ORTHO05D004859 1.2e-82 310.8 302 58.9
AagrBONN_evm.TU.Sc2ySwM_117.2358 Anthoceros agrestis HOM05D004048 ORTHO05D004859 7.9e-82 308.1 355 49.6
AagrBONN_evm.TU.Sc2ySwM_117.1042 Anthoceros agrestis HOM05D004048 ORTHO05D004859 1.8e-81 307.0 355 49.3
Glyma.09G254700 Glycine max HOM05D004048 ORTHO05D004859 1.8e-81 307.0 347 51.6
SMO144G0210 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 1.8e-81 307.0 356 48.0
MCO13G154 Micromonas commoda HOM05D004048 ORTHO05D004859 5.7e-80 302.0 358 49.2
Pp3c7_220 Physcomitrium patens HOM05D004048 ORTHO05D004859 7.4e-80 301.6 366 47.8
GSVIVG01026967001 Vitis vinifera HOM05D004048 ORTHO05D004859 1.7e-79 300.4 300 56.3
FAN10G1509 Fragaria x ananassa HOM05D004048 ORTHO05D004859 7.7e-77 291.6 286 61.9
CBR_g45417 Chara braunii HOM05D004048 ORTHO05D004859 2.9e-76 289.7 339 48.7
Cre12.g508550 Chlamydomonas reinhardtii HOM05D004048 ORTHO05D004859 1.1e-75 287.7 360 45.6
Os01g0225500 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 1.9e-75 287.0 348 46.6
Gohir.A08G133000 Gossypium hirsutum HOM05D004048 ORTHO05D004859 3.3e-72 276.2 299 51.8
Eucgr.B01984 Eucalyptus grandis HOM05D004048 ORTHO05D004859 1.7e-68 263.8 378 43.4
Zm00001eb339000 Zea mays HOM05D004048 ORTHO05D004859 4.7e-66 255.8 219 64.8
ATR0751G082 Amborella trichopoda HOM05D004048 ORTHO05D004859 8.0e-66 255.0 231 60.2
SMO356G0035 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 1.8e-65 253.8 346 43.9
CDE11G0110 Ceratophyllum demersum HOM05D004048 ORTHO05D004859 2.3e-65 253.4 288 50.3
Medtr4g037305 Medicago truncatula HOM05D004048 ORTHO05D004859 4.0e-65 252.7 286 51.7
SEGI_21771 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 1.5e-64 250.8 232 60.8
SMO119G0299 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 9.8e-64 248.1 312 45.8
BcaC07g42671 Brassica carinata HOM05D004048 ORTHO05D004859 1.1e-62 244.6 368 42.7
ATR0751G137 Amborella trichopoda HOM05D004048 ORTHO05D004859 1.0e-60 238.0 223 58.3
PRCOL_00005166 Prasinoderma coloniale HOM05D004048 ORTHO05D004859 2.9e-60 236.5 366 40.7
AL4G45340 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 1.2e-50 204.5 200 56.0
Cfa003872 Carpinus fangiana HOM05D004048 ORTHO05D004859 2.9e-47 193.4 329 41.9
Eucgr.B01986 Eucalyptus grandis HOM05D004048 ORTHO05D004859 1.9e-43 180.6 312 39.1
Medtr4g037245 Medicago truncatula HOM05D004048 ORTHO05D004859 1.4e-41 174.5 164 60.4
SHI16536 Sapria himalayana HOM05D004048 ORTHO05D004859 1.4e-41 174.5 117 74.4
arahy.Tifrunner.gnm1.ann1.CIF5FW Arachis hypogaea HOM05D004048 ORTHO05D004859 4.0e-41 172.9 179 52.0
FAN01G2460 Fragaria x ananassa HOM05D004048 ORTHO05D004859 8.6e-36 155.2 96 77.1
TPR.G28294 Trifolium pratense HOM05D004048 ORTHO05D004859 2.3e-33 147.1 216 44.9
Cfa001640 Carpinus fangiana HOM05D004048 ORTHO05D004859 6.8e-33 145.6 352 33.0
Medtr4g037315 Medicago truncatula HOM05D004048 ORTHO05D004859 2.2e-31 140.6 102 65.7
PGSC0003DMG400018716 Solanum tuberosum HOM05D004048 ORTHO05D004859 6.4e-31 139.0 87 72.4
SEGI_25526 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 1.1e-30 138.3 161 47.8
Lj6g0001313 Lotus japonicus HOM05D004048 ORTHO05D004859 3.2e-30 136.7 97 66.0
CAN.G439.28 Capsicum annuum HOM05D004048 ORTHO05D004859 4.1e-30 136.3 88 72.7
Os01g0225400 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 2.7e-29 133.7 90 68.9
MBI17_g16531_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 9.5e-27 125.2 140 50.0
Medtr4g037275 Medicago truncatula HOM05D004048 ORTHO05D004859 9.5e-27 125.2 78 79.5
FAN10G2371 Fragaria x ananassa HOM05D004048 ORTHO05D038698 1.6e-26 124.4 85 82.4
arahy.Tifrunner.gnm1.ann1.63JPLQ Arachis hypogaea HOM05D004048 ORTHO05D004859 2.1e-26 124.0 86 67.4
MBI12_g43904_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 2.1e-26 124.0 129 55.8
arahy.Tifrunner.gnm1.ann1.DMYH1R Arachis hypogaea HOM05D004048 ORTHO05D004859 2.5e-19 100.5 77 62.3
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 3.3e-19 100.1 193 38.3
Potri.002G164601 Populus trichocarpa HOM05D004048 ORTHO05D004859 7.3e-19 99.0 83 54.2
Ca_03489_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 1.6e-18 97.8 62 82.3
ATR0751G274 Amborella trichopoda HOM05D004048 ORTHO05D004859 1.8e-17 94.4 73 57.5
SGA_v2.0_scaffold4G02383 Striga asiatica HOM05D004048 ORTHO05D051375 6.9e-17 92.4 54 90.7
Haze_27487 Corylus avellana HOM05D004048 ORTHO05D004859 8.9e-17 92.0 271 24.4
HanXRQChr15g0474641 Helianthus annuus HOM05D004048 ORTHO05D004859 8.9e-17 92.0 62 77.4
AL4G45350 Arabidopsis lyrata HOM05D004048 ORTHO05D038698 2.2e-15 87.4 63 68.3
Actinidia20163 Actinidia chinensis HOM05D004048 ORTHO05D004859 9.9e-08 62.0 66 54.5


User provided reference genes

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