Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G1477 Fragaria x ananassa HOM05D000131 ORTHO05D046679 8.7e-57 223.4 112 100.0
FvH4_7g20920 Fragaria vesca HOM05D000131 ORTHO05D003474 1.1e-38 163.3 84 95.2
FAN10G3331 Fragaria x ananassa HOM05D000131 ORTHO05D003474 1.4e-35 152.9 84 90.5
FAN10G4257 Fragaria x ananassa HOM05D000131 ORTHO05D003474 1.4e-35 152.9 84 90.5
FAN03G1026 Fragaria x ananassa HOM05D000131 ORTHO05D003474 1.2e-16 90.1 44 95.5
RcHm_v2.0_Chr1g0365291 Rosa chinensis HOM05D000131 ORTHO05D003474 1.4e-14 83.2 44 86.4
Nitab4.5_0000426g0170 Nicotiana tabacum HOM05D000131 ORTHO05D003474 1.6e-13 79.7 69 58.0
Solyc04g010230.4 Solanum lycopersicum HOM05D000131 ORTHO05D003474 7.7e-13 77.4 44 81.8
Sopen04g005420 Solanum pennellii HOM05D000131 ORTHO05D003474 7.7e-13 77.4 44 81.8
Actinidia13849 Actinidia chinensis HOM05D000131 ORTHO05D003474 2.2e-12 75.9 44 75.0
PGSC0003DMG400030180 Solanum tuberosum HOM05D000131 ORTHO05D003474 2.2e-12 75.9 44 79.5
Oeu050646.1 Olea europaea HOM05D000131 ORTHO05D003474 2.9e-12 75.5 44 72.7
Nitab4.5_0008987g0030 Nicotiana tabacum HOM05D000131 ORTHO05D003474 5.0e-12 74.7 44 77.3
Peaxi162Scf00060g00620 Petunia axillaris HOM05D000131 ORTHO05D003474 5.0e-12 74.7 43 79.1
Manes.07G107700 Manihot esculenta HOM05D000131 ORTHO05D003474 6.5e-12 74.3 44 75.0
PGR004G0894 Punica granatum HOM05D000131 ORTHO05D003474 6.5e-12 74.3 44 72.7
GSVIVG01005974001 Vitis vinifera HOM05D000131 ORTHO05D003474 6.5e-12 74.3 44 72.7
Potri.008G048600 Populus trichocarpa HOM05D000131 ORTHO05D003474 1.1e-11 73.6 44 75.0
TAR636G2837 Trochodendron aralioides HOM05D000131 ORTHO05D003474 1.5e-11 73.2 50 66.0
Cc00_g14000 Coffea canephora HOM05D000131 ORTHO05D003474 2.5e-11 72.4 44 70.5
Haze_20708 Corylus avellana HOM05D000131 ORTHO05D003474 3.2e-11 72.0 52 63.5
Glyma.20G240800 Glycine max HOM05D000131 ORTHO05D003474 3.2e-11 72.0 44 72.7
QL08p057761 Quercus lobata HOM05D000131 ORTHO05D003474 3.2e-11 72.0 44 72.7
Dinv25948 Davidia involucrata HOM05D000131 ORTHO05D003474 4.2e-11 71.6 57 59.6
Nn2g10528 Nelumbo nucifera HOM05D000131 ORTHO05D003474 4.2e-11 71.6 46 69.6
Duzib106G1594 Durio zibethinus HOM05D000131 ORTHO05D003474 5.5e-11 71.2 44 72.7
Haze_16981 Corylus avellana HOM05D000131 ORTHO05D003474 7.2e-11 70.9 46 67.4
Prupe.2G226100 Prunus persica HOM05D000131 ORTHO05D003474 7.2e-11 70.9 44 70.5
Sabra08G0034600 Salix brachista HOM05D000131 ORTHO05D003474 7.2e-11 70.9 44 70.5
Nn2g12851 Nelumbo nucifera HOM05D000131 ORTHO05D003474 9.4e-11 70.5 47 66.0
Aqoxy4G03069 Aquilegia oxysepala HOM05D000131 ORTHO05D003474 1.2e-10 70.1 50 60.0
Rhsim09G0156900 Rhododendron simsii HOM05D000072 ORTHO05D000026 1.2e-10 70.1 44 70.5
Rhsim09G0157600 Rhododendron simsii HOM05D000131 ORTHO05D003474 1.2e-10 70.1 44 70.5
GSVIVG01025593001 Vitis vinifera HOM05D000131 ORTHO05D003474 1.2e-10 70.1 44 70.5
BcaB02g08441 Brassica carinata HOM05D000131 ORTHO05D003474 1.6e-10 69.7 44 68.2
A04p04750 Brassica napus HOM05D000131 ORTHO05D003474 1.6e-10 69.7 44 68.2
BraA04t16187Z Brassica rapa HOM05D000131 ORTHO05D003474 1.6e-10 69.7 44 68.2
Eucgr.J01160 Eucalyptus grandis HOM05D000131 ORTHO05D003474 1.6e-10 69.7 44 68.2
Lj5g0017357 Lotus japonicus HOM05D000131 ORTHO05D003474 1.6e-10 69.7 41 78.0
C04p37260 Brassica napus HOM05D000131 ORTHO05D003474 2.1e-10 69.3 44 68.2
Ca_11308_v3 Cicer arietinum L. HOM05D000131 ORTHO05D003474 2.1e-10 69.3 41 75.6
TWI77G0191 Tripterygium wilfordii HOM05D000131 ORTHO05D003474 2.1e-10 69.3 79 46.8
DCAR_015236 Daucus carota HOM05D000131 ORTHO05D003474 2.7e-10 68.9 42 76.2
Duzib093G0897 Durio zibethinus HOM05D000131 ORTHO05D003474 2.7e-10 68.9 42 73.8
MD07G1188200 Malus domestica HOM05D000131 ORTHO05D003474 2.7e-10 68.9 44 70.5
QL07p046253 Quercus lobata HOM05D000131 ORTHO05D003474 2.7e-10 68.9 47 68.1
Atru.chr12.576 Acer truncatum HOM05D000131 ORTHO05D003474 3.6e-10 68.6 44 65.9
Carub.0005s2178 Capsella rubella HOM05D000131 ORTHO05D003474 3.6e-10 68.6 44 68.2
Aa31LG10G10010 Aethionema arabicum HOM05D000131 ORTHO05D003474 4.7e-10 68.2 44 68.2
AL5G36260 Arabidopsis lyrata HOM05D000131 ORTHO05D003474 4.7e-10 68.2 44 65.9
CARHR165170 Cardamine hirsuta HOM05D000131 ORTHO05D003474 4.7e-10 68.2 44 65.9
DCAR_017756 Daucus carota HOM05D000131 ORTHO05D003474 4.7e-10 68.2 44 70.5
HanXRQChr07g0200811 Helianthus annuus HOM05D000131 ORTHO05D003474 4.7e-10 68.2 43 69.8
Thecc.05G047400 Theobroma cacao HOM05D000131 ORTHO05D003474 4.7e-10 68.2 42 71.4
AT3G55140 Arabidopsis thaliana HOM05D000131 ORTHO05D003474 6.1e-10 67.8 44 65.9
Lsat_1_v5_gn_6_32921 Lactuca sativa HOM05D000739 ORTHO05D003474 6.1e-10 67.8 51 54.9
Lsat_1_v5_gn_6_32941 Lactuca sativa HOM05D000131 ORTHO05D003474 6.1e-10 67.8 51 54.9
Sp5g07280 Schrenkiella parvula HOM05D000131 ORTHO05D003474 6.1e-10 67.8 44 68.2
arahy.Tifrunner.gnm1.ann1.IL3471 Arachis hypogaea HOM05D000131 ORTHO05D003474 8.0e-10 67.4 54 64.8
BcaC02g09731 Brassica carinata HOM05D000131 ORTHO05D003474 8.0e-10 67.4 44 65.9
BolC4t25288H Brassica oleracea HOM05D000131 ORTHO05D003474 8.0e-10 67.4 44 65.9
Thhalv10010534m.g Eutrema salsugineum HOM05D000131 ORTHO05D003474 8.0e-10 67.4 44 65.9
Gohir.D10G218500 Gossypium hirsutum HOM05D000131 ORTHO05D003474 8.0e-10 67.4 44 65.9
Gorai.011G245200 Gossypium raimondii HOM05D000131 ORTHO05D003474 8.0e-10 67.4 44 65.9
Hma1.2p1_0793F.1_g218690 Hydrangea macrophylla HOM05D000131 ORTHO05D003474 8.0e-10 67.4 44 68.2
Hma1.2p1_2563F.1_g324470 Hydrangea macrophylla HOM05D000131 ORTHO05D003474 8.0e-10 67.4 44 68.2
MD01G1119400 Malus domestica HOM05D000131 ORTHO05D003474 8.0e-10 67.4 41 73.2
Phvul.007G009300 Phaseolus vulgaris HOM05D000131 ORTHO05D003474 8.0e-10 67.4 41 75.6
Thecc.10G059800 Theobroma cacao HOM05D000131 ORTHO05D003474 8.0e-10 67.4 44 65.9
arahy.Tifrunner.gnm1.ann1.Z1WCUM Arachis hypogaea HOM05D000131 ORTHO05D003474 1.0e-09 67.0 41 73.2
Dinv37223 Davidia involucrata HOM05D000131 ORTHO05D003474 1.0e-09 67.0 42 71.4
Lsat_1_v5_gn_2_115560 Lactuca sativa HOM05D000131 ORTHO05D003474 1.0e-09 67.0 43 69.8
Lj1A930T83 Lonicera japonica HOM05D000131 ORTHO05D003474 1.0e-09 67.0 44 65.9
Psat6g237720 Pisum sativum HOM05D000131 ORTHO05D003474 1.0e-09 67.0 40 72.5
Cfa001550 Carpinus fangiana HOM05D000131 ORTHO05D003474 1.4e-09 66.6 44 65.9
Lalb_Chr21g0307261 Lupinus albus HOM05D000131 ORTHO05D003474 1.4e-09 66.6 43 72.1
CSS0021674 Camellia sinensis var. sinensis HOM05D000131 ORTHO05D003474 1.8e-09 66.2 41 68.3
PSO339G6536 Papaver somniferum HOM05D000131 ORTHO05D003474 1.8e-09 66.2 51 60.8
PSO384G2292 Papaver somniferum HOM05D000131 ORTHO05D003474 1.8e-09 66.2 51 60.8
Cfa017452 Carpinus fangiana HOM05D000131 ORTHO05D003474 2.3e-09 65.9 47 61.7
CiPaw.02G179300 Carya illinoinensis HOM05D000131 ORTHO05D003474 2.3e-09 65.9 44 61.4
Eucgr.A01218 Eucalyptus grandis HOM05D000131 ORTHO05D003474 2.3e-09 65.9 44 65.9
Lj2A102G63 Lonicera japonica HOM05D000131 ORTHO05D003474 2.3e-09 65.9 40 72.5
SalBow4G0554 Salvia bowleyana HOM05D000131 ORTHO05D003474 2.3e-09 65.9 41 73.2
TWI38G1499 Tripterygium wilfordii HOM05D000131 ORTHO05D003474 2.3e-09 65.9 44 68.2
arahy.Tifrunner.gnm1.ann1.V6146H Arachis hypogaea HOM05D000131 ORTHO05D003474 3.0e-09 65.5 42 69.0
DCAR_014944 Daucus carota HOM05D000131 ORTHO05D003474 3.0e-09 65.5 50 64.0
Prupe.6G247100 Prunus persica HOM05D000131 ORTHO05D003474 3.0e-09 65.5 48 62.5
SGA_v2.0_scaffold94G28636 Striga asiatica HOM05D000131 ORTHO05D003474 3.0e-09 65.5 41 73.2
THA.LOC104810004 Tarenaya hassleriana HOM05D000131 ORTHO05D003474 3.0e-09 65.5 49 59.2
arahy.Tifrunner.gnm1.ann1.32QG6C Arachis hypogaea HOM05D000131 ORTHO05D003474 4.0e-09 65.1 44 65.9
CSS0002403 Camellia sinensis var. sinensis HOM05D000131 ORTHO05D003474 4.0e-09 65.1 53 58.5
CSS0004899 Camellia sinensis var. sinensis HOM05D000131 ORTHO05D003474 4.0e-09 65.1 53 58.5
Ciclev10011951m.g Citrus clementina HOM05D000131 ORTHO05D003474 4.0e-09 65.1 42 69.0
unitig_578.g16391 Utricularia gibba HOM05D000131 ORTHO05D003474 4.0e-09 65.1 50 60.0
Ciclev10032073m.g Citrus clementina HOM05D000131 ORTHO05D003474 5.2e-09 64.7 44 68.2
FvH4_6g14680 Fragaria vesca HOM05D000131 ORTHO05D003474 5.2e-09 64.7 42 69.0
FAN02G1348 Fragaria x ananassa HOM05D000131 ORTHO05D003474 5.2e-09 64.7 42 69.0
FAN09G0075 Fragaria x ananassa HOM05D000131 ORTHO05D003474 5.2e-09 64.7 42 69.0
Gohir.A10G210200 Gossypium hirsutum HOM05D000131 ORTHO05D003474 5.2e-09 64.7 44 61.4
HanXRQChr13g0399171 Helianthus annuus HOM05D000131 ORTHO05D003474 5.2e-09 64.7 44 61.4
MD12G1133200 Malus domestica HOM05D000131 ORTHO05D003474 5.2e-09 64.7 61 54.1
Sc20g0004360 Simmondsia chinensis HOM05D000131 ORTHO05D003474 5.2e-09 64.7 41 68.3
MSTRG.5699 Avicennia marina HOM05D000131 ORTHO05D003474 6.8e-09 64.3 41 70.7
COL.COLO4_07080 Corchorus olitorius HOM05D000131 ORTHO05D003474 6.8e-09 64.3 42 69.0
ECA238G4019 Erigeron canadensis HOM05D000131 ORTHO05D003474 6.8e-09 64.3 41 70.7
Lj3A974T66 Lonicera japonica HOM05D000131 ORTHO05D003474 6.8e-09 64.3 42 66.7
RcHm_v2.0_Chr3g0467861 Rosa chinensis HOM05D000131 ORTHO05D003474 6.8e-09 64.3 42 69.0
BolC9t59483H Brassica oleracea HOM05D001289 ORTHO05D033251 8.8e-09 63.9 41 68.3
FAN14G2307 Fragaria x ananassa HOM05D000131 ORTHO05D003474 8.8e-09 63.9 42 69.0
Potri.006G214400 Populus trichocarpa HOM05D000131 ORTHO05D003474 8.8e-09 63.9 40 72.5
Potri.016G080600 Populus trichocarpa HOM05D000131 ORTHO05D003474 8.8e-09 63.9 43 69.8
HPP92_001687 Vanilla planifolia HOM05D000131 ORTHO05D003474 8.8e-09 63.9 42 69.0
Glyma.10G046100 Glycine max HOM05D000131 ORTHO05D003474 1.2e-08 63.5 50 56.0
Gohir.A09G159400 Gossypium hirsutum HOM05D000131 ORTHO05D003474 1.2e-08 63.5 39 71.8
Gorai.006G176400 Gossypium raimondii HOM05D000131 ORTHO05D003474 1.2e-08 63.5 39 71.8
Oeu016496.1 Olea europaea HOM05D000131 ORTHO05D003474 1.2e-08 63.5 41 70.7
vmacro20105 Vaccinium macrocarpon HOM05D000131 ORTHO05D003474 1.2e-08 63.5 41 70.7
MSTRG.26745 Avicennia marina HOM05D000131 ORTHO05D003474 1.5e-08 63.2 42 66.7
EL10Ac7g17797 Beta vulgaris HOM05D000131 ORTHO05D003474 1.5e-08 63.2 55 50.9
ClCG04G008560 Citrullus lanatus HOM05D000131 ORTHO05D003474 1.5e-08 63.2 46 63.0
Cc06_g03170 Coffea canephora HOM05D000131 ORTHO05D003474 1.5e-08 63.2 41 70.7
CsaV3_4G024600 Cucumis sativus L. HOM05D000131 ORTHO05D003474 1.5e-08 63.2 46 65.2
Glyma.13G134200 Glycine max HOM05D000131 ORTHO05D003474 1.5e-08 63.2 50 56.0
Gohir.D09G155000 Gossypium hirsutum HOM05D000131 ORTHO05D003474 1.5e-08 63.2 39 71.8
Phvul.007G160100 Phaseolus vulgaris HOM05D000131 ORTHO05D003474 1.5e-08 63.2 46 58.7
SalBow3G4097 Salvia bowleyana HOM05D000131 ORTHO05D003474 1.5e-08 63.2 41 68.3
TPR.G14016 Trifolium pratense HOM05D000131 ORTHO05D003474 1.5e-08 63.2 40 70.0
VMungo0720G2557 Vigna mungo HOM05D000131 ORTHO05D003474 1.5e-08 63.2 46 58.7
Ca_25199_v3 Cicer arietinum L. HOM05D000131 ORTHO05D003474 2.0e-08 62.8 52 55.8
Manes.09G088700 Manihot esculenta HOM05D000131 ORTHO05D003474 2.0e-08 62.8 46 63.0
MBI14_g36714_MAGBIO Magnolia biondii HOM05D000131 ORTHO05D003474 2.6e-08 62.4 42 69.0
CANSAT80G1430 Cannabis sativa HOM05D000131 ORTHO05D003474 3.4e-08 62.0 40 70.0
MELO3C003093.2 Cucumis melo HOM05D000131 ORTHO05D003474 3.4e-08 62.0 46 63.0
CDE07G0276 Ceratophyllum demersum HOM05D000131 ORTHO05D003474 4.4e-08 61.6 41 68.3
Medtr1g115550 Medicago truncatula HOM05D000131 ORTHO05D003474 4.4e-08 61.6 40 65.0
Sed0017142 Sechium edule HOM05D000131 ORTHO05D003474 4.4e-08 61.6 43 67.4
THA.LOC104827001 Tarenaya hassleriana HOM05D000131 ORTHO05D003474 4.4e-08 61.6 40 65.0
C02p09780 Brassica napus HOM05D001289 ORTHO05D033251 5.7e-08 61.2 42 64.3
ECA233G4350 Erigeron canadensis HOM05D000131 ORTHO05D003474 5.7e-08 61.2 41 63.4
Ah.08g214060 Amaranthus hybridus HOM05D000131 ORTHO05D003474 7.5e-08 60.8 41 63.4
BcaC05g29682 Brassica carinata HOM05D000131 ORTHO05D003474 7.5e-08 60.8 44 65.9
A05p39500 Brassica napus HOM05D000131 ORTHO05D003474 7.5e-08 60.8 44 65.9
C05p58520 Brassica napus HOM05D000131 ORTHO05D003474 7.5e-08 60.8 44 65.9
BolC5t34503H Brassica oleracea HOM05D000131 ORTHO05D003474 7.5e-08 60.8 44 65.9
BraA05t22731Z Brassica rapa HOM05D000131 ORTHO05D003474 7.5e-08 60.8 44 65.9
Lj5g0020817 Lotus japonicus HOM05D000131 ORTHO05D003474 7.5e-08 60.8 50 54.0
MBI14_g36716_MAGBIO Magnolia biondii HOM05D000131 ORTHO05D003474 7.5e-08 60.8 46 60.9
Atru.chr8.2493 Acer truncatum HOM05D000131 ORTHO05D003474 9.8e-08 60.5 42 66.7
Medtr1g067450 Medicago truncatula HOM05D000131 ORTHO05D003474 9.8e-08 60.5 52 51.9
Psat0s952g0080 Pisum sativum HOM05D000131 ORTHO05D003474 9.8e-08 60.5 52 50.0
SEGI_39541 Sequoiadendron giganteum HOM05D000131 ORTHO05D003474 9.8e-08 60.5 39 64.1
AL3G20720 Arabidopsis lyrata HOM05D000131 ORTHO05D003474 1.3e-07 60.1 44 63.6
AT3G09540 Arabidopsis thaliana HOM05D000131 ORTHO05D003474 1.3e-07 60.1 44 63.6
BcaC05g29683 Brassica carinata HOM05D000131 ORTHO05D003474 1.3e-07 60.1 44 65.9
Hund09897 Selenicereus undatus HOM05D000131 ORTHO05D003474 1.3e-07 60.1 44 61.4
CAN.G1557.5 Capsicum annuum HOM05D000131 ORTHO05D003474 1.7e-07 59.7 50 60.0
CDE04G3223 Ceratophyllum demersum HOM05D000131 ORTHO05D003474 1.7e-07 59.7 55 52.7
AUR62031827 Chenopodium quinoa HOM05D000131 ORTHO05D003474 1.7e-07 59.7 42 59.5
Lalb_Chr21g0314481 Lupinus albus HOM05D000131 ORTHO05D003474 1.7e-07 59.7 45 62.2
Rhsim05G0185900 Rhododendron simsii HOM05D000131 ORTHO05D003474 1.7e-07 59.7 41 65.9
Sabra16G0088800 Salix brachista HOM05D000131 ORTHO05D003474 1.7e-07 59.7 81 44.4
SHI12636 Sapria himalayana HOM05D000131 ORTHO05D003474 1.7e-07 59.7 52 55.8
Zm00001eb148660 Zea mays HOM05D000131 ORTHO05D003474 1.7e-07 59.7 38 73.7
Migut.J00384 Erythranthe guttata HOM05D000131 ORTHO05D003474 2.2e-07 59.3 40 67.5
SGA_v2.0_scaffold126G33855 Striga asiatica HOM05D000131 ORTHO05D003474 2.2e-07 59.3 41 65.9
Os01g0546800 Oryza sativa ssp. japonica HOM05D000131 ORTHO05D003474 2.8e-07 58.9 38 68.4
Sp3g07890 Schrenkiella parvula HOM05D000131 ORTHO05D003474 2.8e-07 58.9 44 63.6
Lsat_1_v5_gn_1_54920 Lactuca sativa HOM05D000131 ORTHO05D003474 3.7e-07 58.5 42 61.9
DCAR_019158 Daucus carota HOM05D000131 ORTHO05D003474 4.8e-07 58.2 41 65.9
ATR0674G001 Amborella trichopoda HOM05D000131 ORTHO05D003474 6.3e-07 57.8 39 66.7
Carub.0003s0863 Capsella rubella HOM05D000131 ORTHO05D003474 6.3e-07 57.8 46 58.7
CARHR083950 Cardamine hirsuta HOM05D000131 ORTHO05D003474 6.3e-07 57.8 45 60.0
AUR62008881 Chenopodium quinoa HOM05D000131 ORTHO05D003474 6.3e-07 57.8 41 58.5
Actinidia19743 Actinidia chinensis HOM05D000131 ORTHO05D003474 8.3e-07 57.4 47 51.1
BcaB03g11595 Brassica carinata HOM05D000131 ORTHO05D003474 8.3e-07 57.4 44 61.4
Thhalv10020972m.g Eutrema salsugineum HOM05D000131 ORTHO05D003474 8.3e-07 57.4 43 62.8
Aa31LG3G1990 Aethionema arabicum HOM05D000131 ORTHO05D003474 1.1e-06 57.0 44 61.4
HanXRQChr02g0053071 Helianthus annuus HOM05D000131 ORTHO05D003474 1.8e-06 56.2 42 54.8
Mapoly0007s0157 Marchantia polymorpha HOM05D000131 ORTHO05D003474 3.1e-06 55.5 58 48.3
TPR.G9082 Trifolium pratense HOM05D000131 ORTHO05D003474 3.1e-06 55.5 41 58.5
MD04G1117600 Malus domestica HOM05D000131 ORTHO05D046679 5.4e-06 54.7 42 61.9
VMungo0720G0920 Vigna mungo HOM05D000131 ORTHO05D003474 5.4e-06 54.7 29 86.2
Migut.L01633 Erythranthe guttata HOM05D000131 ORTHO05D003474 7.0e-06 54.3 41 61.0
COL.COLO4_10901 Corchorus olitorius HOM05D000131 ORTHO05D003474 9.1e-06 53.9 32 71.9


User provided reference genes

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