Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G1043 Fragaria x ananassa HOM05D002338 ORTHO05D006102 7.0e-56 220.3 106 100.0
FvH4_6g24910 Fragaria vesca HOM05D002338 ORTHO05D006102 3.4e-34 148.3 89 84.3
FAN02G0479 Fragaria x ananassa HOM05D002338 ORTHO05D006102 3.4e-34 148.3 89 84.3
FAN14G3958 Fragaria x ananassa HOM05D002338 ORTHO05D006102 3.4e-34 148.3 89 84.3
FAN05G1035 Fragaria x ananassa HOM05D002338 ORTHO05D006102 7.5e-34 147.1 89 83.1
FAN05G5039 Fragaria x ananassa HOM05D002338 ORTHO05D006102 7.5e-34 147.1 89 83.1
RcHm_v2.0_Chr5g0010711 Rosa chinensis HOM05D002338 ORTHO05D006102 1.5e-29 132.9 89 75.3
FvH4_3g07850 Fragaria vesca HOM05D009570 ORTHO05D009451 2.0e-26 122.5 87 72.4
FAN16G2383 Fragaria x ananassa HOM05D002338 ORTHO05D006102 3.0e-22 108.6 68 80.9
FAN25G0986 Fragaria x ananassa HOM05D002338 ORTHO05D006102 6.2e-20 100.9 57 93.0
Prupe.4G060500 Prunus persica HOM05D002338 ORTHO05D006102 5.8e-18 94.4 89 48.3
Cc02_g14860 Coffea canephora HOM05D002338 ORTHO05D006102 7.5e-18 94.0 91 47.3
Ah.09g233540 Amaranthus hybridus HOM05D002338 ORTHO05D006102 1.4e-16 89.7 87 46.0
FAN10G3983 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.4e-16 89.7 49 89.8
AUR62036936 Chenopodium quinoa HOM05D002338 ORTHO05D006102 3.2e-16 88.6 87 46.0
AUR62031197 Chenopodium quinoa HOM05D002338 ORTHO05D006102 4.1e-16 88.2 87 46.0
AUR62027671 Chenopodium quinoa HOM05D002338 ORTHO05D006102 5.4e-16 87.8 87 46.0
QL05p046957 Quercus lobata HOM05D002338 ORTHO05D006102 5.4e-16 87.8 89 47.2
Sc05g0007130 Simmondsia chinensis HOM05D002338 ORTHO05D006102 5.4e-16 87.8 91 45.1
MSTRG.7403 Avicennia marina HOM05D002338 ORTHO05D006102 7.1e-16 87.4 91 42.9
Dinv32217 Davidia involucrata HOM05D002338 ORTHO05D006102 7.1e-16 87.4 89 46.1
Peaxi162Scf00753g00411 Petunia axillaris HOM05D002338 ORTHO05D006102 7.1e-16 87.4 91 41.8
Manes.06G033800 Manihot esculenta HOM05D002338 ORTHO05D006102 1.2e-15 86.7 89 47.2
Oeu030709.1 Olea europaea HOM05D002338 ORTHO05D006102 1.2e-15 86.7 89 42.7
Lj1P636T28 Lonicera japonica HOM05D002338 ORTHO05D006102 2.1e-15 85.9 89 44.9
GSVIVG01026940001 Vitis vinifera HOM05D002338 ORTHO05D006102 2.1e-15 85.9 89 46.1
MD05G1301900 Malus domestica HOM05D002338 ORTHO05D006102 2.7e-15 85.5 86 46.5
GSVIVG01021206001 Vitis vinifera HOM05D002338 ORTHO05D006102 2.7e-15 85.5 89 44.9
EL10Ac8g20603 Beta vulgaris HOM05D002338 ORTHO05D006102 7.8e-15 84.0 87 43.7
CAN.G943.27 Capsicum annuum HOM05D002338 ORTHO05D006102 7.8e-15 84.0 96 44.8
ClCG03G007760 Citrullus lanatus HOM05D002338 ORTHO05D006102 7.8e-15 84.0 87 42.5
BcaNung03636 Brassica carinata HOM05D002338 ORTHO05D006102 1.3e-14 83.2 89 44.9
MELO3C002646.2 Cucumis melo HOM05D002338 ORTHO05D006102 1.3e-14 83.2 87 41.4
CsaV3_1G033380 Cucumis sativus L. HOM05D002338 ORTHO05D006102 1.7e-14 82.8 87 42.5
BraA01t00291Z Brassica rapa HOM05D002338 ORTHO05D006102 2.3e-14 82.4 89 44.9
Sopen03g002200 Solanum pennellii HOM05D002338 ORTHO05D006102 2.3e-14 82.4 96 42.7
PGR004G1505 Punica granatum HOM05D002338 ORTHO05D006102 3.9e-14 81.6 89 44.9
A01p03070 Brassica napus HOM05D002338 ORTHO05D006102 5.1e-14 81.3 89 44.9
Hma1.2p1_0987F.1_g244570 Hydrangea macrophylla HOM05D002338 ORTHO05D006102 5.1e-14 81.3 87 43.7
BcaNung00583 Brassica carinata HOM05D002338 ORTHO05D006102 6.6e-14 80.9 89 43.8
C01p03420 Brassica napus HOM05D002338 ORTHO05D006102 6.6e-14 80.9 89 43.8
BolC1t00329H Brassica oleracea HOM05D002338 ORTHO05D006102 6.6e-14 80.9 89 43.8
DCAR_005225 Daucus carota HOM05D002338 ORTHO05D006102 6.6e-14 80.9 89 43.8
PGSC0003DMG400004381 Solanum tuberosum HOM05D002338 ORTHO05D006102 6.6e-14 80.9 96 42.7
Rhsim13G0190300 Rhododendron simsii HOM05D002338 ORTHO05D006102 1.1e-13 80.1 88 38.6
SalBow4G0953 Salvia bowleyana HOM05D002338 ORTHO05D006102 1.1e-13 80.1 89 39.3
Migut.H00865 Erythranthe guttata HOM05D002338 ORTHO05D006102 2.5e-13 79.0 91 41.8
Sed0024643 Sechium edule HOM05D002338 ORTHO05D006102 2.5e-13 79.0 89 39.3
AT4G35540 Arabidopsis thaliana HOM05D002338 ORTHO05D006102 3.3e-13 78.6 89 43.8
Rhsim09G0087800 Rhododendron simsii HOM05D002338 ORTHO05D006102 3.3e-13 78.6 88 38.6
DCAR_030917 Daucus carota HOM05D002338 ORTHO05D006102 4.3e-13 78.2 84 45.2
Glyma.01G042900 Glycine max HOM05D002338 ORTHO05D006102 9.5e-13 77.0 89 46.1
Sp7g33320 Schrenkiella parvula HOM05D002338 ORTHO05D006102 9.5e-13 77.0 96 42.7
Ciclev10031207m.g Citrus clementina HOM05D002338 ORTHO05D006102 1.2e-12 76.6 87 44.8
arahy.Tifrunner.gnm1.ann1.2YH6BX Arachis hypogaea HOM05D002338 ORTHO05D006706 1.6e-12 76.3 89 46.1
BcaNung03635 Brassica carinata HOM05D002338 ORTHO05D006102 1.6e-12 76.3 89 43.8
CSS0032914 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 2.8e-12 75.5 86 39.5
Haze_06238 Corylus avellana HOM05D002338 ORTHO05D006102 2.8e-12 75.5 87 43.7
Lj6g0008317 Lotus japonicus HOM05D002338 ORTHO05D006102 2.8e-12 75.5 87 42.5
BcaB03g12416 Brassica carinata HOM05D002338 ORTHO05D006102 3.6e-12 75.1 96 40.6
THA.LOC104826474 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 3.6e-12 75.1 87 46.0
Lalb_Chr18g0054471 Lupinus albus HOM05D002338 ORTHO05D006102 4.7e-12 74.7 96 41.7
THA.LOC104827541 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 4.7e-12 74.7 87 44.8
CSS0007657 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 6.2e-12 74.3 86 40.7
Phvul.002G066000 Phaseolus vulgaris HOM05D002338 ORTHO05D006102 6.2e-12 74.3 89 42.7
Atru.chr2.3891 Acer truncatum HOM05D002338 ORTHO05D006102 1.1e-11 73.6 87 44.8
CARHR243880 Cardamine hirsuta HOM05D002338 ORTHO05D006102 1.1e-11 73.6 96 41.7
Aa31LG6G12510 Aethionema arabicum HOM05D002338 ORTHO05D006102 1.4e-11 73.2 96 41.7
SGA_v2.0_scaffold1G00039 Striga asiatica HOM05D002338 ORTHO05D006102 1.4e-11 73.2 89 38.2
Cfa000603 Carpinus fangiana HOM05D002338 ORTHO05D006102 1.8e-11 72.8 89 38.2
Ca_00873_v3 Cicer arietinum L. HOM05D002338 ORTHO05D006102 1.8e-11 72.8 89 42.7
Nn1g04395 Nelumbo nucifera HOM05D002338 ORTHO05D006102 1.8e-11 72.8 93 39.8
Atru.chr10.1675 Acer truncatum HOM05D002338 ORTHO05D006102 2.3e-11 72.4 89 44.9
Potri.004G084700 Populus trichocarpa HOM05D002338 ORTHO05D006102 3.1e-11 72.0 85 43.5
VMungo1215G0129 Vigna mungo HOM05D002338 ORTHO05D006102 6.8e-11 70.9 89 42.7
Sabra04G0094200 Salix brachista HOM05D002338 ORTHO05D006102 1.5e-10 69.7 85 43.5
Thhalv10027569m.g Eutrema salsugineum HOM05D002338 ORTHO05D006102 2.0e-10 69.3 86 43.0
Sabra04G0055900 Salix brachista HOM05D002338 ORTHO05D006102 2.0e-10 69.3 85 43.5
unitig_736.g22955 Utricularia gibba HOM05D002338 ORTHO05D006102 2.0e-10 69.3 89 36.0
Cpa.g.sc7.51 Carica papaya HOM05D002338 ORTHO05D006102 3.4e-10 68.6 87 42.5
Lsat_1_v5_gn_4_49520 Lactuca sativa HOM05D002338 ORTHO05D006102 3.4e-10 68.6 87 43.7
TAR627G0524 Trochodendron aralioides HOM05D002338 ORTHO05D006102 3.4e-10 68.6 89 39.3
TAR698G0001 Trochodendron aralioides HOM05D002338 ORTHO05D006102 3.4e-10 68.6 89 39.3
SHI24483 Sapria himalayana HOM05D002338 ORTHO05D006102 5.8e-10 67.8 84 41.7
Gohir.A11G156900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 7.6e-10 67.4 89 41.6
Duzib138G0048 Durio zibethinus HOM05D002338 ORTHO05D006102 9.9e-10 67.0 89 40.4
HanXRQChr16g0518871 Helianthus annuus HOM05D002338 ORTHO05D006102 1.7e-09 66.2 87 42.5
CSS0015305 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 3.8e-09 65.1 86 36.0
COL.COLO4_08893 Corchorus olitorius HOM05D002338 ORTHO05D006102 3.8e-09 65.1 97 39.2
Gorai.007G174700 Gossypium raimondii HOM05D002338 ORTHO05D006102 4.9e-09 64.7 89 40.4
HanXRQChr16g0517751 Helianthus annuus HOM05D002338 ORTHO05D006102 6.4e-09 64.3 87 41.4
HanXRQChr16g0520661 Helianthus annuus HOM05D002338 ORTHO05D006102 1.1e-08 63.5 87 41.4
AL7G15620 Arabidopsis lyrata HOM05D002338 ORTHO05D006102 1.9e-08 62.8 89 39.3
Gohir.D11G163900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 1.9e-08 62.8 89 40.4
ECA247G1464 Erigeron canadensis HOM05D002338 ORTHO05D006102 1.6e-07 59.7 96 37.5
Aqoxy1G02082 Aquilegia oxysepala HOM05D002338 ORTHO05D006102 2.1e-07 59.3 85 37.6
Migut.M01042 Erythranthe guttata HOM05D002338 ORTHO05D006102 4.6e-07 58.2 86 36.0
CDE02G4213 Ceratophyllum demersum HOM05D002338 ORTHO05D006102 3.9e-06 55.1 110 32.7


User provided reference genes

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