Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G0652 Fragaria x ananassa HOM05D005908 ORTHO05D007235 6.9e-159 563.9 284 100.0
FvH4_7g15530 Fragaria vesca HOM05D005908 ORTHO05D007235 2.6e-158 562.0 284 99.3
FAN06G2086 Fragaria x ananassa HOM05D005908 ORTHO05D007235 2.6e-158 562.0 284 99.3
FAN10G2728 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.3e-154 549.7 284 96.8
FAN10G3232 Fragaria x ananassa HOM05D005908 ORTHO05D007235 9.6e-153 543.5 284 95.8
FAN01G2408 Fragaria x ananassa HOM05D005908 ORTHO05D007235 1.5e-145 519.6 269 96.3
FAN03G0397 Fragaria x ananassa HOM05D005908 ORTHO05D007235 2.6e-142 508.8 269 95.2
RcHm_v2.0_Chr1g0376741 Rosa chinensis HOM05D005908 ORTHO05D007235 4.6e-139 498.0 284 87.3
MD13G1243600 Malus domestica HOM05D005908 ORTHO05D007235 4.0e-114 415.2 288 73.3
TAR375G0795 Trochodendron aralioides HOM05D005908 ORTHO05D007235 5.9e-102 374.8 290 66.2
Prupe.1G077000 Prunus persica HOM05D005908 ORTHO05D007235 1.0e-101 374.0 289 67.5
QL09p014976 Quercus lobata HOM05D005908 ORTHO05D007235 1.1e-100 370.5 290 65.9
Dinv35179 Davidia involucrata HOM05D005908 ORTHO05D007235 1.9e-100 369.8 263 69.6
CANSAT21G0323 Cannabis sativa HOM05D005908 ORTHO05D007235 3.6e-99 365.5 280 67.5
Lj1A993G71 Lonicera japonica HOM05D005908 ORTHO05D007235 8.0e-99 364.4 281 67.3
Atru.chr1.515 Acer truncatum HOM05D005908 ORTHO05D007235 1.8e-98 363.2 271 66.8
CANSAT21G0021 Cannabis sativa HOM05D005908 ORTHO05D007235 6.8e-98 361.3 280 66.8
Actinidia32893 Actinidia chinensis HOM05D005908 ORTHO05D007235 1.7e-96 356.7 291 63.6
Manes.06G144000 Manihot esculenta HOM05D005908 ORTHO05D007235 4.9e-96 355.1 279 64.9
CiPaw.04G067300 Carya illinoinensis HOM05D005908 ORTHO05D007235 6.4e-96 354.8 279 65.9
ClCG05G007830 Citrullus lanatus HOM05D005908 ORTHO05D007235 7.0e-95 351.3 274 65.7
CsaV3_3G016830 Cucumis sativus L. HOM05D005908 ORTHO05D007235 9.2e-95 350.9 274 64.6
Potri.015G138400 Populus trichocarpa HOM05D005908 ORTHO05D007235 9.2e-95 350.9 280 63.2
GSVIVG01010617001 Vitis vinifera HOM05D005908 ORTHO05D007235 1.2e-94 350.5 279 63.8
Gohir.D09G040800 Gossypium hirsutum HOM05D005908 ORTHO05D007235 4.6e-94 348.6 272 64.0
Gorai.006G046700 Gossypium raimondii HOM05D005908 ORTHO05D007235 4.6e-94 348.6 274 63.5
COL.COLO4_14265 Corchorus olitorius HOM05D005908 ORTHO05D007235 1.3e-93 347.1 283 61.1
Sabra15G0149500 Salix brachista HOM05D005908 ORTHO05D007235 1.3e-93 347.1 279 62.0
Sed0015226 Sechium edule HOM05D005908 ORTHO05D007235 1.3e-93 347.1 281 63.7
Thecc.03G170900 Theobroma cacao HOM05D005908 ORTHO05D007235 1.3e-93 347.1 272 65.1
TWI23G0151 Tripterygium wilfordii HOM05D005908 ORTHO05D007235 2.3e-93 346.3 278 62.9
Hma1.2p1_0270F.1_g108430 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 5.0e-93 345.1 248 65.7
Ciclev10005584m.g Citrus clementina HOM05D005908 ORTHO05D007235 4.3e-92 342.0 279 62.0
Nn6g34248 Nelumbo nucifera HOM05D005908 ORTHO05D007235 5.6e-92 341.7 261 64.8
Aqoxy7G00441 Aquilegia oxysepala HOM05D005908 ORTHO05D007235 9.5e-92 340.9 265 65.7
TWI39G0968 Tripterygium wilfordii HOM05D005908 ORTHO05D007235 3.6e-91 339.0 272 62.5
Cfa008281 Carpinus fangiana HOM05D005908 ORTHO05D007235 4.7e-91 338.6 226 72.6
vmacro08977 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 4.7e-91 338.6 279 60.9
Cpa.g.sc107.9 Carica papaya HOM05D005908 ORTHO05D007235 1.7e-88 330.1 277 63.2
Eucgr.K00226 Eucalyptus grandis HOM05D005908 ORTHO05D007235 1.4e-87 327.0 269 62.1
CAN.G548.2 Capsicum annuum HOM05D005908 ORTHO05D007235 1.2e-86 323.9 298 58.1
PSO782G1770 Papaver somniferum HOM05D005908 ORTHO05D007235 7.8e-86 321.2 287 58.2
Rhsim04G0117700 Rhododendron simsii HOM05D005908 ORTHO05D007235 1.7e-85 320.1 332 52.4
DCAR_009351 Daucus carota HOM05D005908 ORTHO05D007235 2.3e-85 319.7 283 58.3
Oeu030124.1 Olea europaea HOM05D005908 ORTHO05D007235 1.9e-84 316.6 278 59.4
PGSC0003DMG402014313 Solanum tuberosum HOM05D005908 ORTHO05D007235 4.3e-84 315.5 271 59.0
PSO478G3277 Papaver somniferum HOM05D005908 ORTHO05D007235 7.3e-84 314.7 286 57.3
Solyc03g026200.4 Solanum lycopersicum HOM05D005908 ORTHO05D007235 9.5e-84 314.3 263 59.7
vmacro06719 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 9.5e-84 314.3 271 58.7
Sopen03g005070 Solanum pennellii HOM05D005908 ORTHO05D007235 1.6e-83 313.5 263 59.7
Cc10_g10330 Coffea canephora HOM05D005908 ORTHO05D007235 2.8e-83 312.8 277 58.5
MSTRG.8762 Avicennia marina HOM05D005908 ORTHO05D007235 6.2e-83 311.6 276 55.8
MBI12_g29759_MAGBIO Magnolia biondii HOM05D005908 ORTHO05D007235 2.3e-82 309.7 279 56.3
Lalb_Chr01g0009141 Lupinus albus HOM05D005908 ORTHO05D007235 4.0e-82 308.9 266 59.0
Carub.0008s1219 Capsella rubella HOM05D005908 ORTHO05D007235 6.8e-82 308.1 260 59.2
BcaB01g04184 Brassica carinata HOM05D005908 ORTHO05D007235 8.9e-82 307.8 268 56.7
AT5G52110 Arabidopsis thaliana HOM05D005908 ORTHO05D007235 1.2e-81 307.4 260 58.8
CARHR265040 Cardamine hirsuta HOM05D005908 ORTHO05D007235 1.2e-81 307.4 249 61.0
VMungo0464G0636 Vigna mungo HOM05D005908 ORTHO05D007235 1.2e-81 307.4 276 56.9
Lsat_1_v5_gn_2_133120 Lactuca sativa HOM05D005908 ORTHO05D007235 1.5e-81 307.0 259 59.8
BcaC01g06164 Brassica carinata HOM05D005908 ORTHO05D007235 3.4e-81 305.8 283 55.8
C03p18500 Brassica napus HOM05D005908 ORTHO05D007235 3.4e-81 305.8 283 55.8
BolC3t14247H Brassica oleracea HOM05D005908 ORTHO05D007235 3.4e-81 305.8 283 55.8
Migut.F00374 Erythranthe guttata HOM05D005908 ORTHO05D007235 4.4e-81 305.4 291 56.7
Glyma.16G198400 Glycine max HOM05D005908 ORTHO05D007235 7.5e-81 304.7 239 61.9
SalBow1G0690 Salvia bowleyana HOM05D005908 ORTHO05D007235 7.5e-81 304.7 240 61.7
AL8G26480 Arabidopsis lyrata HOM05D005908 ORTHO05D007235 1.7e-80 303.5 258 58.1
HanXRQChr07g0206851 Helianthus annuus HOM05D005908 ORTHO05D007235 1.7e-80 303.5 287 55.4
SGA_v2.0_scaffold2G01076 Striga asiatica HOM05D005908 ORTHO05D007235 1.7e-80 303.5 293 55.3
BraA03t10874Z Brassica rapa HOM05D005908 ORTHO05D007235 2.2e-80 303.1 283 54.4
A03p15840 Brassica napus HOM05D005908 ORTHO05D007235 2.9e-80 302.8 283 54.4
Aa31LG3G8480 Aethionema arabicum HOM05D005908 ORTHO05D007235 6.4e-80 301.6 259 58.3
Thhalv10014339m.g Eutrema salsugineum HOM05D005908 ORTHO05D007235 6.4e-80 301.6 284 53.9
TPR.G5821 Trifolium pratense HOM05D005908 ORTHO05D007235 1.4e-79 300.4 256 57.8
ECA238G1518 Erigeron canadensis HOM05D005908 ORTHO05D007235 1.9e-79 300.1 246 60.2
Psat1g113160 Pisum sativum HOM05D005908 ORTHO05D007235 4.1e-79 298.9 239 61.5
THA.LOC104811995 Tarenaya hassleriana HOM05D005908 ORTHO05D007235 4.1e-79 298.9 279 55.2
Sp6g14360 Schrenkiella parvula HOM05D005908 ORTHO05D007235 7.1e-79 298.1 273 55.7
SpUn0060_0050 Schrenkiella parvula HOM05D005908 ORTHO05D007235 7.1e-79 298.1 273 55.7
Hma1.2p1_0270F.1_g108420 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 1.6e-78 297.0 291 54.0
AUR62016029 Chenopodium quinoa HOM05D005908 ORTHO05D007235 1.1e-76 290.8 261 55.6
Lj4g0016789 Lotus japonicus HOM05D005908 ORTHO05D007235 3.3e-76 289.3 266 55.3
Lj2g0007665 Lotus japonicus HOM05D005908 ORTHO05D007235 9.5e-76 287.7 266 55.3
Sc25g0000390 Simmondsia chinensis HOM05D005908 ORTHO05D007235 1.2e-75 287.3 264 53.8
arahy.Tifrunner.gnm1.ann1.580JC2 Arachis hypogaea HOM05D005908 ORTHO05D007235 8.1e-75 284.6 268 55.6
arahy.Tifrunner.gnm1.ann1.K8NCYF Arachis hypogaea HOM05D005908 ORTHO05D007235 1.1e-74 284.3 267 55.4
Lj2g0024281 Lotus japonicus HOM05D005908 ORTHO05D007235 1.1e-74 284.3 266 55.3
Ah.13g068320 Amaranthus hybridus HOM05D005908 ORTHO05D007235 6.8e-74 281.6 258 54.3
Gohir.A09G040000 Gossypium hirsutum HOM05D005908 ORTHO05D007235 1.5e-73 280.4 214 66.4
Haze_13753 Corylus avellana HOM05D005908 ORTHO05D007235 1.3e-72 277.3 216 67.6
Hund04705 Selenicereus undatus HOM05D005908 ORTHO05D007235 4.9e-72 275.4 263 53.2
Nitab4.5_0005024g0020 Nicotiana tabacum HOM05D005908 ORTHO05D007235 6.0e-70 268.5 294 53.7
CDE11G0458 Ceratophyllum demersum HOM05D003547 ORTHO05D004236 1.7e-69 266.9 233 54.1
Zm00001eb021390 Zea mays HOM05D005908 ORTHO05D007235 1.5e-68 263.8 283 49.8
ATR0757G107 Amborella trichopoda HOM05D005908 ORTHO05D007235 7.3e-68 261.5 231 56.3
Nitab4.5_0001083g0110 Nicotiana tabacum HOM05D005908 ORTHO05D007235 4.7e-67 258.8 281 52.3
AUR62021234 Chenopodium quinoa HOM05D005908 ORTHO05D007235 1.1e-66 257.7 217 58.1
HPP92_001363 Vanilla planifolia HOM05D005908 ORTHO05D007235 8.4e-64 248.1 237 52.7
Peaxi162Scf00915g00250 Petunia axillaris HOM05D005908 ORTHO05D007235 2.4e-63 246.5 312 48.4
Phvul.004G121600 Phaseolus vulgaris HOM05D005908 ORTHO05D007235 1.7e-61 240.4 201 60.7
MELO3C006877.2 Cucumis melo HOM05D005908 ORTHO05D007235 1.5e-60 237.3 276 49.6
EL10Ac3g05695 Beta vulgaris HOM05D005908 ORTHO05D007235 1.3e-59 234.2 382 37.4
FAN03G2347 Fragaria x ananassa HOM05D005908 ORTHO05D007235 2.4e-58 229.9 170 74.7
FAN03G3234 Fragaria x ananassa HOM05D005908 ORTHO05D007235 3.4e-57 226.1 167 73.7
vmacro06721 Vaccinium macrocarpon HOM05D005908 ORTHO05D007235 7.6e-57 224.9 237 51.9
SEGI_20513 Sequoiadendron giganteum HOM05D005908 ORTHO05D007235 2.2e-48 196.8 267 43.8
HPP92_001354 Vanilla planifolia HOM05D005908 ORTHO05D007235 6.7e-45 185.3 239 43.5
unitig_37.g11958 Utricularia gibba HOM05D005908 ORTHO05D007235 8.7e-45 184.9 188 47.9
Mapoly0051s0108 Marchantia polymorpha HOM05D005908 ORTHO05D007235 2.9e-40 169.9 237 41.4
AagrBONN_evm.TU.Sc2ySwM_228.723 Anthoceros agrestis HOM05D005908 ORTHO05D007235 9.0e-34 148.3 264 34.8
CSS0026196 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 5.9e-33 145.6 99 62.6
CSS0048064 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 5.9e-33 145.6 99 62.6
FAN01G0300 Fragaria x ananassa HOM05D005908 ORTHO05D007235 2.2e-32 143.7 105 72.4
Lsat_1_v5_gn_2_133160 Lactuca sativa HOM05D005908 ORTHO05D007235 2.9e-32 143.3 143 56.6
Pp3c13_15400 Physcomitrium patens HOM05D005908 ORTHO05D007235 5.0e-32 142.5 285 31.6
FvH4_7g29023 Fragaria vesca HOM05D005908 ORTHO05D007235 7.9e-30 135.2 205 43.9
Dinv28477 Davidia involucrata HOM05D005908 ORTHO05D007235 1.5e-28 131.0 94 73.4
Actinidia34081 Actinidia chinensis HOM05D005908 ORTHO05D007235 4.8e-27 125.9 146 48.6
SMO364G0827 Selaginella moellendorffii HOM05D005908 ORTHO05D007235 3.1e-26 123.2 233 36.1
CSS0007682 Camellia sinensis var. sinensis HOM05D005908 ORTHO05D007235 1.2e-25 121.3 106 64.2
SEGI_01877 Sequoiadendron giganteum HOM05D005908 ORTHO05D007235 1.4e-23 114.4 153 45.1
MD16G1250200 Malus domestica HOM05D005908 ORTHO05D007235 6.7e-21 105.5 76 69.7
MCO01G567 Micromonas commoda HOM05D005908 ORTHO05D007235 8.8e-21 105.1 247 31.6
SMO353G0077 Selaginella moellendorffii HOM05D005908 ORTHO05D007235 9.7e-20 101.7 263 32.3
CBR_g58789 Chara braunii HOM05D005908 ORTHO05D007235 8.2e-19 98.6 272 30.9
Cre12.g537850 Chlamydomonas reinhardtii HOM05D005908 ORTHO05D007235 2.4e-18 97.1 300 27.7
MELO3C031805.2 Cucumis melo HOM05D005908 ORTHO05D007235 1.9e-15 87.4 64 64.1
Os10g0522500 Oryza sativa ssp. japonica HOM05D005908 ORTHO05D007235 1.5e-12 77.8 49 77.6
Hma1.2p1_0010F.1_g006900 Hydrangea macrophylla HOM05D005908 ORTHO05D007235 1.3e-11 74.7 57 61.4
MD12G1162900 Malus domestica HOM05D000067 ORTHO05D000097 2.0e-09 67.4 42 73.8


User provided reference genes

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