Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G0090 Fragaria x ananassa HOM05D005759 ORTHO05D007172 7.2e-207 723.8 393 100.0
FvH4_7g06330 Fragaria vesca HOM05D005759 ORTHO05D007172 1.2e-196 689.9 393 96.7
FAN03G0647 Fragaria x ananassa HOM05D005759 ORTHO05D007172 9.8e-196 686.8 393 94.7
RcHm_v2.0_Chr1g0334181 Rosa chinensis HOM05D005759 ORTHO05D007172 1.8e-181 639.4 393 84.5
FAN10G2875 Fragaria x ananassa HOM05D005759 ORTHO05D007172 2.3e-168 595.9 340 90.3
MD07G1072000 Malus domestica HOM05D005759 ORTHO05D007172 2.1e-134 483.0 399 66.4
MD02G1244900 Malus domestica HOM05D005759 ORTHO05D007172 3.6e-134 482.3 399 66.2
CiPaw.13G035800 Carya illinoinensis HOM05D005759 ORTHO05D007172 3.6e-113 412.5 389 57.1
Cfa011218 Carpinus fangiana HOM05D005759 ORTHO05D007172 3.9e-112 409.1 399 56.9
Haze_02624 Corylus avellana HOM05D005759 ORTHO05D007172 9.7e-111 404.4 399 56.9
Dinv31290 Davidia involucrata HOM05D005759 ORTHO05D007172 3.8e-107 392.5 403 54.3
Thecc.10G099000 Theobroma cacao HOM05D005759 ORTHO05D007172 3.8e-107 392.5 405 54.1
Prupe.2G090100 Prunus persica HOM05D005759 ORTHO05D007172 4.2e-106 389.0 348 63.2
TAR623G0127 Trochodendron aralioides HOM05D005759 ORTHO05D007172 1.6e-105 387.1 392 56.4
MELO3C019880.2 Cucumis melo HOM05D005759 ORTHO05D007172 4.6e-105 385.6 392 55.9
Duzib114G0077 Durio zibethinus HOM05D005759 ORTHO05D007172 6.7e-104 381.7 404 53.2
Sed0025588 Sechium edule HOM05D005759 ORTHO05D007172 9.7e-103 377.9 394 53.6
CsaV3_2G032950 Cucumis sativus L. HOM05D005759 ORTHO05D007172 1.7e-102 377.1 396 54.3
Manes.07G091866 Manihot esculenta HOM05D005759 ORTHO05D007172 3.1e-101 372.9 401 52.1
Gohir.D10G206700 Gossypium hirsutum HOM05D005759 ORTHO05D007172 4.1e-101 372.5 398 54.3
QL04p040912 Quercus lobata HOM05D005759 ORTHO05D007172 9.1e-101 371.3 398 53.3
Gorai.011G232200 Gossypium raimondii HOM05D005759 ORTHO05D007172 1.2e-100 370.9 398 54.3
vmacro10276 Vaccinium macrocarpon HOM05D005759 ORTHO05D007172 5.9e-100 368.6 394 53.3
ClCG08G008080 Citrullus lanatus HOM05D005759 ORTHO05D007172 2.9e-99 366.3 398 53.3
COL.COLO4_35597 Corchorus olitorius HOM05D005759 ORTHO05D007172 3.8e-99 365.9 398 52.3
Hma1.2p1_0352F.1_g133040 Hydrangea macrophylla HOM05D005759 ORTHO05D007172 4.2e-98 362.5 411 50.1
Actinidia31089 Actinidia chinensis HOM05D005759 ORTHO05D007172 1.6e-97 360.5 398 52.5
Potri.010G234000 Populus trichocarpa HOM05D005759 ORTHO05D007172 3.6e-97 359.4 393 53.9
Rhsim09G0144200 Rhododendron simsii HOM05D005759 ORTHO05D007172 4.7e-97 359.0 396 50.5
TWI38G0593 Tripterygium wilfordii HOM05D005759 ORTHO05D007172 3.0e-96 356.3 404 51.0
THA.LOC104826349 Tarenaya hassleriana HOM05D005759 ORTHO05D007172 1.3e-94 350.9 395 49.9
Oeu059850.1 Olea europaea HOM05D005759 ORTHO05D007172 2.4e-93 346.7 388 51.8
Sabra10G0181400 Salix brachista HOM05D005759 ORTHO05D007172 5.3e-93 345.5 409 52.3
CANSAT56G0546 Cannabis sativa HOM05D005759 ORTHO05D007172 3.5e-92 342.8 396 51.5
Ciclev10031564m.g Citrus clementina HOM05D005759 ORTHO05D007172 7.7e-92 341.7 385 52.2
RhsimUnG0061600 Rhododendron simsii HOM05D005759 ORTHO05D007172 3.8e-91 339.3 437 45.8
Atru.chr12.959 Acer truncatum HOM05D005759 ORTHO05D007172 5.5e-90 335.5 334 57.2
Actinidia34708 Actinidia chinensis HOM05D005759 ORTHO05D007172 2.1e-89 333.6 398 50.3
Lalb_Chr03g0036351 Lupinus albus HOM05D005759 ORTHO05D007172 2.7e-89 333.2 399 48.1
GSVIVG01034722001 Vitis vinifera HOM05D005759 ORTHO05D007172 2.6e-87 326.6 385 48.6
TPR.G7613 Trifolium pratense HOM05D005759 ORTHO05D007172 7.5e-87 325.1 386 47.4
CSS0028406 Camellia sinensis var. sinensis HOM05D005759 ORTHO05D007172 2.2e-86 323.6 395 49.9
Medtr1g050730 Medicago truncatula HOM05D005759 ORTHO05D007172 8.2e-86 321.6 386 47.7
Hund06749 Selenicereus undatus HOM05D005759 ORTHO05D007172 4.1e-85 319.3 369 50.1
DCAR_030749 Daucus carota HOM05D005759 ORTHO05D007172 9.1e-85 318.2 382 46.1
EL10Ac4g08636 Beta vulgaris HOM05D005759 ORTHO05D007172 3.5e-84 316.2 390 46.9
AUR62041532 Chenopodium quinoa HOM05D005759 ORTHO05D007172 7.7e-84 315.1 340 50.9
PGR142G1839 Punica granatum HOM05D005759 ORTHO05D007172 1.0e-83 314.7 375 50.9
Aa31LG5G7620 Aethionema arabicum HOM05D005759 ORTHO05D007172 2.9e-83 313.2 393 48.6
Cc02_g10290 Coffea canephora HOM05D005759 ORTHO05D007172 2.9e-83 313.2 400 45.8
AUR62041544 Chenopodium quinoa HOM05D005759 ORTHO05D007172 5.0e-83 312.4 333 52.3
arahy.Tifrunner.gnm1.ann1.Y61W31 Arachis hypogaea HOM05D005759 ORTHO05D007172 1.9e-82 310.5 393 46.8
AT2G28600 Arabidopsis thaliana HOM05D005759 ORTHO05D007172 4.2e-82 309.3 393 46.3
AL4G23090 Arabidopsis lyrata HOM05D005759 ORTHO05D007172 9.4e-82 308.1 389 47.0
arahy.Tifrunner.gnm1.ann1.0Q505S Arachis hypogaea HOM05D005759 ORTHO05D007172 9.4e-82 308.1 393 46.3
CARHR121620 Cardamine hirsuta HOM05D005759 ORTHO05D007172 2.7e-81 306.6 385 46.2
Nitab4.5_0002259g0090 Nicotiana tabacum HOM05D005759 ORTHO05D007172 2.7e-81 306.6 373 46.6
Nitab4.5_0010486g0020 Nicotiana tabacum HOM05D005759 ORTHO05D007172 3.6e-81 306.2 369 47.2
Glyma.02G165400 Glycine max HOM05D005759 ORTHO05D007172 1.0e-80 304.7 397 44.1
A08p00720 Brassica napus HOM05D005759 ORTHO05D007172 1.8e-80 303.9 391 47.1
BraA08t32129Z Brassica rapa HOM05D005759 ORTHO05D007172 1.8e-80 303.9 391 47.1
Aqoxy1G00957 Aquilegia oxysepala HOM05D005759 ORTHO05D007172 4.0e-80 302.8 384 46.4
HanXRQChr14g0456321 Helianthus annuus HOM05D005759 ORTHO05D007172 8.8e-80 301.6 384 46.1
Ah.04g163640 Amaranthus hybridus HOM05D005759 ORTHO05D007172 1.2e-79 301.2 382 45.5
Lj5g0004167 Lotus japonicus HOM05D005759 ORTHO05D007172 2.6e-79 300.1 343 47.2
SGA_v2.0_scaffold13G06508 Striga asiatica HOM05D005759 ORTHO05D007172 4.4e-79 299.3 366 46.4
VMungo0720G2821 Vigna mungo HOM05D005759 ORTHO05D007172 4.4e-79 299.3 341 47.8
CAN.G135.64 Capsicum annuum HOM05D005759 ORTHO05D007172 1.8e-77 293.9 369 46.6
Phvul.007G245100 Phaseolus vulgaris HOM05D005759 ORTHO05D007172 2.4e-77 293.5 408 44.4
SalBow6G0601 Salvia bowleyana HOM05D005759 ORTHO05D007172 4.1e-77 292.7 381 45.7
Psat6g094520 Pisum sativum HOM05D005759 ORTHO05D007172 7.0e-77 292.0 387 45.7
Lsat_1_v5_gn_2_102781 Lactuca sativa HOM05D005759 ORTHO05D007172 1.2e-76 291.2 369 46.1
MBI17_g30596_MAGBIO Magnolia biondii HOM05D005759 ORTHO05D007172 4.5e-76 289.3 397 43.3
PGSC0003DMG400027344 Solanum tuberosum HOM05D005759 ORTHO05D007172 7.7e-76 288.5 369 46.9
Peaxi162Scf00244g00007 Petunia axillaris HOM05D005759 ORTHO05D007172 1.0e-75 288.1 339 48.1
MSTRG.409 Avicennia marina HOM05D005759 ORTHO05D007172 2.9e-75 286.6 346 48.0
Nn2g13981 Nelumbo nucifera HOM05D005759 ORTHO05D007172 2.9e-75 286.6 397 44.6
Solyc11g007610.2 Solanum lycopersicum HOM05D005759 ORTHO05D007172 2.9e-75 286.6 369 45.5
Carub.0004s0956 Capsella rubella HOM05D005759 ORTHO05D007172 1.1e-74 284.6 386 45.3
CDE04G0943 Ceratophyllum demersum HOM05D005759 ORTHO05D007172 1.1e-74 284.6 379 45.4
Migut.F01660 Erythranthe guttata HOM05D005759 ORTHO05D007172 1.5e-74 284.3 357 45.7
Sopen11g003460 Solanum pennellii HOM05D005759 ORTHO05D007172 2.5e-74 283.5 369 45.0
Sp4g11420 Schrenkiella parvula HOM05D005759 ORTHO05D007172 9.5e-74 281.6 394 45.7
Thhalv10016555m.g Eutrema salsugineum HOM05D005759 ORTHO05D007172 2.3e-72 276.9 394 44.4
HanXRQChr16g0513241 Helianthus annuus HOM05D005759 ORTHO05D007172 2.3e-72 276.9 338 52.1
PSO339G3253 Papaver somniferum HOM05D005759 ORTHO05D007172 5.2e-72 275.8 368 43.5
Sc06g0002190 Simmondsia chinensis HOM05D005759 ORTHO05D007172 8.8e-72 275.0 372 44.1
Zm00001eb164020 Zea mays HOM05D005759 ORTHO05D007172 2.2e-70 270.4 378 43.7
ATR0820G119 Amborella trichopoda HOM05D005759 ORTHO05D007172 1.6e-68 264.2 387 41.3
PSO384G4559 Papaver somniferum HOM05D005759 ORTHO05D007172 1.6e-68 264.2 369 42.8
HPP92_024384 Vanilla planifolia HOM05D005759 ORTHO05D007172 4.5e-68 262.7 366 42.3
Eucgr.G02717 Eucalyptus grandis HOM05D005759 ORTHO05D007172 1.3e-67 261.2 339 42.8
unitig_736.g22320 Utricularia gibba HOM05D005759 ORTHO05D007172 1.7e-67 260.8 405 40.5
Os12g0147500 Oryza sativa ssp. japonica HOM05D005759 ORTHO05D007172 5.6e-66 255.8 373 43.4
BolC3t21576H Brassica oleracea HOM05D005759 ORTHO05D007172 1.2e-65 254.6 391 42.5
BcaB04g16965 Brassica carinata HOM05D005759 ORTHO05D007172 1.6e-65 254.2 390 41.0
C03p92620 Brassica napus HOM05D005759 ORTHO05D007172 1.6e-65 254.2 391 42.2
BcaC01g01514 Brassica carinata HOM05D005759 ORTHO05D007172 6.8e-64 248.8 391 42.2
Duzib128G1757 Durio zibethinus HOM05D005759 ORTHO05D007172 2.9e-62 243.4 186 65.1
ECA238G2526 Erigeron canadensis HOM05D005759 ORTHO05D007172 1.0e-59 235.0 340 41.2
Nn6g35073 Nelumbo nucifera HOM05D005759 ORTHO05D007172 1.0e-59 235.0 387 41.1
Migut.F00917 Erythranthe guttata HOM05D005759 ORTHO05D007172 8.9e-56 221.9 347 41.2
SalBow4G3335 Salvia bowleyana HOM05D005759 ORTHO05D007172 2.6e-55 220.3 217 52.1
Ca_06884_v3 Cicer arietinum L. HOM05D005759 ORTHO05D007172 1.4e-53 214.5 300 44.0
FAN01G1973 Fragaria x ananassa HOM05D005759 ORTHO05D007172 1.5e-50 204.5 333 45.3
PSO063G1818 Papaver somniferum HOM05D005759 ORTHO05D007172 6.2e-49 199.1 223 47.5
SGA_v2.0_scaffold62G21347 Striga asiatica HOM05D005759 ORTHO05D007172 1.8e-48 197.6 212 47.2
unitig_899.g14480 Utricularia gibba HOM05D005759 ORTHO05D007172 1.0e-43 181.8 208 42.8
CSS0000330 Camellia sinensis var. sinensis HOM05D005759 ORTHO05D007172 1.8e-40 171.0 222 46.8
Zm00001eb086490 Zea mays HOM05D005759 ORTHO05D007172 3.9e-35 153.3 162 49.4
Mapoly0120s0020 Marchantia polymorpha HOM05D005759 ORTHO05D007172 1.3e-30 138.3 438 29.5
Pp3c1_25970 Physcomitrium patens HOM05D005759 ORTHO05D007172 2.7e-28 130.6 366 29.0
AagrBONN_evm.TU.Sc2ySwM_228.2343 Anthoceros agrestis HOM05D005759 ORTHO05D007172 4.8e-25 119.8 396 26.0
Cpa.g.sc720.1 Carica papaya HOM05D005759 ORTHO05D007172 1.2e-23 115.2 183 39.9
PSO170G6466 Papaver somniferum HOM05D005759 ORTHO05D007172 6.4e-22 109.4 174 39.1
Zm00001eb201540 Zea mays HOM05D005759 ORTHO05D007172 1.2e-20 105.1 102 49.0
GSVIVG01034723001 Vitis vinifera HOM05D005759 ORTHO05D007172 8.1e-17 92.4 85 55.3
Peaxi162Scf00244g00111 Petunia axillaris HOM05D005759 ORTHO05D007172 4.0e-16 90.1 63 66.7
SEGI_00328 Sequoiadendron giganteum HOM05D005759 ORTHO05D000001 6.9e-16 89.4 281 30.6
Lsat_1_v5_gn_7_84341 Lactuca sativa HOM05D005759 ORTHO05D007172 3.3e-10 70.5 65 53.8
PSO339G2548 Papaver somniferum HOM05D005759 ORTHO05D007172 7.4e-10 69.3 70 47.1
Atru.chr6.1559 Acer truncatum HOM05D000032 ORTHO05D007444 2.0e-07 61.2 204 24.0
CBR_g23342 Chara braunii HOM05D005759 ORTHO05D002561 1.7e-06 58.2 467 23.3
Ca_11766_v3 Cicer arietinum L. HOM05D001348 ORTHO05D002788 1.7e-06 58.2 77 45.5


User provided reference genes

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