Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G5487 Fragaria x ananassa HOM05D000162 ORTHO05D000090 2.3e-32 144.4 86 100.0
FAN05G1965 Fragaria x ananassa HOM05D000162 ORTHO05D000090 3.7e-30 137.1 86 81.4
FAN05G2783 Fragaria x ananassa HOM05D000162 ORTHO05D000090 4.8e-30 136.7 86 96.5
FAN05G5046 Fragaria x ananassa HOM05D000162 ORTHO05D000090 8.2e-30 136.0 86 95.3
FAN05G2167 Fragaria x ananassa HOM05D000162 ORTHO05D000090 5.3e-29 133.3 86 94.2
FAN05G2421 Fragaria x ananassa HOM05D000162 ORTHO05D000090 5.3e-29 133.3 86 93.0
FAN05G5335 Fragaria x ananassa HOM05D000162 ORTHO05D000090 9.1e-29 132.5 86 94.2
FAN05G1495 Fragaria x ananassa HOM05D000162 ORTHO05D000090 2.0e-28 131.3 86 93.0
FAN05G4140 Fragaria x ananassa HOM05D000162 ORTHO05D000090 2.0e-28 131.3 86 93.0
FAN05G0618 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.0e-27 129.0 86 91.9
FAN05G5463 Fragaria x ananassa HOM05D000162 ORTHO05D000090 5.0e-27 126.7 86 90.7
FvH4_3g38590 Fragaria vesca HOM05D000162 ORTHO05D000090 4.7e-25 120.2 86 87.2
FvH4_3g44300 Fragaria vesca HOM05D000162 ORTHO05D000090 4.0e-24 117.1 86 84.9
FAN11G0256 Fragaria x ananassa HOM05D000366 ORTHO05D000090 4.0e-24 117.1 86 84.9
FAN21G1117 Fragaria x ananassa HOM05D000162 ORTHO05D000090 4.0e-24 117.1 86 84.9
FvH4_4g22270 Fragaria vesca HOM05D000162 ORTHO05D000090 8.8e-24 115.9 86 69.8
FvH4_3g38020 Fragaria vesca HOM05D000162 ORTHO05D000090 1.5e-23 115.2 86 83.7
FvH4_3g38070 Fragaria vesca HOM05D000162 ORTHO05D000090 1.5e-23 115.2 86 83.7
FAN07G1221 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.5e-23 115.2 86 84.9
FAN07G1899 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.5e-23 115.2 86 69.8
FAN16G3170 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.5e-23 115.2 86 83.7
FvH4_3g38940 Fragaria vesca HOM05D000162 ORTHO05D000090 3.3e-23 114.0 86 81.4
FAN05G3453 Fragaria x ananassa HOM05D000162 ORTHO05D000090 3.3e-23 114.0 86 84.9
FvH4_4g22280 Fragaria vesca HOM05D000162 ORTHO05D000090 5.7e-23 113.2 86 67.4
FvH4_5g09470 Fragaria vesca HOM05D000162 ORTHO05D000090 5.7e-23 113.2 86 83.7
FAN11G2213 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.7e-22 111.7 86 67.4
FAN12G2315 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.7e-22 111.7 86 76.7
FAN16G1190 Fragaria x ananassa HOM05D000162 ORTHO05D000090 2.2e-22 111.3 86 68.6
FAN25G3795 Fragaria x ananassa HOM05D000162 ORTHO05D000090 2.8e-22 110.9 86 67.4
FAN17G0052 Fragaria x ananassa HOM05D000162 ORTHO05D000090 3.7e-22 110.5 87 78.2
FAN11G2810 Fragaria x ananassa HOM05D000162 ORTHO05D000090 2.4e-21 107.8 86 77.9
FAN21G2825 Fragaria x ananassa HOM05D000162 ORTHO05D003288 3.1e-21 107.5 86 79.1
FAN11G1863 Fragaria x ananassa HOM05D000162 ORTHO05D000090 4.1e-21 107.1 81 84.0
FvH4_3g37481 Fragaria vesca HOM05D000162 ORTHO05D000090 7.0e-21 106.3 86 80.2
FAN25G0639 Fragaria x ananassa HOM05D000162 ORTHO05D000090 9.1e-21 105.9 86 77.9
FAN21G2507 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.2e-20 105.5 86 79.1
FAN11G0787 Fragaria x ananassa HOM05D000162 ORTHO05D000090 3.5e-20 104.0 86 76.7
FAN11G2311 Fragaria x ananassa HOM05D000366 ORTHO05D000437 7.7e-20 102.8 86 77.9
FvH4_3g13950 Fragaria vesca HOM05D000162 ORTHO05D000090 1.0e-19 102.4 86 75.6
FAN05G4021 Fragaria x ananassa HOM05D000162 ORTHO05D000090 2.9e-19 100.9 86 79.1
FAN16G0746 Fragaria x ananassa HOM05D000162 ORTHO05D000090 2.9e-19 100.9 86 73.3
FAN16G2089 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.9e-18 98.2 86 60.5
FvH4_6g52550 Fragaria vesca HOM05D000162 ORTHO05D000090 4.2e-18 97.1 86 75.6
RcHm_v2.0_Chr5g0069581 Rosa chinensis HOM05D000162 ORTHO05D000090 4.2e-18 97.1 86 75.6
FAN05G5266 Fragaria x ananassa HOM05D000162 ORTHO05D000090 9.4e-18 95.9 86 76.7
RcHm_v2.0_Chr5g0069601 Rosa chinensis HOM05D000162 ORTHO05D000090 1.2e-17 95.5 86 73.3
RcHm_v2.0_Chr5g0069321 Rosa chinensis HOM05D000162 ORTHO05D000090 1.6e-17 95.1 86 75.6
RcHm_v2.0_Chr5g0077441 Rosa chinensis HOM05D000162 ORTHO05D000090 2.7e-17 94.4 86 72.1
FvH4_3g42430 Fragaria vesca HOM05D000162 ORTHO05D000090 1.0e-16 92.4 86 55.8
FAN21G1717 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.8e-16 91.7 83 71.1
FAN16G2035 Fragaria x ananassa HOM05D000162 ORTHO05D000090 5.2e-16 90.1 50 86.0
FAN16G3207 Fragaria x ananassa HOM05D000162 ORTHO05D000090 6.8e-16 89.7 86 67.4
Prupe.6G091200 Prunus persica HOM05D000162 ORTHO05D000090 6.8e-16 89.7 83 69.9
FvH4_3g35200 Fragaria vesca HOM05D000162 ORTHO05D000090 1.5e-15 88.6 83 69.9
FAN25G0716 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.5e-15 88.6 86 64.0
RcHm_v2.0_Chr5g0074951 Rosa chinensis HOM05D000162 ORTHO05D000090 2.6e-15 87.8 86 62.8
RcHm_v2.0_Chr5g0077521 Rosa chinensis HOM05D000162 ORTHO05D000090 2.6e-15 87.8 81 54.3
FvH4_3g38931 Fragaria vesca HOM05D000162 ORTHO05D000090 5.7e-15 86.7 86 70.9
FAN21G3095 Fragaria x ananassa HOM05D000162 ORTHO05D000090 5.7e-15 86.7 86 51.2
FAN21G3177 Fragaria x ananassa HOM05D000162 ORTHO05D000090 5.7e-15 86.7 86 51.2
FAN16G0884 Fragaria x ananassa HOM05D000162 ORTHO05D000090 7.5e-15 86.3 53 75.5
FAN21G0314 Fragaria x ananassa HOM05D000162 ORTHO05D000090 7.5e-15 86.3 53 73.6
FAN25G0683 Fragaria x ananassa HOM05D000162 ORTHO05D000090 7.5e-15 86.3 86 51.2
FAN05G4416 Fragaria x ananassa HOM05D009709 ORTHO05D003288 9.8e-15 85.9 61 75.4
FAN25G2428 Fragaria x ananassa HOM05D000162 ORTHO05D000090 9.8e-15 85.9 86 65.1
RcHm_v2.0_Chr5g0069351 Rosa chinensis HOM05D000162 ORTHO05D000090 9.8e-15 85.9 52 80.8
RcHm_v2.0_Chr5g0071481 Rosa chinensis HOM05D000162 ORTHO05D000090 9.8e-15 85.9 86 53.5
RcHm_v2.0_Chr5g0073691 Rosa chinensis HOM05D000162 ORTHO05D000090 2.2e-14 84.7 86 67.4
FAN21G1786 Fragaria x ananassa HOM05D000162 ORTHO05D000090 3.7e-14 84.0 53 71.7
RcHm_v2.0_Chr5g0074141 Rosa chinensis HOM05D000162 ORTHO05D000090 3.7e-14 84.0 86 65.1
Prupe.3G138000 Prunus persica HOM05D000162 ORTHO05D000090 8.3e-14 82.8 83 67.5
RcHm_v2.0_Chr5g0073761 Rosa chinensis HOM05D000162 ORTHO05D000090 8.3e-14 82.8 82 53.7
FvH4_3g39890 Fragaria vesca HOM05D000162 ORTHO05D000090 1.1e-13 82.4 86 48.8
FAN05G5528 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.1e-13 82.4 86 53.5
FAN25G3591 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.1e-13 82.4 83 71.1
FAN02G2649 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.4e-13 82.0 62 67.7
FAN25G2369 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.8e-13 81.6 53 71.7
FvH4_3g37480 Fragaria vesca HOM05D000162 ORTHO05D000090 2.4e-13 81.3 86 55.8
FvH4_3g39940 Fragaria vesca HOM05D000162 ORTHO05D000090 2.4e-13 81.3 86 48.8
Prupe.8G027800 Prunus persica HOM05D000162 ORTHO05D000090 2.4e-13 81.3 83 65.1
FvH4_3g40130 Fragaria vesca HOM05D000162 ORTHO05D000090 3.1e-13 80.9 86 47.7
MD11G1115600 Malus domestica HOM05D000162 ORTHO05D000090 4.1e-13 80.5 79 50.6
Prupe.6G081600 Prunus persica HOM05D000162 ORTHO05D000090 5.4e-13 80.1 83 66.3
RcHm_v2.0_Chr5g0071941 Rosa chinensis HOM05D000162 ORTHO05D000090 7.0e-13 79.7 78 52.6
RcHm_v2.0_Chr5g0074981 Rosa chinensis HOM05D000162 ORTHO05D000090 9.1e-13 79.3 81 69.1
FAN11G3989 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.2e-12 79.0 86 50.0
Prupe.3G114700 Prunus persica HOM05D000162 ORTHO05D000090 1.6e-12 78.6 83 62.7
FAN11G3383 Fragaria x ananassa HOM05D000162 ORTHO05D000090 2.7e-12 77.8 86 61.6
RcHm_v2.0_Chr5g0072901 Rosa chinensis HOM05D000162 ORTHO05D000090 2.7e-12 77.8 86 65.1
FAN16G0319 Fragaria x ananassa HOM05D000162 ORTHO05D000090 3.5e-12 77.4 86 61.6
Prupe.6G094000 Prunus persica HOM05D000162 ORTHO05D000090 3.5e-12 77.4 83 63.9
FvH4_3g41820 Fragaria vesca HOM05D000162 ORTHO05D000090 4.5e-12 77.0 86 61.6
RcHm_v2.0_Chr5g0076231 Rosa chinensis HOM05D000162 ORTHO05D000090 4.5e-12 77.0 86 62.8
MD11G1126400 Malus domestica HOM05D000162 ORTHO05D000090 5.9e-12 76.6 83 50.6
FAN11G2376 Fragaria x ananassa HOM05D000162 ORTHO05D000090 7.7e-12 76.3 72 52.8
RcHm_v2.0_Chr5g0074991 Rosa chinensis HOM05D000162 ORTHO05D000090 1.0e-11 75.9 88 63.6
Prupe.6G091000 Prunus persica HOM05D000162 ORTHO05D000090 1.3e-11 75.5 83 61.4
RcHm_v2.0_Chr5g0061091 Rosa chinensis HOM05D000162 ORTHO05D000090 1.3e-11 75.5 82 48.8
FAN21G0653 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.7e-11 75.1 79 58.2
FAN11G0422 Fragaria x ananassa HOM05D000162 ORTHO05D000090 2.3e-11 74.7 86 65.1
RcHm_v2.0_Chr5g0072861 Rosa chinensis HOM05D000162 ORTHO05D000090 2.3e-11 74.7 53 66.0
FAN21G0456 Fragaria x ananassa HOM05D000162 ORTHO05D000090 2.9e-11 74.3 86 61.6
Prupe.6G087600 Prunus persica HOM05D000162 ORTHO05D000090 5.0e-11 73.6 83 43.4
RcHm_v2.0_Chr5g0075791 Rosa chinensis HOM05D000162 ORTHO05D003288 5.0e-11 73.6 53 67.9
Prupe.6G106300 Prunus persica HOM05D000162 ORTHO05D000090 1.1e-10 72.4 83 62.7
FvH4_3g40940 Fragaria vesca HOM05D000162 ORTHO05D000090 1.5e-10 72.0 53 58.5
FAN11G2742 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.5e-10 72.0 53 58.5
FAN21G1710 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.5e-10 72.0 53 58.5
FAN16G0671 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.9e-10 71.6 53 58.5
MD03G1103700 Malus domestica HOM05D000162 ORTHO05D000090 1.9e-10 71.6 83 60.2
FAN25G0672 Fragaria x ananassa HOM05D004391 ORTHO05D000090 2.5e-10 71.2 53 58.5
FAN16G0919 Fragaria x ananassa HOM05D000162 ORTHO05D000090 3.3e-10 70.9 84 46.4
Prupe.6G093300 Prunus persica HOM05D000162 ORTHO05D000090 3.3e-10 70.9 83 47.0
Prupe.6G091400 Prunus persica HOM05D000162 ORTHO05D000090 4.2e-10 70.5 79 63.3
RcHm_v2.0_Chr5g0027731 Rosa chinensis HOM05D000162 ORTHO05D000090 4.2e-10 70.5 52 63.5
FAN11G1276 Fragaria x ananassa HOM05D000162 ORTHO05D000090 5.5e-10 70.1 77 48.1
FAN11G2498 Fragaria x ananassa HOM05D000044 ORTHO05D000090 5.5e-10 70.1 75 45.3
RcHm_v2.0_Chr5g0076241 Rosa chinensis HOM05D000162 ORTHO05D000090 7.2e-10 69.7 72 65.3
RcHm_v2.0_Chr5g0069231 Rosa chinensis HOM05D000162 ORTHO05D000090 3.6e-09 67.4 47 70.2
RcHm_v2.0_Chr5g0072921 Rosa chinensis HOM05D001814 ORTHO05D000090 3.6e-09 67.4 53 60.4
MD03G1113300 Malus domestica HOM05D000162 ORTHO05D000090 8.0e-09 66.2 83 41.0
FAN09G1490 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.0e-08 65.9 52 90.4
FAN16G0588 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.0e-08 65.9 87 42.5
FAN25G0292 Fragaria x ananassa HOM05D000162 ORTHO05D000090 1.4e-08 65.5 84 47.6
Prupe.6G195600 Prunus persica HOM05D000162 ORTHO05D000090 2.3e-08 64.7 53 58.5
FAN11G0418 Fragaria x ananassa HOM05D003757 ORTHO05D000090 4.0e-08 63.9 82 40.2
FAN11G3239 Fragaria x ananassa HOM05D000162 ORTHO05D000090 4.0e-08 63.9 82 40.2
MD03G1113100 Malus domestica HOM05D000162 ORTHO05D000090 6.8e-08 63.2 79 43.0
Actinidia08438 Actinidia chinensis HOM05D000162 ORTHO05D000090 2.0e-07 61.6 83 36.1
FvH4_3g43150 Fragaria vesca HOM05D000162 ORTHO05D000090 3.4e-07 60.8 87 36.8
FvH4_3g43170 Fragaria vesca HOM05D000162 ORTHO05D000090 3.4e-07 60.8 87 36.8
CSS0041306 Camellia sinensis var. sinensis HOM05D000162 ORTHO05D000090 4.4e-07 60.5 79 40.5
FAN04G2497 Fragaria x ananassa HOM05D003302 ORTHO05D003785 5.7e-07 60.1 72 63.9
Prupe.6G090500 Prunus persica HOM05D000162 ORTHO05D000090 5.7e-07 60.1 50 54.0
RcHm_v2.0_Chr5g0041821 Rosa chinensis HOM05D000162 ORTHO05D000090 5.7e-07 60.1 46 60.9
vmacro13800 Vaccinium macrocarpon HOM05D000162 ORTHO05D000090 5.7e-07 60.1 83 32.5
vmacro13797 Vaccinium macrocarpon HOM05D000162 ORTHO05D000090 7.5e-07 59.7 83 34.9
vmacro13802 Vaccinium macrocarpon HOM05D000162 ORTHO05D000090 1.7e-06 58.5 83 32.5
Migut.F00916 Erythranthe guttata HOM05D000162 ORTHO05D000090 2.2e-06 58.2 83 36.1
Peaxi162Scf00154g00039 Petunia axillaris HOM05D000162 ORTHO05D000090 2.8e-06 57.8 85 37.6
Migut.F00914 Erythranthe guttata HOM05D000162 ORTHO05D000090 4.9e-06 57.0 83 36.1
vmacro13730 Vaccinium macrocarpon HOM05D000162 ORTHO05D000090 4.9e-06 57.0 83 30.1
FvH4_3g39650 Fragaria vesca HOM05D000162 ORTHO05D003288 8.3e-06 56.2 60 46.7
FAN11G0438 Fragaria x ananassa HOM05D000027 ORTHO05D001163 8.3e-06 56.2 60 46.7
HanXRQChr07g0204091 Helianthus annuus HOM05D000162 ORTHO05D000090 8.3e-06 56.2 82 34.1


User provided reference genes

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