Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G5239 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1991.5 991 100.0
FAN05G0609 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1918.7 991 97.2
FAN02G1083 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1886.3 991 95.6
FAN14G5183 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1884.4 992 95.5
FvH4_6g10330 Fragaria vesca HOM05D005896 ORTHO05D007250 0.0e+00 1857.4 994 94.3
RcHm_v2.0_Chr3g0461101 Rosa chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1789.6 994 91.0
FAN09G0048 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1696.0 991 88.3
FAN14G5591 Fragaria x ananassa HOM05D005896 ORTHO05D007250 0.0e+00 1573.5 995 83.5
Prupe.6G287100 Prunus persica HOM05D005896 ORTHO05D007250 0.0e+00 1515.4 993 77.4
MD12G1182400 Malus domestica HOM05D005896 ORTHO05D007250 0.0e+00 1494.9 993 76.5
MD04G1168900 Malus domestica HOM05D005896 ORTHO05D007250 0.0e+00 1478.4 993 75.8
QL07p033519 Quercus lobata HOM05D005896 ORTHO05D007250 0.0e+00 1441.8 999 73.8
Dinv35431 Davidia involucrata HOM05D005896 ORTHO05D007250 0.0e+00 1418.3 973 73.4
CANSAT35G1655 Cannabis sativa HOM05D005896 ORTHO05D007250 0.0e+00 1415.6 989 73.8
Manes.09G113900 Manihot esculenta HOM05D005896 ORTHO05D007250 0.0e+00 1412.9 1000 72.3
Actinidia11539 Actinidia chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1409.0 946 74.9
GSVIVG01030240001 Vitis vinifera HOM05D005896 ORTHO05D007250 0.0e+00 1403.7 959 73.5
Atru.chr8.2358 Acer truncatum HOM05D005896 ORTHO05D007250 0.0e+00 1402.9 997 71.7
Thecc.05G004100 Theobroma cacao HOM05D005896 ORTHO05D007250 0.0e+00 1402.5 998 71.5
Sabra06G0082600 Salix brachista HOM05D005896 ORTHO05D007250 0.0e+00 1399.8 976 72.3
Potri.006G106000 Populus trichocarpa HOM05D005896 ORTHO05D007250 0.0e+00 1398.6 982 72.3
TWI77G0262 Tripterygium wilfordii HOM05D005896 ORTHO05D007250 0.0e+00 1395.6 938 75.3
Gorai.012G119800 Gossypium raimondii HOM05D005896 ORTHO05D007250 0.0e+00 1394.4 996 71.4
Gohir.D04G136000 Gossypium hirsutum HOM05D005896 ORTHO05D007250 0.0e+00 1394.0 996 71.3
Medtr7g071990 Medicago truncatula HOM05D005896 ORTHO05D007250 0.0e+00 1392.9 988 71.6
Glyma.18G209600 Glycine max HOM05D005896 ORTHO05D007250 0.0e+00 1386.7 994 70.9
Lj1g0024727 Lotus japonicus HOM05D005896 ORTHO05D007250 0.0e+00 1385.9 962 72.9
Gohir.A04G096200 Gossypium hirsutum HOM05D005896 ORTHO05D007250 0.0e+00 1382.5 997 71.1
Glyma.09G279500 Glycine max HOM05D005896 ORTHO05D007250 0.0e+00 1370.9 942 73.4
Lalb_Chr01g0023511 Lupinus albus HOM05D005896 ORTHO05D007250 0.0e+00 1367.4 932 73.0
Haze_21109 Corylus avellana HOM05D005896 ORTHO05D007250 0.0e+00 1364.7 982 71.9
Ca_26097_v3 Cicer arietinum L. HOM05D005896 ORTHO05D007250 0.0e+00 1364.4 956 72.1
arahy.Tifrunner.gnm1.ann1.2FTV5P Arachis hypogaea HOM05D005896 ORTHO05D007250 0.0e+00 1361.7 955 71.5
arahy.Tifrunner.gnm1.ann1.Q3Q3XE Arachis hypogaea HOM05D005896 ORTHO05D007250 0.0e+00 1361.3 931 72.6
VMungo1383G2905 Vigna mungo HOM05D005896 ORTHO05D007250 0.0e+00 1357.4 929 72.8
CSS0019926 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 0.0e+00 1356.7 990 70.6
Psat3g120600 Pisum sativum HOM05D005896 ORTHO05D007250 0.0e+00 1355.1 945 71.4
Phvul.008G089700 Phaseolus vulgaris HOM05D005896 ORTHO05D007250 0.0e+00 1354.7 922 73.0
MELO3C009120.2 Cucumis melo HOM05D005896 ORTHO05D007250 0.0e+00 1352.8 984 70.9
CSS0029745 Camellia sinensis var. sinensis HOM05D005896 ORTHO05D007250 0.0e+00 1349.3 990 70.3
Nn2g11051 Nelumbo nucifera HOM05D005896 ORTHO05D007250 0.0e+00 1349.0 979 70.4
Sed0010587 Sechium edule HOM05D005896 ORTHO05D007250 0.0e+00 1346.6 966 71.3
Aqoxy2G00762 Aquilegia oxysepala HOM05D005896 ORTHO05D007250 0.0e+00 1346.3 974 70.4
Cc06_g00650 Coffea canephora HOM05D005896 ORTHO05D007250 0.0e+00 1342.0 991 69.0
CsaV3_3G033280 Cucumis sativus L. HOM05D005896 ORTHO05D007250 0.0e+00 1341.3 976 70.8
Eucgr.A00643 Eucalyptus grandis HOM05D005896 ORTHO05D007250 0.0e+00 1339.3 975 71.4
vmacro20337 Vaccinium macrocarpon HOM05D005896 ORTHO05D007250 0.0e+00 1329.7 1006 68.3
Sopen10g034850 Solanum pennellii HOM05D005896 ORTHO05D007250 0.0e+00 1325.5 953 69.7
CAN.G738.1 Capsicum annuum HOM05D005896 ORTHO05D007250 0.0e+00 1323.5 980 68.7
TAR623G1464 Trochodendron aralioides HOM05D005896 ORTHO05D007250 0.0e+00 1317.0 1003 68.6
MSTRG.5530 Avicennia marina HOM05D005896 ORTHO05D007250 0.0e+00 1316.6 960 70.1
ECA236G3210 Erigeron canadensis HOM05D005896 ORTHO05D007250 0.0e+00 1315.4 935 71.2
ClCG10G022550 Citrullus lanatus HOM05D005896 ORTHO05D007250 0.0e+00 1314.7 1071 65.1
PSO339G6300 Papaver somniferum HOM05D005896 ORTHO05D007250 0.0e+00 1310.4 992 67.9
Rhsim05G0227300 Rhododendron simsii HOM05D005896 ORTHO05D007250 0.0e+00 1310.0 941 71.3
HanXRQChr12g0363731 Helianthus annuus HOM05D005896 ORTHO05D007250 0.0e+00 1306.6 942 71.1
Cfa017090 Carpinus fangiana HOM05D005896 ORTHO05D007250 0.0e+00 1301.6 999 68.8
Nitab4.5_0004057g0040 Nicotiana tabacum HOM05D005896 ORTHO05D007250 0.0e+00 1298.5 918 71.2
Migut.J00081 Erythranthe guttata HOM05D005896 ORTHO05D007250 0.0e+00 1296.6 996 67.6
Lsat_1_v5_gn_8_105740 Lactuca sativa HOM05D005896 ORTHO05D007250 0.0e+00 1293.1 955 69.2
Lj2A64G51 Lonicera japonica HOM05D005896 ORTHO05D007250 0.0e+00 1288.9 952 69.7
Sc02g0000680 Simmondsia chinensis HOM05D005896 ORTHO05D007250 0.0e+00 1282.7 981 68.5
TPR.G18656 Trifolium pratense HOM05D005896 ORTHO05D007250 0.0e+00 1277.3 860 73.7
ATR0681G081 Amborella trichopoda HOM05D005896 ORTHO05D007250 0.0e+00 1270.0 970 67.1
CiPaw.09G216900 Carya illinoinensis HOM05D005896 ORTHO05D007250 0.0e+00 1257.3 848 75.6
Ciclev10011082m.g Citrus clementina HOM05D005896 ORTHO05D007250 0.0e+00 1253.0 838 74.6
Solyc10g085400.3 Solanum lycopersicum HOM05D005896 ORTHO05D007250 0.0e+00 1249.2 931 67.5
THA.LOC104823308 Tarenaya hassleriana HOM05D005896 ORTHO05D007250 0.0e+00 1238.0 995 64.6
SalBow5G4224 Salvia bowleyana HOM05D005896 ORTHO05D007250 0.0e+00 1234.6 977 66.1
Nitab4.5_0001703g0070 Nicotiana tabacum HOM05D005896 ORTHO05D007250 0.0e+00 1228.0 918 68.2
AUR62006318 Chenopodium quinoa HOM05D005896 ORTHO05D007250 0.0e+00 1215.3 957 65.2
Thhalv10020004m.g Eutrema salsugineum HOM05D005896 ORTHO05D007250 0.0e+00 1201.4 988 62.9
HPP92_013852 Vanilla planifolia HOM05D005896 ORTHO05D007250 0.0e+00 1200.3 953 65.4
AL3G19830 Arabidopsis lyrata HOM05D005896 ORTHO05D007250 0.0e+00 1194.5 932 66.3
BraA03t12806Z Brassica rapa HOM05D005896 ORTHO05D007250 0.0e+00 1192.2 987 63.1
A03p36350 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1191.0 987 62.9
Carub.0003s0795 Capsella rubella HOM05D005896 ORTHO05D007250 0.0e+00 1184.9 942 64.1
BcaC01g04196 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1182.2 1000 62.0
BcaB04g18571 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1181.0 995 62.2
COL.COLO4_14429 Corchorus olitorius HOM05D005896 ORTHO05D007250 0.0e+00 1180.6 994 64.4
AT3G08840 Arabidopsis thaliana HOM05D005896 ORTHO05D007250 0.0e+00 1180.2 946 63.8
DCAR_028898 Daucus carota HOM05D005896 ORTHO05D007250 0.0e+00 1176.0 937 65.3
BolC3t16668H Brassica oleracea HOM05D005896 ORTHO05D007250 0.0e+00 1175.2 1000 62.0
Os07g0691200 Oryza sativa ssp. japonica HOM05D005896 ORTHO05D007250 0.0e+00 1175.2 923 64.2
Zm00001eb111890 Zea mays HOM05D005896 ORTHO05D007250 0.0e+00 1154.8 960 61.4
BcaC09g49362 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1148.7 916 63.8
C03p43970 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1145.6 978 61.7
BcaB04g20289 Brassica carinata HOM05D005896 ORTHO05D007250 0.0e+00 1141.3 931 63.4
A01p29640 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1132.9 917 63.2
SEGI_19702 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 0.0e+00 1132.9 930 62.7
C01p37440 Brassica napus HOM05D005896 ORTHO05D007250 0.0e+00 1129.0 998 60.2
BraA01t03093Z Brassica rapa HOM05D005896 ORTHO05D007250 0.0e+00 1123.2 932 62.9
Aa31LG5G18810 Aethionema arabicum HOM05D005896 ORTHO05D007250 0.0e+00 1081.2 845 65.6
HPP92_013866 Vanilla planifolia HOM05D005896 ORTHO05D007250 0.0e+00 1081.2 953 60.4
CAN.G1288.7 Capsicum annuum HOM05D005896 ORTHO05D007250 5.5e-280 968.0 823 62.0
SMO228G0083 Selaginella moellendorffii HOM05D005896 ORTHO05D007250 1.7e-273 946.4 926 52.9
A03p36380 Brassica napus HOM05D005896 ORTHO05D007250 1.6e-271 939.9 821 60.2
Mapoly0266s0003 Marchantia polymorpha HOM05D005896 ORTHO05D007250 3.0e-262 909.1 926 51.1
Hma1.2p1_2300F.1_g319233 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 9.2e-259 897.5 603 75.1
Peaxi162Scf00009g01011 Petunia axillaris HOM05D005896 ORTHO05D007250 5.9e-258 894.8 633 69.5
Hma1.2p1_2300F.1_g319236 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 2.2e-252 876.3 603 74.1
HanXRQChr16g0509701 Helianthus annuus HOM05D005896 ORTHO05D007250 4.0e-246 855.5 718 64.3
Actinidia26603 Actinidia chinensis HOM05D005896 ORTHO05D007250 3.0e-241 839.3 590 72.4
PRCOL_00001217 Prasinoderma coloniale HOM05D005896 ORTHO05D007250 2.5e-208 729.9 945 45.0
CARHR083150 Cardamine hirsuta HOM05D005896 ORTHO05D007250 6.2e-207 725.3 595 63.2
MBI15_g29358_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 4.0e-206 722.6 537 70.2
AUR62026359 Chenopodium quinoa HOM05D005896 ORTHO05D007250 1.4e-203 714.1 919 46.5
AagrBONN_evm.TU.Sc2ySwM_362.2825 Anthoceros agrestis HOM05D005896 ORTHO05D007250 1.4e-195 687.6 679 53.0
Oeu023744.1 Olea europaea HOM05D005896 ORTHO05D007250 1.6e-194 684.1 480 70.0
BolC1t03711H Brassica oleracea HOM05D005896 ORTHO05D007250 3.6e-186 656.4 567 60.5
Pp3c18_18940 Physcomitrium patens HOM05D005896 ORTHO05D007250 4.7e-186 656.0 750 47.9
PGSC0003DMG400011105 Solanum tuberosum HOM05D005896 ORTHO05D007250 3.2e-179 633.3 452 68.4
Cpa.g.c34215 Carica papaya HOM05D005896 ORTHO05D007250 8.5e-172 608.6 396 74.7
Oeu033807.1 Olea europaea HOM05D005896 ORTHO05D007250 3.6e-130 470.3 382 66.0
Hma1.2p1_2300F.1_g319240 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 1.9e-123 448.0 268 81.0
BolC1t03712H Brassica oleracea HOM05D005896 ORTHO05D007250 1.9e-99 368.2 278 67.6
Peaxi162Scf00009g01010 Petunia axillaris HOM05D005896 ORTHO05D007250 7.4e-99 366.3 280 68.6
Hma1.2p1_3169F.1_g333550 Hydrangea macrophylla HOM05D005896 ORTHO05D007250 1.2e-93 349.0 336 56.5
Nn2g16051 Nelumbo nucifera HOM05D005896 ORTHO05D007250 1.0e-87 329.3 216 77.8
Hund03771 Selenicereus undatus HOM05D005896 ORTHO05D007250 1.4e-76 292.4 274 55.8
SEGI_37805 Sequoiadendron giganteum HOM05D005896 ORTHO05D007250 2.0e-67 261.9 172 72.7
CBR_g38233 Chara braunii HOM05D005896 ORTHO05D007250 8.0e-61 240.0 273 49.5
CBR_g45569 Chara braunii HOM05D005896 ORTHO05D007250 2.1e-53 215.3 216 50.5
MBI15_g29355_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 4.4e-43 181.0 279 45.2
MBI15_g25466_MAGBIO Magnolia biondii HOM05D005896 ORTHO05D007250 1.8e-36 159.1 217 48.4
Solyc09g031528.1 Solanum lycopersicum HOM05D005896 ORTHO05D007250 1.3e-34 152.9 97 74.2
CiPaw.01G264800 Carya illinoinensis HOM05D001401 ORTHO05D002222 5.4e-25 120.9 82 73.2
CBR_g38232 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-22 113.2 271 32.5
Cre15.g635650 Chlamydomonas reinhardtii HOM05D005896 ORTHO05D007250 9.5e-22 110.2 420 24.8
TPR.G7700 Trifolium pratense HOM05D005896 ORTHO05D007250 1.8e-20 105.9 105 57.1
Solyc09g015130.4 Solanum lycopersicum HOM05D005896 ORTHO05D007250 8.3e-18 97.1 58 79.3
Glyma.16G116800 Glycine max HOM05D005896 ORTHO05D007250 1.9e-14 85.9 69 63.8
COL.COLO4_03233 Corchorus olitorius HOM05D005896 ORTHO05D007250 4.1e-09 68.2 228 27.6
QL06p031927 Quercus lobata HOM05D005896 ORTHO05D007250 6.0e-08 64.3 52 63.5
Solyc07g032788.1 Solanum lycopersicum HOM05D005896 ORTHO05D007250 1.5e-06 59.7 37 73.0
TAR381G1729 Trochodendron aralioides HOM05D000406 ORTHO05D002714 7.3e-06 57.4 31 83.9


User provided reference genes

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