Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G4646 Fragaria x ananassa HOM05D000319 ORTHO05D005616 1.2e-103 379.8 190 100.0
FvH4_6g29310 Fragaria vesca HOM05D000319 ORTHO05D005616 3.5e-82 308.5 267 65.5
FAN14G4091 Fragaria x ananassa HOM05D000319 ORTHO05D005616 4.3e-80 301.6 274 63.9
RcHm_v2.0_Chr2g0134501 Rosa chinensis HOM05D000319 ORTHO05D005616 2.4e-75 285.8 267 60.7
FAN02G2104 Fragaria x ananassa HOM05D000319 ORTHO05D005616 5.4e-75 284.6 226 70.8
arahy.Tifrunner.gnm1.ann1.0F4L5T Arachis hypogaea HOM05D000319 ORTHO05D005616 8.6e-73 277.3 241 63.9
FAN09G4049 Fragaria x ananassa HOM05D000319 ORTHO05D005616 5.6e-72 274.6 252 63.5
MD17G1215900 Malus domestica HOM05D000319 ORTHO05D005616 1.8e-70 269.6 267 57.7
MD17G1216000 Malus domestica HOM05D000319 ORTHO05D005616 3.1e-70 268.9 267 57.7
arahy.Tifrunner.gnm1.ann1.69SMRU Arachis hypogaea HOM05D000319 ORTHO05D005616 5.2e-70 268.1 267 58.1
Ca_01047_v3 Cicer arietinum L. HOM05D000319 ORTHO05D005616 6.8e-70 267.7 267 57.3
Prupe.3G092100 Prunus persica HOM05D000319 ORTHO05D005616 2.2e-68 262.7 267 56.6
PGR044G1796 Punica granatum HOM05D000319 ORTHO05D005616 2.2e-68 262.7 269 55.4
THA.LOC104801256 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 4.9e-68 261.5 270 56.7
Cpa.g.sc52.96 Carica papaya HOM05D000319 ORTHO05D005616 1.4e-67 260.0 268 56.7
THA.LOC104825981 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 1.9e-67 259.6 269 56.5
Thhalv10028900m.g Eutrema salsugineum HOM05D000319 ORTHO05D005616 2.4e-67 259.2 269 57.2
HanXRQChr15g0467021 Helianthus annuus HOM05D000319 ORTHO05D005616 2.4e-67 259.2 268 56.7
Medtr2g104110 Medicago truncatula HOM05D000319 ORTHO05D005616 4.1e-67 258.5 267 56.2
TPR.G37240 Trifolium pratense HOM05D000319 ORTHO05D005616 4.1e-67 258.5 267 55.8
Lalb_Chr22g0350801 Lupinus albus HOM05D000319 ORTHO05D005616 7.1e-67 257.7 267 56.6
TWI18G1113 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 7.1e-67 257.7 268 56.3
MBI11_g38515_MAGBIO Magnolia biondii HOM05D000319 ORTHO05D005616 9.2e-67 257.3 246 58.1
Glyma.15G006400 Glycine max HOM05D000319 ORTHO05D005616 1.2e-66 256.9 267 54.7
Atru.chr5.1559 Acer truncatum HOM05D000319 ORTHO05D005616 1.6e-66 256.5 268 56.3
Carub.0006s3456 Capsella rubella HOM05D000319 ORTHO05D005616 1.6e-66 256.5 269 56.5
CiPaw.05G169400 Carya illinoinensis HOM05D000319 ORTHO05D005616 1.6e-66 256.5 267 55.4
Glyma.13G367000 Glycine max HOM05D000319 ORTHO05D005616 1.6e-66 256.5 267 54.3
AL6G50470 Arabidopsis lyrata HOM05D000319 ORTHO05D005616 2.1e-66 256.1 269 56.5
BcaB01g02475 Brassica carinata HOM05D000319 ORTHO05D005616 2.1e-66 256.1 269 56.5
CARHR250870 Cardamine hirsuta HOM05D000319 ORTHO05D005616 2.1e-66 256.1 269 56.9
CSS0020063 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 3.5e-66 255.4 268 55.2
Duzib138G1611 Durio zibethinus HOM05D000319 ORTHO05D005616 3.5e-66 255.4 268 56.0
Cfa008743 Carpinus fangiana HOM05D000319 ORTHO05D005616 7.8e-66 254.2 267 54.7
Phvul.005G179400 Phaseolus vulgaris HOM05D000319 ORTHO05D005616 7.8e-66 254.2 267 54.3
Haze_11759 Corylus avellana HOM05D000319 ORTHO05D005616 1.0e-65 253.8 267 54.7
CANSAT56G1819 Cannabis sativa HOM05D000319 ORTHO05D005616 1.3e-65 253.4 267 55.8
Sp6g02490 Schrenkiella parvula HOM05D000319 ORTHO05D005616 2.3e-65 252.7 269 55.8
Duzib211G0655 Durio zibethinus HOM05D000319 ORTHO05D005616 3.0e-65 252.3 268 54.5
AT4G02580 Arabidopsis thaliana HOM05D000319 ORTHO05D005616 3.9e-65 251.9 269 55.8
Aa31LG5G2210 Aethionema arabicum HOM05D000319 ORTHO05D005616 5.1e-65 251.5 269 55.8
BolC9t53140H Brassica oleracea HOM05D000319 ORTHO05D005616 5.1e-65 251.5 269 56.1
COL.COLO4_06081 Corchorus olitorius HOM05D000319 ORTHO05D005616 5.1e-65 251.5 268 55.2
ECA247G3951 Erigeron canadensis HOM05D000319 ORTHO05D005616 6.6e-65 251.1 269 55.4
Nn1g02549 Nelumbo nucifera HOM05D000319 ORTHO05D005616 6.6e-65 251.1 265 55.5
TWI75G0800 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 8.6e-65 250.8 268 54.9
MSTRG.18283 Avicennia marina HOM05D000319 ORTHO05D005616 1.1e-64 250.4 268 54.1
BcaB01g02030 Brassica carinata HOM05D000319 ORTHO05D005616 1.1e-64 250.4 266 56.0
Eucgr.K03315 Eucalyptus grandis HOM05D000319 ORTHO05D005616 1.1e-64 250.4 268 55.6
Gorai.004G056700 Gossypium raimondii HOM05D000319 ORTHO05D005616 1.1e-64 250.4 268 54.1
Thecc.01G267900 Theobroma cacao HOM05D000319 ORTHO05D005616 1.1e-64 250.4 268 54.9
Lsat_1_v5_gn_9_8201 Lactuca sativa HOM05D000319 ORTHO05D005616 1.5e-64 250.0 268 53.7
Gohir.A08G045400 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.9e-64 249.6 268 54.1
Gohir.D08G055800 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.9e-64 249.6 268 54.1
SalBow4G3161 Salvia bowleyana HOM05D000319 ORTHO05D005616 1.9e-64 249.6 267 53.9
BcaC04g23998 Brassica carinata HOM05D000319 ORTHO05D000903 2.5e-64 249.2 266 56.0
C09p02100 Brassica napus HOM05D000319 ORTHO05D000903 2.5e-64 249.2 266 56.0
Gohir.D07G214600 Gossypium hirsutum HOM05D000319 ORTHO05D005616 2.5e-64 249.2 268 54.5
Actinidia19981 Actinidia chinensis HOM05D000319 ORTHO05D005616 3.3e-64 248.8 268 54.1
PSO832G0193 Papaver somniferum HOM05D000319 ORTHO05D005616 3.3e-64 248.8 269 55.0
Rhsim13G0030900 Rhododendron simsii HOM05D000319 ORTHO05D005616 3.3e-64 248.8 268 54.5
SGA_v2.0_scaffold1G00552 Striga asiatica HOM05D000319 ORTHO05D005616 3.3e-64 248.8 268 54.1
Gorai.001G242600 Gossypium raimondii HOM05D000319 ORTHO05D005616 5.6e-64 248.1 268 54.5
Lj3g0018932 Lotus japonicus HOM05D000319 ORTHO05D005616 5.6e-64 248.1 267 53.6
GSVIVG01000718001 Vitis vinifera HOM05D000319 ORTHO05D005616 7.3e-64 247.7 268 53.7
CiPaw.06G060900 Carya illinoinensis HOM05D000319 ORTHO05D005616 1.2e-63 246.9 267 53.6
Dinv34565 Davidia involucrata HOM05D000319 ORTHO05D005616 1.2e-63 246.9 268 53.4
PSO210G0711 Papaver somniferum HOM05D000319 ORTHO05D005616 1.6e-63 246.5 269 54.6
A09p02000 Brassica napus HOM05D000319 ORTHO05D000903 2.1e-63 246.1 266 55.6
BolC3t16066H Brassica oleracea HOM05D000319 ORTHO05D005616 2.1e-63 246.1 267 55.4
Cc01_g18870 Coffea canephora HOM05D000319 ORTHO05D005616 2.1e-63 246.1 268 53.0
Manes.01G201800 Manihot esculenta HOM05D000319 ORTHO05D005616 2.1e-63 246.1 268 53.7
Migut.D00371 Erythranthe guttata HOM05D000319 ORTHO05D005616 2.8e-63 245.7 268 53.4
Aqoxy5G00356 Aquilegia oxysepala HOM05D000319 ORTHO05D005616 3.6e-63 245.4 265 54.3
Gohir.A07G208700 Gossypium hirsutum HOM05D000319 ORTHO05D005616 4.7e-63 245.0 268 53.7
A03p30990 Brassica napus HOM05D000319 ORTHO05D000903 6.2e-63 244.6 266 55.3
Hma1.2p1_0760F.1_g214240 Hydrangea macrophylla HOM05D000319 ORTHO05D005616 8.1e-63 244.2 269 52.8
Lj2A1160T39 Lonicera japonica HOM05D000319 ORTHO05D005616 1.4e-62 243.4 268 53.7
Manes.14G005900 Manihot esculenta HOM05D000319 ORTHO05D005616 1.8e-62 243.0 268 53.4
BcaC01g06747 Brassica carinata HOM05D000319 ORTHO05D000903 2.4e-62 242.7 264 55.3
C03p37760 Brassica napus HOM05D000319 ORTHO05D005616 2.4e-62 242.7 264 55.3
Ciclev10021811m.g Citrus clementina HOM05D000319 ORTHO05D005616 2.4e-62 242.7 269 53.2
Sc17g0001020 Simmondsia chinensis HOM05D000319 ORTHO05D005616 2.4e-62 242.7 268 53.0
Ah.11g049990 Amaranthus hybridus HOM05D000319 ORTHO05D005616 3.1e-62 242.3 268 52.6
ClCG07G012250 Citrullus lanatus HOM05D000319 ORTHO05D005616 3.1e-62 242.3 267 53.2
Sed0023498 Sechium edule HOM05D000319 ORTHO05D005616 3.1e-62 242.3 267 53.6
TAR365G0186 Trochodendron aralioides HOM05D000319 ORTHO05D005616 3.1e-62 242.3 265 54.7
BraA03t12276Z Brassica rapa HOM05D000319 ORTHO05D000903 4.0e-62 241.9 266 54.5
Nn3g19503 Nelumbo nucifera HOM05D000319 ORTHO05D005616 5.2e-62 241.5 265 53.6
Potri.005G218000 Populus trichocarpa HOM05D000319 ORTHO05D005616 6.8e-62 241.1 268 53.0
BraA09t35850Z Brassica rapa HOM05D000319 ORTHO05D000903 8.9e-62 240.7 266 54.9
DCAR_018446 Daucus carota HOM05D000319 ORTHO05D005616 8.9e-62 240.7 268 53.4
Potri.002G045200 Populus trichocarpa HOM05D000319 ORTHO05D005616 8.9e-62 240.7 268 52.6
Actinidia09093 Actinidia chinensis HOM05D000319 ORTHO05D005616 1.2e-61 240.4 268 53.0
MELO3C017843.2 Cucumis melo HOM05D000319 ORTHO05D005616 2.6e-61 239.2 267 52.8
Nitab4.5_0000187g0170 Nicotiana tabacum HOM05D000319 ORTHO05D005616 5.8e-61 238.0 267 52.4
EL10Ac5g10471 Beta vulgaris HOM05D000319 ORTHO05D005616 7.6e-61 237.7 268 51.9
CsaV3_4G001900 Cucumis sativus L. HOM05D000319 ORTHO05D005616 7.6e-61 237.7 267 52.1
Nitab4.5_0003053g0020 Nicotiana tabacum HOM05D000319 ORTHO05D005616 9.9e-61 237.3 267 52.4
HPP92_010249 Vanilla planifolia HOM05D000319 ORTHO05D005616 3.8e-60 235.3 218 58.7
CAN.G1072.4 Capsicum annuum HOM05D000319 ORTHO05D005616 1.9e-59 233.0 267 50.9
CDE06G1797 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 2.4e-59 232.6 270 50.0
Hund09567 Selenicereus undatus HOM05D000319 ORTHO05D005616 2.4e-59 232.6 268 49.6
Psat5g303080 Pisum sativum HOM05D000319 ORTHO05D005616 3.2e-59 232.3 267 52.1
AUR62011945 Chenopodium quinoa HOM05D000319 ORTHO05D005616 5.4e-59 231.5 268 50.4
AUR62032260 Chenopodium quinoa HOM05D000319 ORTHO05D005616 5.4e-59 231.5 268 50.4
ATR0665G648 Amborella trichopoda HOM05D000319 ORTHO05D005616 4.6e-58 228.4 270 48.5
Sopen09g027620 Solanum pennellii HOM05D000319 ORTHO05D005616 4.6e-58 228.4 268 52.2
Sed0021269 Sechium edule HOM05D000319 ORTHO05D005616 7.8e-58 227.6 267 52.1
PGSC0003DMG400019303 Solanum tuberosum HOM05D000319 ORTHO05D005616 1.3e-57 226.9 266 50.4
unitig_26.g10148 Utricularia gibba HOM05D000319 ORTHO05D005616 1.7e-57 226.5 268 50.7
CDE07G0560 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 6.6e-57 224.6 270 48.1
Sabra02G0036300 Salix brachista HOM05D000319 ORTHO05D005616 1.1e-56 223.8 319 45.5
VMungo1080G0987 Vigna mungo HOM05D000319 ORTHO05D005616 3.3e-56 222.2 252 52.8
vmacro02626 Vaccinium macrocarpon HOM05D000319 ORTHO05D005616 7.3e-56 221.1 293 46.8
SGA_v2.0_scaffold138G35283 Striga asiatica HOM05D000319 ORTHO05D005616 3.6e-55 218.8 294 48.0
Zm00001eb292370 Zea mays HOM05D000319 ORTHO05D005616 1.7e-52 209.9 247 47.8
Os05g0509200 Oryza sativa ssp. japonica HOM05D000319 ORTHO05D005616 2.9e-52 209.1 246 47.2
BcaB05g23646 Brassica carinata HOM05D000319 ORTHO05D005616 1.2e-50 203.8 268 48.9
HPP92_010274 Vanilla planifolia HOM05D000319 ORTHO05D005616 3.0e-49 199.1 207 54.6
AagrBONN_evm.TU.Sc2ySwM_368.222 Anthoceros agrestis HOM05D000319 ORTHO05D005616 1.1e-48 197.2 242 46.7
SMO361G0598 Selaginella moellendorffii HOM05D000319 ORTHO05D005616 1.5e-48 196.8 268 45.5
HanXRQChr01g0006871 Helianthus annuus HOM05D000319 ORTHO05D005616 7.3e-48 194.5 280 45.7
Mapoly0103s0061 Marchantia polymorpha HOM05D000319 ORTHO05D005616 8.1e-47 191.0 266 44.0
Pp3c2_9810 Physcomitrium patens HOM05D000319 ORTHO05D005616 2.0e-45 186.4 244 45.5
Pp3c2_9813 Physcomitrium patens HOM05D000319 ORTHO05D005616 2.0e-45 186.4 244 45.5
Pp3c14_11220 Physcomitrium patens HOM05D000319 ORTHO05D005616 3.4e-45 185.7 241 44.4
Dinv22483 Davidia involucrata HOM05D000319 ORTHO05D005616 1.7e-44 183.3 133 72.9
Lalb_Chr24g0395411 Lupinus albus HOM05D000319 ORTHO05D005616 5.5e-43 178.3 132 72.7
SEGI_22234 Sequoiadendron giganteum HOM05D000319 ORTHO05D005616 1.8e-41 173.3 213 47.4
BolC2t09938H Brassica oleracea HOM05D000319 ORTHO05D005616 6.7e-41 171.4 222 50.0
CBR_g10938 Chara braunii HOM05D000319 ORTHO05D005616 6.7e-41 171.4 258 41.9
CBR_g36360 Chara braunii HOM05D000319 ORTHO05D005616 2.1e-39 166.4 258 41.1
Duzib133G0192 Durio zibethinus HOM05D000319 ORTHO05D005616 1.1e-35 154.1 268 39.9
Oeu058801.1 Olea europaea HOM05D000113 ORTHO05D010194 3.2e-35 152.5 94 78.7
Sabra05G0167100 Salix brachista HOM05D000319 ORTHO05D005616 7.1e-35 151.4 332 35.8
QL03p046047 Quercus lobata HOM05D000319 ORTHO05D005616 7.4e-32 141.4 111 67.6
BcaC03g16149 Brassica carinata HOM05D000319 ORTHO05D005616 2.4e-30 136.3 179 49.2
Oeu002275.1 Olea europaea HOM05D000319 ORTHO05D005616 1.2e-29 134.0 111 64.0
PRCOL_00000415 Prasinoderma coloniale HOM05D000319 ORTHO05D005616 5.9e-29 131.7 262 34.7
Cre10.g450400 Chlamydomonas reinhardtii HOM05D000319 ORTHO05D005616 1.3e-25 120.6 288 30.9
Peaxi162Scf00049g02221 Petunia axillaris HOM05D000319 ORTHO05D005616 1.3e-25 120.6 80 80.0
Oeu058799.1 Olea europaea HOM05D000319 ORTHO05D005616 1.8e-25 120.2 163 44.8
Carub.0006s0058 Capsella rubella HOM05D000319 ORTHO05D005616 3.0e-25 119.4 145 54.5
CAN.G2529.1 Capsicum annuum HOM05D000319 ORTHO05D005616 3.3e-24 115.9 80 75.0
Psat5g267520 Pisum sativum HOM05D000319 ORTHO05D005616 1.1e-22 110.9 56 91.1
QL03p046056 Quercus lobata HOM05D000319 ORTHO05D005616 1.8e-22 110.2 160 43.1
Lalb_Chr24g0395401 Lupinus albus HOM05D000319 ORTHO05D005616 2.4e-22 109.8 58 84.5
Solyc09g065830.4 Solanum lycopersicum HOM05D000319 ORTHO05D005616 9.0e-22 107.8 159 42.8
HPP92_010181 Vanilla planifolia HOM05D000319 ORTHO05D005616 1.3e-20 104.0 85 67.1
Cfa025181 Carpinus fangiana HOM05D000319 ORTHO05D005616 4.2e-19 99.0 111 45.0
SGA_v2.0_scaffold580G53039 Striga asiatica HOM05D000319 ORTHO05D005616 3.0e-17 92.8 159 41.5
C02p39270 Brassica napus HOM05D000319 ORTHO05D021913 1.1e-16 90.9 56 80.4
Haze_26296 Corylus avellana HOM05D000319 ORTHO05D005616 3.1e-14 82.8 197 31.0
Lj1A57T51 Lonicera japonica HOM05D000319 ORTHO05D005616 1.7e-12 77.0 73 57.5
Lj1A57T50 Lonicera japonica HOM05D000319 ORTHO05D005616 3.0e-09 66.2 58 58.6
GSVIVG01013142001 Vitis vinifera HOM05D000319 ORTHO05D439463 4.8e-07 58.9 55 58.2
arahy.Tifrunner.gnm1.ann1.52VWXA Arachis hypogaea HOM05D000069 ORTHO05D086405 1.8e-06 57.0 29 93.1


User provided reference genes

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