Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G4552 Fragaria x ananassa HOM05D003950 ORTHO05D004697 5.9e-106 387.5 191 100.0
COL.COLO4_28614 Corchorus olitorius HOM05D003950 ORTHO05D004697 6.7e-33 144.8 200 47.0
FvH4_6g31590 Fragaria vesca HOM05D003950 ORTHO05D004697 6.7e-33 144.8 105 74.3
Atru.chr2.1469 Acer truncatum HOM05D003950 ORTHO05D004697 3.3e-32 142.5 199 46.2
Ciclev10021370m.g Citrus clementina HOM05D003950 ORTHO05D004697 3.3e-32 142.5 198 44.9
Glyma.05G089400 Glycine max HOM05D003950 ORTHO05D004697 7.4e-32 141.4 198 47.0
Gohir.A13G164200 Gossypium hirsutum HOM05D003950 ORTHO05D004697 7.4e-32 141.4 197 45.7
Thecc.05G244400 Theobroma cacao HOM05D003950 ORTHO05D004697 9.7e-32 141.0 200 46.5
CiPaw.10G125600 Carya illinoinensis HOM05D003950 ORTHO05D004697 1.3e-31 140.6 198 47.5
Gorai.004G251700 Gossypium raimondii HOM05D003950 ORTHO05D004697 2.2e-31 139.8 200 46.0
THA.LOC104821454 Tarenaya hassleriana HOM05D003950 ORTHO05D004697 2.8e-31 139.4 199 45.2
Ca_25687_v3 Cicer arietinum L. HOM05D003950 ORTHO05D004697 6.3e-31 138.3 198 45.5
Sed0018840 Sechium edule HOM05D003950 ORTHO05D004697 6.3e-31 138.3 197 45.7
Gohir.D08G236500 Gossypium hirsutum HOM05D003950 ORTHO05D004697 8.2e-31 137.9 197 45.7
Actinidia37803 Actinidia chinensis HOM05D003950 ORTHO05D004697 1.1e-30 137.5 193 47.7
FvH4_1g28440 Fragaria vesca HOM05D003950 ORTHO05D004697 1.1e-30 137.5 199 45.2
TWI60G1471 Tripterygium wilfordii HOM05D003950 ORTHO05D004697 1.4e-30 137.1 200 45.5
RcHm_v2.0_Chr5g0074451 Rosa chinensis HOM05D003950 ORTHO05D004697 1.8e-30 136.7 185 46.5
CAN.G959.52 Capsicum annuum HOM05D003950 ORTHO05D004697 2.4e-30 136.3 201 43.8
Hma1.2p1_2382F.1_g321070 Hydrangea macrophylla HOM05D003950 ORTHO05D004697 2.4e-30 136.3 194 47.9
Rhsim03G0052400 Rhododendron simsii HOM05D003950 ORTHO05D004697 2.4e-30 136.3 193 46.1
Actinidia03936 Actinidia chinensis HOM05D003950 ORTHO05D004697 4.1e-30 135.6 192 46.4
Dinv25063 Davidia involucrata HOM05D003950 ORTHO05D004697 4.1e-30 135.6 196 45.9
Psat1g090600 Pisum sativum HOM05D003950 ORTHO05D004697 5.3e-30 135.2 198 44.4
Solyc10g076860.2 Solanum lycopersicum HOM05D003950 ORTHO05D004697 6.9e-30 134.8 194 44.3
Medtr6g027790 Medicago truncatula HOM05D003950 ORTHO05D004697 9.1e-30 134.4 198 44.4
Sopen10g028540 Solanum pennellii HOM05D003950 ORTHO05D004697 9.1e-30 134.4 194 44.3
ClCG04G005440 Citrullus lanatus HOM05D003950 ORTHO05D004697 1.2e-29 134.0 194 44.8
MD12G1008500 Malus domestica HOM05D003950 ORTHO05D004697 1.2e-29 134.0 197 45.7
RcHm_v2.0_Chr3g0496431 Rosa chinensis HOM05D003950 ORTHO05D004697 1.2e-29 134.0 195 46.2
Hund15115 Selenicereus undatus HOM05D000185 ORTHO05D000105 1.2e-29 134.0 149 54.4
VMungo0464G0013 Vigna mungo HOM05D003950 ORTHO05D004697 1.2e-29 134.0 194 44.8
Gohir.A08G219600 Gossypium hirsutum HOM05D003950 ORTHO05D004697 1.5e-29 133.7 194 45.4
Eucgr.A02129 Eucalyptus grandis HOM05D003950 ORTHO05D004697 2.0e-29 133.3 203 42.9
PSO339G3097 Papaver somniferum HOM05D003950 ORTHO05D004697 2.6e-29 132.9 197 43.7
Cc06_g17190 Coffea canephora HOM05D003950 ORTHO05D004697 3.4e-29 132.5 194 45.9
Migut.J00770 Erythranthe guttata HOM05D003950 ORTHO05D004697 3.4e-29 132.5 192 44.3
MD03G1043800 Malus domestica HOM05D003950 ORTHO05D004697 5.9e-29 131.7 182 45.6
Haze_20442 Corylus avellana HOM05D003950 ORTHO05D004697 7.7e-29 131.3 193 46.6
CARHR268340 Cardamine hirsuta HOM05D003950 ORTHO05D004697 1.3e-28 130.6 194 44.3
Cfa017695 Carpinus fangiana HOM05D003950 ORTHO05D004697 1.3e-28 130.6 197 44.2
FvH4_3g41490 Fragaria vesca HOM05D003950 ORTHO05D004697 1.3e-28 130.6 165 50.3
DCAR_016963 Daucus carota HOM05D003950 ORTHO05D004697 1.7e-28 130.2 194 43.8
GSVIVG01029976001 Vitis vinifera HOM05D003950 ORTHO05D004697 1.7e-28 130.2 197 44.2
CsaV3_4G012140 Cucumis sativus L. HOM05D003950 ORTHO05D004697 2.9e-28 129.4 196 43.9
Phvul.004G074000 Phaseolus vulgaris HOM05D003950 ORTHO05D004697 2.9e-28 129.4 197 43.7
Potri.019G038400 Populus trichocarpa HOM05D003950 ORTHO05D004697 2.9e-28 129.4 194 43.3
arahy.Tifrunner.gnm1.ann1.DJK1GU Arachis hypogaea HOM05D003950 ORTHO05D004697 3.8e-28 129.0 202 44.6
ECA248G3680 Erigeron canadensis HOM05D003950 ORTHO05D004697 3.8e-28 129.0 195 43.6
FAN11G2374 Fragaria x ananassa HOM05D003950 ORTHO05D004697 3.8e-28 129.0 159 50.3
MSTRG.26559 Avicennia marina HOM05D003950 ORTHO05D004697 6.5e-28 128.3 196 44.4
CSS0049440 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 6.5e-28 128.3 193 44.6
MELO3C008816.2 Cucumis melo HOM05D003950 ORTHO05D004697 8.5e-28 127.9 196 43.4
FAN23G1412 Fragaria x ananassa HOM05D003950 ORTHO05D004697 1.4e-27 127.1 191 44.5
CANSAT78G2427 Cannabis sativa HOM05D003950 ORTHO05D004697 1.9e-27 126.7 197 42.6
FAN28G2715 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.5e-27 126.3 142 52.8
Lalb_Chr06g0174111 Lupinus albus HOM05D003950 ORTHO05D004697 2.5e-27 126.3 195 44.6
MD14G1005800 Malus domestica HOM05D003950 ORTHO05D004697 2.5e-27 126.3 142 54.2
ATR0697G272 Amborella trichopoda HOM05D003950 ORTHO05D004697 4.2e-27 125.6 172 47.7
MD03G1044000 Malus domestica HOM05D003950 ORTHO05D004697 4.2e-27 125.6 148 49.3
Sc07g0007800 Simmondsia chinensis HOM05D003950 ORTHO05D004697 4.2e-27 125.6 140 55.0
QL07p017761 Quercus lobata HOM05D003950 ORTHO05D004697 5.5e-27 125.2 183 45.4
EL10Ac1g01242 Beta vulgaris HOM05D003950 ORTHO05D004697 7.2e-27 124.8 139 52.5
Thhalv10014237m.g Eutrema salsugineum HOM05D003950 ORTHO05D004697 9.4e-27 124.4 190 44.2
HanXRQChr11g0347981 Helianthus annuus HOM05D003950 ORTHO05D004697 1.2e-26 124.0 190 43.7
MD11G1047200 Malus domestica HOM05D003950 ORTHO05D004697 1.2e-26 124.0 136 50.0
HanXRQChr01g0026431 Helianthus annuus HOM05D003950 ORTHO05D004697 1.6e-26 123.6 194 43.8
HanXRQChr11g0348201 Helianthus annuus HOM05D003950 ORTHO05D004697 1.6e-26 123.6 189 47.1
arahy.Tifrunner.gnm1.ann1.3ZLA4U Arachis hypogaea HOM05D001335 ORTHO05D001184 2.1e-26 123.2 204 43.6
CANSAT78G2379 Cannabis sativa HOM05D003950 ORTHO05D004697 2.1e-26 123.2 138 55.1
Lsat_1_v5_gn_1_56021 Lactuca sativa HOM05D003950 ORTHO05D004697 2.1e-26 123.2 207 44.0
MD03G1043900 Malus domestica HOM05D003950 ORTHO05D004697 2.1e-26 123.2 122 54.1
CDE07G1488 Ceratophyllum demersum HOM05D003950 ORTHO05D004697 2.7e-26 122.9 196 41.8
Gorai.013G195400 Gossypium raimondii HOM05D003950 ORTHO05D004697 2.7e-26 122.9 219 41.6
Os03g0157500 Oryza sativa ssp. japonica HOM05D003950 ORTHO05D004697 2.7e-26 122.9 144 51.4
SGA_v2.0_scaffold31G12791 Striga asiatica HOM05D003950 ORTHO05D004697 4.7e-26 122.1 212 40.6
SalBow3G0657 Salvia bowleyana HOM05D003950 ORTHO05D004697 6.1e-26 121.7 146 48.6
Sp6g16940 Schrenkiella parvula HOM05D003950 ORTHO05D004697 6.1e-26 121.7 194 43.8
TPR.G29869 Trifolium pratense HOM05D003950 ORTHO05D004697 6.1e-26 121.7 135 54.1
A03p14340 Brassica napus HOM05D003950 ORTHO05D004697 1.4e-25 120.6 191 42.9
BraA03t10731Z Brassica rapa HOM05D003950 ORTHO05D004697 1.4e-25 120.6 191 42.9
Zm00001eb403220 Zea mays HOM05D003950 ORTHO05D004697 1.8e-25 120.2 140 51.4
Nn6g32388 Nelumbo nucifera HOM05D003950 ORTHO05D004697 3.0e-25 119.4 128 56.2
Cpa.g.sc161.15 Carica papaya HOM05D003950 ORTHO05D004697 5.2e-25 118.6 138 51.4
BcaC01g06335 Brassica carinata HOM05D003950 ORTHO05D004697 6.7e-25 118.2 194 42.8
BolC3t14092H Brassica oleracea HOM05D003950 ORTHO05D004697 1.1e-24 117.5 191 42.4
Carub.0008s1529 Capsella rubella HOM05D003950 ORTHO05D004697 1.5e-24 117.1 188 42.0
AUR62027738 Chenopodium quinoa HOM05D003950 ORTHO05D004697 1.5e-24 117.1 127 55.1
Sabra19G0049600 Salix brachista HOM05D003950 ORTHO05D004697 1.5e-24 117.1 190 42.6
Nitab4.5_0002131g0010 Nicotiana tabacum HOM05D003950 ORTHO05D004697 2.6e-24 116.3 178 42.1
Potri.013G062500 Populus trichocarpa HOM05D003950 ORTHO05D004697 2.6e-24 116.3 194 42.3
C03p16720 Brassica napus HOM05D003950 ORTHO05D004697 3.3e-24 115.9 194 41.8
FvH4_3g41510 Fragaria vesca HOM05D003950 ORTHO05D004697 3.3e-24 115.9 132 56.1
AL8G30470 Arabidopsis lyrata HOM05D003950 ORTHO05D004697 4.4e-24 115.5 188 43.1
FAN11G3501 Fragaria x ananassa HOM05D003950 ORTHO05D004697 4.4e-24 115.5 172 46.5
FAN21G2807 Fragaria x ananassa HOM05D003950 ORTHO05D004697 4.4e-24 115.5 161 44.7
BcaC01g06337 Brassica carinata HOM05D003950 ORTHO05D004697 2.8e-23 112.8 137 50.4
FAN17G2887 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.8e-23 112.8 177 44.1
HanXRQChr11g0348221 Helianthus annuus HOM05D003950 ORTHO05D004697 2.8e-23 112.8 149 49.0
AT5G55000 Arabidopsis thaliana HOM05D003950 ORTHO05D004697 4.8e-23 112.1 132 52.3
FvH4_4g13720 Fragaria vesca HOM05D003950 ORTHO05D004697 4.8e-23 112.1 127 49.6
Gohir.D13G167037 Gossypium hirsutum HOM05D003950 ORTHO05D004697 4.8e-23 112.1 143 49.7
AagrBONN_evm.TU.Sc2ySwM_344.2926 Anthoceros agrestis HOM05D003950 ORTHO05D004697 6.3e-23 111.7 146 47.9
Aa31LG2G1860 Aethionema arabicum HOM05D003950 ORTHO05D004697 1.4e-22 110.5 129 53.5
Duzib177G0442 Durio zibethinus HOM05D003950 ORTHO05D004697 2.4e-22 109.8 147 44.9
Aqoxy1G00539 Aquilegia oxysepala HOM05D003950 ORTHO05D004697 3.1e-22 109.4 184 41.3
FAN25G1848 Fragaria x ananassa HOM05D003950 ORTHO05D004697 4.1e-22 109.0 101 57.4
AUR62018910 Chenopodium quinoa HOM05D003950 ORTHO05D004697 9.1e-22 107.8 166 44.6
PSO384G0364 Papaver somniferum HOM05D003950 ORTHO05D004697 1.6e-21 107.1 140 45.7
Nitab4.5_0000121g0060 Nicotiana tabacum HOM05D003950 ORTHO05D004697 2.0e-21 106.7 191 39.3
HPP92_027838 Vanilla planifolia HOM05D003950 ORTHO05D004697 2.0e-21 106.7 131 48.1
CDE06G0557 Ceratophyllum demersum HOM05D003950 ORTHO05D004697 2.6e-21 106.3 123 52.0
HanXRQChr11g0348211 Helianthus annuus HOM05D003950 ORTHO05D004697 4.5e-21 105.5 126 50.8
HanXRQChr11g0348521 Helianthus annuus HOM05D003950 ORTHO05D004697 5.9e-21 105.1 183 42.6
CSS0011085 Camellia sinensis var. sinensis HOM05D003950 ORTHO05D004697 7.7e-21 104.8 114 56.1
Pp3c19_3550 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.7e-20 103.6 146 42.5
Gohir.A08G219522 Gossypium hirsutum HOM05D003950 ORTHO05D004697 1.1e-19 100.9 171 42.7
Os10g0438000 Oryza sativa ssp. japonica HOM05D003950 ORTHO05D004697 1.1e-19 100.9 196 39.3
SMO239G0197 Selaginella moellendorffii HOM05D003950 ORTHO05D004697 1.1e-19 100.9 195 37.9
Prupe.6G036000 Prunus persica HOM05D003950 ORTHO05D004697 1.5e-19 100.5 151 45.0
unitig_899.g15193 Utricularia gibba HOM05D003950 ORTHO05D004697 1.5e-19 100.5 137 45.3
Manes.09G138000 Manihot esculenta HOM05D003950 ORTHO05D004697 7.2e-19 98.2 166 40.4
MD03G1047000 Malus domestica HOM05D003950 ORTHO05D004697 1.6e-18 97.1 144 45.8
FAN13G1636 Fragaria x ananassa HOM05D003950 ORTHO05D004697 2.7e-18 96.3 182 36.8
HanXRQChr11g0348261 Helianthus annuus HOM05D003950 ORTHO05D004697 1.0e-17 94.4 172 40.7
Lj1A1064G32 Lonicera japonica HOM05D003950 ORTHO05D004697 8.8e-17 91.3 206 34.5
Mapoly0001s0409 Marchantia polymorpha HOM05D003950 ORTHO05D004697 2.6e-16 89.7 137 41.6
FAN19G2544 Fragaria x ananassa HOM05D003950 ORTHO05D004697 3.3e-16 89.4 88 59.1
HanXRQChr11g0347961 Helianthus annuus HOM05D003950 ORTHO05D004697 4.8e-15 85.5 113 50.4
MSTRG.10428 Avicennia marina HOM05D003950 ORTHO05D004697 8.2e-15 84.7 163 40.5
vmacro07558 Vaccinium macrocarpon HOM05D003950 ORTHO05D004697 1.4e-14 84.0 160 36.9
HanXRQChr11g0347991 Helianthus annuus HOM05D003950 ORTHO05D004697 7.0e-14 81.6 113 46.0
Sabra13G0055700 Salix brachista HOM05D003950 ORTHO05D004697 7.0e-14 81.6 113 46.9
TAR623G1392 Trochodendron aralioides HOM05D003950 ORTHO05D004697 2.7e-13 79.7 136 39.7
HanXRQChr11g0347951 Helianthus annuus HOM05D003950 ORTHO05D004697 3.5e-13 79.3 118 47.5
RcHm_v2.0_Chr5g0074461 Rosa chinensis HOM05D003950 ORTHO05D004697 3.5e-13 79.3 92 50.0
Dinv05569 Davidia involucrata HOM05D003950 ORTHO05D004697 4.5e-13 79.0 136 40.4
Pp3c22_8540 Physcomitrium patens HOM05D003950 ORTHO05D004697 4.5e-13 79.0 108 42.6
arahy.Tifrunner.gnm1.ann1.NAY1Y6 Arachis hypogaea HOM05D003950 ORTHO05D004697 7.7e-13 78.2 86 54.7
arahy.Tifrunner.gnm1.ann1.Y4106G Arachis hypogaea HOM05D003950 ORTHO05D004697 1.0e-12 77.8 86 54.7
RcHm_v2.0_Chr5g0074441 Rosa chinensis HOM05D003950 ORTHO05D004697 1.3e-12 77.4 101 45.5
SEGI_22625 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 5.0e-12 75.5 90 51.1
HanXRQChr11g0347971 Helianthus annuus HOM05D003950 ORTHO05D004697 6.5e-12 75.1 115 47.0
arahy.Tifrunner.gnm1.ann1.045CRL Arachis hypogaea HOM05D003950 ORTHO05D004697 4.2e-11 72.4 96 47.9
MD03G1035600 Malus domestica HOM05D003950 ORTHO05D004697 9.4e-11 71.2 75 52.0
FAN14G0610 Fragaria x ananassa HOM05D003950 ORTHO05D202809 2.1e-10 70.1 45 77.8
FAN13G2987 Fragaria x ananassa HOM05D003950 ORTHO05D004697 8.0e-10 68.2 169 32.0
Pp3c22_8500 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.8e-09 67.0 106 40.6
SEGI_36015 Sequoiadendron giganteum HOM05D003950 ORTHO05D004697 2.3e-09 66.6 63 58.7
arahy.Tifrunner.gnm1.ann1.F7GYSS Arachis hypogaea HOM05D003950 ORTHO05D004697 5.2e-09 65.5 69 56.5
Prupe.7G009900 Prunus persica HOM05D003950 ORTHO05D004697 6.8e-09 65.1 77 51.9
FAN13G2151 Fragaria x ananassa HOM05D003950 ORTHO05D004697 8.8e-09 64.7 70 52.9
Pp3c19_20680 Physcomitrium patens HOM05D003950 ORTHO05D004697 1.2e-08 64.3 103 35.0
HanXRQChr11g0348281 Helianthus annuus HOM05D003950 ORTHO05D004697 4.4e-08 62.4 83 48.2
AUR62043941 Chenopodium quinoa HOM05D003950 ORTHO05D004697 1.7e-07 60.5 95 43.2
Pp3c22_3970 Physcomitrium patens HOM05D003950 ORTHO05D004697 6.3e-07 58.5 138 34.8
Pp3c22_8490 Physcomitrium patens HOM05D003950 ORTHO05D004697 8.3e-07 58.2 106 38.7


User provided reference genes

Program Settings