Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G4452 Fragaria x ananassa HOM05D000205 ORTHO05D010217 1.0e-41 172.9 84 100.0
FAN05G3269 Fragaria x ananassa HOM05D000205 ORTHO05D010217 2.1e-31 138.7 66 98.5
FvH4_6g05090 Fragaria vesca HOM05D000205 ORTHO05D000438 2.9e-20 101.7 87 62.1
FAN05G0164 Fragaria x ananassa HOM05D000205 ORTHO05D000438 2.9e-20 101.7 87 62.1
RcHm_v2.0_Chr3g0453571 Rosa chinensis HOM05D000205 ORTHO05D000438 8.3e-20 100.1 87 58.6
FvH4_6g05060 Fragaria vesca HOM05D000205 ORTHO05D000438 1.4e-19 99.4 87 59.8
RcHm_v2.0_Chr3g0453601 Rosa chinensis HOM05D000205 ORTHO05D000438 2.4e-19 98.6 87 58.6
FAN05G2081 Fragaria x ananassa HOM05D000205 ORTHO05D000438 1.3e-17 92.8 87 55.2
FAN05G3096 Fragaria x ananassa HOM05D000205 ORTHO05D000438 1.3e-17 92.8 87 55.2
FvH4_6g05111 Fragaria vesca HOM05D000205 ORTHO05D000438 3.9e-17 91.3 87 54.0
RcHm_v2.0_Chr3g0453621 Rosa chinensis HOM05D000205 ORTHO05D000438 3.3e-16 88.2 87 52.9
RcHm_v2.0_Chr3g0453651 Rosa chinensis HOM05D000205 ORTHO05D000438 3.3e-16 88.2 87 51.7
RcHm_v2.0_Chr3g0453561 Rosa chinensis HOM05D000205 ORTHO05D000438 1.6e-15 85.9 87 52.9
FvH4_6g05051 Fragaria vesca HOM05D000205 ORTHO05D000438 2.1e-15 85.5 87 49.4
FAN14G1576 Fragaria x ananassa HOM05D000205 ORTHO05D000438 4.7e-15 84.3 93 46.2
FAN14G2687 Fragaria x ananassa HOM05D000205 ORTHO05D000438 1.1e-14 83.2 93 46.2
QL03p003894 Quercus lobata HOM05D000205 ORTHO05D000438 1.4e-14 82.8 91 46.2
RcHm_v2.0_Chr3g0453541 Rosa chinensis HOM05D000205 ORTHO05D000438 1.4e-14 82.8 87 48.3
RcHm_v2.0_Chr3g0453551 Rosa chinensis HOM05D000205 ORTHO05D000438 1.4e-14 82.8 86 50.0
FvH4_6g05120 Fragaria vesca HOM05D000205 ORTHO05D000438 5.2e-14 80.9 87 49.4
FAN14G3511 Fragaria x ananassa HOM05D000205 ORTHO05D000438 5.2e-14 80.9 87 49.4
MD12G1226400 Malus domestica HOM05D000205 ORTHO05D000438 5.2e-14 80.9 87 49.4
FAN03G1587 Fragaria x ananassa HOM05D000205 ORTHO05D000438 8.9e-14 80.1 87 47.1
FAN20G1622 Fragaria x ananassa HOM05D000205 ORTHO05D000438 8.9e-14 80.1 87 47.1
PGR083G0279 Punica granatum HOM05D000205 ORTHO05D000438 8.9e-14 80.1 87 46.0
FvH4_6g05092 Fragaria vesca HOM05D000205 ORTHO05D000438 1.5e-13 79.3 82 50.0
FvH4_6g05050 Fragaria vesca HOM05D000205 ORTHO05D000438 2.6e-13 78.6 86 47.7
FAN14G0109 Fragaria x ananassa HOM05D000205 ORTHO05D000438 2.6e-13 78.6 86 47.7
FAN14G1503 Fragaria x ananassa HOM05D000205 ORTHO05D000438 2.6e-13 78.6 86 47.7
FAN05G4776 Fragaria x ananassa HOM05D000205 ORTHO05D000438 3.4e-13 78.2 87 51.7
Eucgr.D01063 Eucalyptus grandis HOM05D000205 ORTHO05D000438 4.4e-13 77.8 87 43.7
Eucgr.D01065 Eucalyptus grandis HOM05D000205 ORTHO05D000438 4.4e-13 77.8 87 43.7
FAN09G0417 Fragaria x ananassa HOM05D000205 ORTHO05D010217 5.8e-13 77.4 59 66.1
Eucgr.B02024 Eucalyptus grandis HOM05D000205 ORTHO05D000438 7.6e-13 77.0 87 43.7
QL03p003883 Quercus lobata HOM05D000205 ORTHO05D000438 1.3e-12 76.3 87 44.8
FvH4_6g05091 Fragaria vesca HOM05D000205 ORTHO05D000438 1.7e-12 75.9 73 57.5
PGR083G0524 Punica granatum HOM05D000205 ORTHO05D000438 1.7e-12 75.9 91 41.8
GSVIVG01022030001 Vitis vinifera HOM05D000205 ORTHO05D000438 1.7e-12 75.9 87 44.8
GSVIVG01023340001 Vitis vinifera HOM05D000205 ORTHO05D010070 2.2e-12 75.5 87 44.8
CiPaw.07G013600 Carya illinoinensis HOM05D000205 ORTHO05D000438 2.9e-12 75.1 87 46.0
Eucgr.D01066 Eucalyptus grandis HOM05D000205 ORTHO05D000438 8.4e-12 73.6 87 42.5
FvH4_6g05021 Fragaria vesca HOM05D000205 ORTHO05D000438 8.4e-12 73.6 84 46.4
Eucgr.B02021 Eucalyptus grandis HOM05D000205 ORTHO05D000438 1.1e-11 73.2 87 41.4
QL03p003937 Quercus lobata HOM05D000205 ORTHO05D018832 1.1e-11 73.2 87 46.0
Cfa006528 Carpinus fangiana HOM05D000205 ORTHO05D000438 1.4e-11 72.8 88 44.3
Eucgr.B02019 Eucalyptus grandis HOM05D000205 ORTHO05D000438 1.4e-11 72.8 87 41.4
Eucgr.B02020 Eucalyptus grandis HOM05D000205 ORTHO05D000438 1.9e-11 72.4 87 41.4
MD12G1225600 Malus domestica HOM05D000205 ORTHO05D000438 1.9e-11 72.4 87 43.7
PGR083G1991 Punica granatum HOM05D000205 ORTHO05D000438 1.9e-11 72.4 87 43.7
QL03p003906 Quercus lobata HOM05D000205 ORTHO05D000438 1.9e-11 72.4 87 46.0
GSVIVG01022032001 Vitis vinifera HOM05D000205 ORTHO05D000438 1.9e-11 72.4 87 44.8
MD12G1225900 Malus domestica HOM05D000205 ORTHO05D000438 2.4e-11 72.0 87 43.7
Eucgr.B02017 Eucalyptus grandis HOM05D000205 ORTHO05D000438 9.2e-11 70.1 87 39.1
Eucgr.B02026 Eucalyptus grandis HOM05D000205 ORTHO05D000438 9.2e-11 70.1 87 42.5
GSVIVG01022033001 Vitis vinifera HOM05D000205 ORTHO05D000438 9.2e-11 70.1 88 44.3
Cfa006530 Carpinus fangiana HOM05D000205 ORTHO05D123964 1.2e-10 69.7 87 43.7
Eucgr.B02023 Eucalyptus grandis HOM05D000205 ORTHO05D000438 1.2e-10 69.7 87 41.4
QL03p004128 Quercus lobata HOM05D000205 ORTHO05D000438 1.2e-10 69.7 87 40.2
GSVIVG01022024001 Vitis vinifera HOM05D000205 ORTHO05D000438 1.2e-10 69.7 87 39.1
Atru.chr1.3255 Acer truncatum HOM05D000205 ORTHO05D000438 1.6e-10 69.3 87 48.3
Eucgr.B02015 Eucalyptus grandis HOM05D000205 ORTHO05D000438 1.6e-10 69.3 87 37.9
FAN02G0772 Fragaria x ananassa HOM05D000205 ORTHO05D000438 2.1e-10 68.9 79 44.3
Eucgr.B02016 Eucalyptus grandis HOM05D000205 ORTHO05D000438 2.7e-10 68.6 87 39.1
CiPaw.07G035000 Carya illinoinensis HOM05D000205 ORTHO05D000438 3.5e-10 68.2 86 40.7
CANSAT54G0798 Cannabis sativa HOM05D000205 ORTHO05D000438 6.0e-10 67.4 87 47.1
QL03p003982 Quercus lobata HOM05D000205 ORTHO05D000438 6.0e-10 67.4 87 41.4
GSVIVG01022025001 Vitis vinifera HOM05D000205 ORTHO05D000438 6.0e-10 67.4 87 39.1
GSVIVG01022035001 Vitis vinifera HOM05D000205 ORTHO05D000438 6.0e-10 67.4 87 39.1
CSS0037127 Camellia sinensis var. sinensis HOM05D000205 ORTHO05D000438 1.0e-09 66.6 87 39.1
CSS0000054 Camellia sinensis var. sinensis HOM05D000205 ORTHO05D000438 1.3e-09 66.2 87 37.9
CSS0034914 Camellia sinensis var. sinensis HOM05D000205 ORTHO05D000438 1.3e-09 66.2 87 37.9
Duzib177G0103 Durio zibethinus HOM05D000205 ORTHO05D000438 1.3e-09 66.2 87 42.5
FvH4_6g05130 Fragaria vesca HOM05D000205 ORTHO05D000438 1.3e-09 66.2 87 39.1
QL03p003929 Quercus lobata HOM05D000205 ORTHO05D000438 1.3e-09 66.2 87 43.7
GSVIVG01022031001 Vitis vinifera HOM05D000205 ORTHO05D000438 1.3e-09 66.2 87 42.5
CANSAT54G1961 Cannabis sativa HOM05D000205 ORTHO05D000438 1.7e-09 65.9 87 41.4
Hma1.2p1_0958F.1_g241450 Hydrangea macrophylla HOM05D000205 ORTHO05D000438 1.7e-09 65.9 87 39.1
Manes.08G124100 Manihot esculenta HOM05D000205 ORTHO05D000438 1.7e-09 65.9 87 43.7
GSVIVG01022026001 Vitis vinifera HOM05D000205 ORTHO05D000438 1.7e-09 65.9 87 42.5
Gohir.A11G262200 Gossypium hirsutum HOM05D000205 ORTHO05D000438 2.3e-09 65.5 87 41.4
Gorai.007G293200 Gossypium raimondii HOM05D000205 ORTHO05D000438 2.3e-09 65.5 87 41.4
Cpa.g.sc48.2 Carica papaya HOM05D000205 ORTHO05D000438 3.0e-09 65.1 87 41.4
AT5G27360 Arabidopsis thaliana HOM05D000205 ORTHO05D000438 3.9e-09 64.7 87 40.2
Gohir.D11G272200 Gossypium hirsutum HOM05D000205 ORTHO05D000438 3.9e-09 64.7 87 41.4
Dinv22912 Davidia involucrata HOM05D000205 ORTHO05D000438 5.1e-09 64.3 87 43.7
RcHm_v2.0_Chr3g0453671 Rosa chinensis HOM05D000205 ORTHO05D000438 5.1e-09 64.3 87 36.8
Actinidia05731 Actinidia chinensis HOM05D000205 ORTHO05D000438 6.6e-09 63.9 87 35.6
TWI56G0605 Tripterygium wilfordii HOM05D000205 ORTHO05D000438 6.6e-09 63.9 87 40.2
CiPaw.08G167700 Carya illinoinensis HOM05D000205 ORTHO05D000438 1.1e-08 63.2 87 40.2
MD12G1225300 Malus domestica HOM05D000205 ORTHO05D000438 1.1e-08 63.2 87 34.5
THA.LOC104805853 Tarenaya hassleriana HOM05D000205 ORTHO05D000438 1.1e-08 63.2 87 37.9
Aa31LG11G9090 Aethionema arabicum HOM05D000205 ORTHO05D000438 1.5e-08 62.8 91 35.2
BcaC03g17779 Brassica carinata HOM05D000205 ORTHO05D000438 1.5e-08 62.8 87 40.2
CANSAT78G0937 Cannabis sativa HOM05D000205 ORTHO05D000438 1.5e-08 62.8 89 42.7
Dinv40244 Davidia involucrata HOM05D000205 ORTHO05D000438 1.5e-08 62.8 87 39.1
Phvul.006G095200 Phaseolus vulgaris HOM05D000205 ORTHO05D000438 1.9e-08 62.4 87 36.8
VMungo0540G0806 Vigna mungo HOM05D000205 ORTHO05D000438 1.9e-08 62.4 87 36.8
CiPaw.07G013700 Carya illinoinensis HOM05D000205 ORTHO05D000438 2.5e-08 62.0 85 42.4
Dinv40242 Davidia involucrata HOM05D000205 ORTHO05D000438 2.5e-08 62.0 87 35.6
Thecc.05G299300 Theobroma cacao HOM05D000205 ORTHO05D000438 2.5e-08 62.0 87 41.4
COL.COLO4_11360 Corchorus olitorius HOM05D000205 ORTHO05D000438 3.3e-08 61.6 87 35.6
Dinv22911 Davidia involucrata HOM05D000205 ORTHO05D000438 3.3e-08 61.6 86 41.9
Duzib177G1100 Durio zibethinus HOM05D000205 ORTHO05D000438 3.3e-08 61.6 87 37.9
Prupe.6G331800 Prunus persica HOM05D000205 ORTHO05D000438 3.3e-08 61.6 87 35.6
Ciclev10001032m.g Citrus clementina HOM05D000205 ORTHO05D000438 4.3e-08 61.2 87 42.5
Dinv22909 Davidia involucrata HOM05D000205 ORTHO05D000438 4.3e-08 61.2 88 43.2
vmacro05042 Vaccinium macrocarpon HOM05D000205 ORTHO05D000438 5.6e-08 60.8 87 35.6
Actinidia23603 Actinidia chinensis HOM05D000205 ORTHO05D003784 7.3e-08 60.5 87 35.6
Aa31LG5G15530 Aethionema arabicum HOM05D000205 ORTHO05D000438 7.3e-08 60.5 87 39.1
arahy.Tifrunner.gnm1.ann1.G5D4VZ Arachis hypogaea HOM05D000205 ORTHO05D000438 7.3e-08 60.5 87 36.8
BcaNung02473 Brassica carinata HOM05D000205 ORTHO05D000438 7.3e-08 60.5 87 39.1
COL.COLO4_21394 Corchorus olitorius HOM05D000205 ORTHO05D000438 7.3e-08 60.5 87 34.5
Dinv40239 Davidia involucrata HOM05D000205 ORTHO05D000438 7.3e-08 60.5 87 39.1
GSVIVG01022034001 Vitis vinifera HOM05D000205 ORTHO05D000438 7.3e-08 60.5 87 35.6
BcaNung04362 Brassica carinata HOM05D000205 ORTHO05D000438 9.6e-08 60.1 87 39.1
HanXRQChr05g0158821 Helianthus annuus HOM05D000205 ORTHO05D000438 9.6e-08 60.1 87 36.8
Sp2g20560 Schrenkiella parvula HOM05D000205 ORTHO05D000438 9.6e-08 60.1 87 39.1
PGSC0003DMG400006636 Solanum tuberosum HOM05D000205 ORTHO05D000438 9.6e-08 60.1 87 40.2
Atru.chr2.517 Acer truncatum HOM05D000205 ORTHO05D000438 1.2e-07 59.7 87 41.4
BcaC05g30173 Brassica carinata HOM05D000205 ORTHO05D000438 1.2e-07 59.7 87 39.1
Potri.005G039900 Populus trichocarpa HOM05D000205 ORTHO05D000438 1.2e-07 59.7 87 39.1
VMungo0540G0255 Vigna mungo HOM05D000205 ORTHO05D000438 1.2e-07 59.7 87 35.6
Aa31LG11G9130 Aethionema arabicum HOM05D000205 ORTHO05D000438 1.6e-07 59.3 87 36.8
Carub.0006s2520 Capsella rubella HOM05D000205 ORTHO05D000438 1.6e-07 59.3 87 37.9
PGR083G1419 Punica granatum HOM05D000205 ORTHO05D000438 1.6e-07 59.3 86 36.0
AT3G05160 Arabidopsis thaliana HOM05D000205 ORTHO05D000438 2.1e-07 58.9 87 35.6
AT5G27350 Arabidopsis thaliana HOM05D000205 ORTHO05D000438 2.1e-07 58.9 87 37.9
BcaB07g34193 Brassica carinata HOM05D000205 ORTHO05D000438 2.1e-07 58.9 87 37.9
Ah.06g190210 Amaranthus hybridus HOM05D000205 ORTHO05D000438 2.8e-07 58.5 87 34.5
CARHR079490 Cardamine hirsuta HOM05D000205 ORTHO05D000438 2.8e-07 58.5 87 36.8
Nitab4.5_0001423g0100 Nicotiana tabacum HOM05D000205 ORTHO05D000438 2.8e-07 58.5 86 38.4
AL6G39700 Arabidopsis lyrata HOM05D000205 ORTHO05D000438 3.6e-07 58.2 87 37.9
Carub.0006s2519 Capsella rubella HOM05D000205 ORTHO05D000438 3.6e-07 58.2 87 35.6
AUR62005125 Chenopodium quinoa HOM05D000205 ORTHO05D044050 3.6e-07 58.2 87 36.8
Medtr7g113970 Medicago truncatula HOM05D000205 ORTHO05D000438 3.6e-07 58.2 87 35.6
Peaxi162Scf00185g00210 Petunia axillaris HOM05D000205 ORTHO05D000438 3.6e-07 58.2 87 39.1
Psat3g009560 Pisum sativum HOM05D000205 ORTHO05D000438 3.6e-07 58.2 87 35.6
PGR031G1752 Punica granatum HOM05D000205 ORTHO05D000438 3.6e-07 58.2 80 42.5
Rhsim07G0178700 Rhododendron simsii HOM05D000205 ORTHO05D000438 4.7e-07 57.8 87 35.6
THA.LOC104818673 Tarenaya hassleriana HOM05D000205 ORTHO05D000438 4.7e-07 57.8 87 34.5
Ca_09382_v3 Cicer arietinum L. HOM05D000205 ORTHO05D000438 6.2e-07 57.4 87 35.6
Hma1.2p1_0617F.1_g190080 Hydrangea macrophylla HOM05D000205 ORTHO05D000438 6.2e-07 57.4 87 40.2
Nn3g21202 Nelumbo nucifera HOM05D000205 ORTHO05D000438 6.2e-07 57.4 87 36.8
QL03p003869 Quercus lobata HOM05D000205 ORTHO05D000438 6.2e-07 57.4 87 34.5
Sp3g04010 Schrenkiella parvula HOM05D000205 ORTHO05D000438 6.2e-07 57.4 87 37.9
CARHR079500 Cardamine hirsuta HOM05D000205 ORTHO05D000438 8.1e-07 57.0 87 35.6
COL.COLO4_13542 Corchorus olitorius HOM05D000205 ORTHO05D000438 8.1e-07 57.0 87 35.6
Thhalv10020670m.g Eutrema salsugineum HOM05D000205 ORTHO05D000438 8.1e-07 57.0 87 39.1
Glyma.03G241500 Glycine max HOM05D000205 ORTHO05D000438 8.1e-07 57.0 87 34.5
Gohir.D11G272100 Gossypium hirsutum HOM05D000205 ORTHO05D000438 8.1e-07 57.0 87 36.8
Gorai.007G293100 Gossypium raimondii HOM05D000205 ORTHO05D000438 8.1e-07 57.0 87 36.8
Lj1g0023795 Lotus japonicus HOM05D000205 ORTHO05D000438 8.1e-07 57.0 87 35.6
PSO170G0534 Papaver somniferum HOM05D000205 ORTHO05D000438 8.1e-07 57.0 87 40.2
QL03p003796 Quercus lobata HOM05D000205 ORTHO05D010217 8.1e-07 57.0 87 33.3
THA.LOC104821012 Tarenaya hassleriana HOM05D000205 ORTHO05D000438 8.1e-07 57.0 87 33.3
Glyma.19G239000 Glycine max HOM05D000205 ORTHO05D000438 1.1e-06 56.6 87 34.5
Nitab4.5_0002848g0070 Nicotiana tabacum HOM05D000205 ORTHO05D000438 1.1e-06 56.6 86 37.2
PGSC0003DMG400028567 Solanum tuberosum HOM05D000205 ORTHO05D000438 1.1e-06 56.6 86 37.2
TPR.G21788 Trifolium pratense HOM05D000205 ORTHO05D000438 1.1e-06 56.6 87 34.5
AT3G05165 Arabidopsis thaliana HOM05D000205 ORTHO05D000438 1.4e-06 56.2 87 35.6
CAN.G1134.2 Capsicum annuum HOM05D000205 ORTHO05D000438 1.4e-06 56.2 86 37.2
COL.COLO4_13541 Corchorus olitorius HOM05D000205 ORTHO05D000438 1.4e-06 56.2 86 37.2
Gohir.A11G262100 Gossypium hirsutum HOM05D000205 ORTHO05D000438 1.4e-06 56.2 87 34.5
Solyc01g098560.3 Solanum lycopersicum HOM05D000205 ORTHO05D000438 1.4e-06 56.2 86 37.2
Sopen01g042120 Solanum pennellii HOM05D000205 ORTHO05D000438 1.4e-06 56.2 86 37.2
THA.LOC104821045 Tarenaya hassleriana HOM05D000205 ORTHO05D000438 1.4e-06 56.2 87 32.2
Carub.0003s0441 Capsella rubella HOM05D000205 ORTHO05D000438 1.8e-06 55.8 87 36.8
CiPaw.07G013500 Carya illinoinensis HOM05D000205 ORTHO05D000438 1.8e-06 55.8 87 29.9
MELO3C015350.2 Cucumis melo HOM05D000205 ORTHO05D000438 1.8e-06 55.8 87 33.3
Peaxi162Scf00434g00510 Petunia axillaris HOM05D000205 ORTHO05D000438 1.8e-06 55.8 86 37.2
Phvul.006G095600 Phaseolus vulgaris HOM05D000205 ORTHO05D000438 1.8e-06 55.8 87 33.3
AT1G54730 Arabidopsis thaliana HOM05D000205 ORTHO05D000438 2.4e-06 55.5 93 38.7
TWI56G0351 Tripterygium wilfordii HOM05D000205 ORTHO05D000438 2.4e-06 55.5 87 35.6
A02p38560 Brassica napus HOM05D000205 ORTHO05D000438 3.1e-06 55.1 87 35.6
Cpa.g.sc1088.3 Carica papaya HOM05D000205 ORTHO05D000438 4.0e-06 54.7 87 31.0
Dinv22913 Davidia involucrata HOM05D000205 ORTHO05D000438 4.0e-06 54.7 63 47.6
ClCG03G016720 Citrullus lanatus HOM05D000205 ORTHO05D000438 5.2e-06 54.3 87 32.2
Oeu013218.1 Olea europaea HOM05D000205 ORTHO05D000438 5.2e-06 54.3 86 37.2
CiPaw.07G013300 Carya illinoinensis HOM05D000205 ORTHO05D000438 6.9e-06 53.9 87 28.7
THA.LOC104824561 Tarenaya hassleriana HOM05D000205 ORTHO05D000438 6.9e-06 53.9 87 31.0
BcaC05g30005 Brassica carinata HOM05D000205 ORTHO05D000438 9.0e-06 53.5 87 35.6
A05p42410 Brassica napus HOM05D000205 ORTHO05D000438 9.0e-06 53.5 87 35.6
C05p62030 Brassica napus HOM05D000205 ORTHO05D000438 9.0e-06 53.5 87 35.6
BolC5t34863H Brassica oleracea HOM05D000205 ORTHO05D000438 9.0e-06 53.5 87 35.6
BraA05t23011Z Brassica rapa HOM05D000205 ORTHO05D000438 9.0e-06 53.5 87 35.6
Zm00001eb333940 Zea mays HOM05D000205 ORTHO05D000438 9.0e-06 53.5 87 34.5


User provided reference genes

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