Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G3971 Fragaria x ananassa HOM05D001415 ORTHO05D001075 5.1e-78 294.3 142 100.0
FAN14G2263 Fragaria x ananassa HOM05D001415 ORTHO05D001075 8.5e-33 144.1 122 62.3
RcHm_v2.0_Chr3g0470051 Rosa chinensis HOM05D001415 ORTHO05D001075 1.1e-24 117.1 67 86.6
MD04G1094700 Malus domestica HOM05D001415 ORTHO05D001075 9.5e-16 87.4 75 58.7
Manes.08G009400 Manihot esculenta HOM05D001415 ORTHO05D001075 3.0e-14 82.4 44 77.3
CiPaw.10G130800 Carya illinoinensis HOM05D001415 ORTHO05D001075 4.0e-14 82.0 54 70.4
Lalb_Chr01g0018721 Lupinus albus HOM05D001415 ORTHO05D001075 4.0e-14 82.0 50 72.0
Lalb_Chr25g0289021 Lupinus albus HOM05D001415 ORTHO05D001075 8.9e-14 80.9 37 89.2
Manes.09G067380 Manihot esculenta HOM05D001415 ORTHO05D001075 8.9e-14 80.9 49 73.5
Aa31LG5G22210 Aethionema arabicum HOM05D001415 ORTHO05D001075 1.2e-13 80.5 40 80.0
Potri.006G125600 Populus trichocarpa HOM05D001415 ORTHO05D001075 1.2e-13 80.5 52 71.2
MD12G1114900 Malus domestica HOM05D001415 ORTHO05D001075 2.0e-13 79.7 68 61.8
Phvul.001G178700 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 2.0e-13 79.7 37 86.5
AT2G36985 Arabidopsis thaliana HOM05D001415 ORTHO05D001075 2.6e-13 79.3 40 77.5
Medtr7g101850 Medicago truncatula HOM05D001415 ORTHO05D001075 2.6e-13 79.3 64 62.5
COL.COLO4_26977 Corchorus olitorius HOM05D001415 ORTHO05D001075 3.4e-13 79.0 52 67.3
Duzib128G1683 Durio zibethinus HOM05D001415 ORTHO05D001075 3.4e-13 79.0 52 65.4
Glyma.19G183200 Glycine max HOM05D001415 ORTHO05D001075 3.4e-13 79.0 37 83.8
Gohir.D09G143600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 5.7e-13 78.2 53 67.9
Gorai.006G164900 Gossypium raimondii HOM05D001415 ORTHO05D001075 5.7e-13 78.2 53 67.9
Psat3g042400 Pisum sativum HOM05D001415 ORTHO05D001075 5.7e-13 78.2 38 84.2
TPR.G9363 Trifolium pratense HOM05D001415 ORTHO05D001075 5.7e-13 78.2 38 84.2
Glyma.10G057200 Glycine max HOM05D001415 ORTHO05D001075 7.5e-13 77.8 53 64.2
Lj1g0014030 Lotus japonicus HOM05D001415 ORTHO05D001075 7.5e-13 77.8 63 60.3
Lalb_Chr20g0112631 Lupinus albus HOM05D001415 ORTHO05D001075 9.8e-13 77.4 50 66.0
Glyma.13G143700 Glycine max HOM05D001415 ORTHO05D001075 1.3e-12 77.0 55 61.8
VMungo0720G3116 Vigna mungo HOM05D001415 ORTHO05D001075 1.3e-12 77.0 49 69.4
AL4G33230 Arabidopsis lyrata HOM05D001415 ORTHO05D001075 2.2e-12 76.3 39 74.4
Glyma.03G182700 Glycine max HOM05D001415 ORTHO05D001075 2.2e-12 76.3 64 56.2
BcaC01g05622 Brassica carinata HOM05D001415 ORTHO05D001075 2.8e-12 75.9 40 75.0
A03p20360 Brassica napus HOM05D001415 ORTHO05D001075 2.8e-12 75.9 40 75.0
C03p23940 Brassica napus HOM05D001415 ORTHO05D001075 2.8e-12 75.9 40 75.0
BraA03t11281Z Brassica rapa HOM05D001415 ORTHO05D001075 2.8e-12 75.9 40 75.0
CANSAT80G1980 Cannabis sativa HOM05D001415 ORTHO05D001075 3.7e-12 75.5 37 81.1
Carub.0004s1883 Capsella rubella HOM05D001415 ORTHO05D001075 3.7e-12 75.5 40 72.5
BcaB01g03804 Brassica carinata HOM05D001415 ORTHO05D001075 4.9e-12 75.1 37 78.4
Gohir.A04G072400 Gossypium hirsutum HOM05D001415 ORTHO05D001075 4.9e-12 75.1 49 69.4
Gohir.A09G147800 Gossypium hirsutum HOM05D001415 ORTHO05D001075 4.9e-12 75.1 53 66.0
Gohir.D04G111000 Gossypium hirsutum HOM05D001415 ORTHO05D001075 4.9e-12 75.1 49 69.4
Gorai.009G415100 Gossypium raimondii HOM05D001415 ORTHO05D001075 4.9e-12 75.1 49 69.4
BolC3t14783H Brassica oleracea HOM05D001415 ORTHO05D001075 8.3e-12 74.3 40 72.5
BcaC02g11823 Brassica carinata HOM05D001415 ORTHO05D001075 1.1e-11 73.9 41 68.3
BcaC02g11824 Brassica carinata HOM05D001415 ORTHO05D001075 1.1e-11 73.9 41 68.3
C04p10960 Brassica napus HOM05D001415 ORTHO05D001075 1.1e-11 73.9 41 68.3
BolC4t22690H Brassica oleracea HOM05D001415 ORTHO05D001075 1.1e-11 73.9 41 68.3
A05p08830 Brassica napus HOM05D001415 ORTHO05D001075 1.8e-11 73.2 40 72.5
BraA05t19850Z Brassica rapa HOM05D001415 ORTHO05D001075 1.8e-11 73.2 40 72.5
BolC4t28054H Brassica oleracea HOM05D001415 ORTHO05D001075 4.1e-11 72.0 40 70.0
BcaB06g28964 Brassica carinata HOM05D001415 ORTHO05D001075 5.4e-11 71.6 40 67.5
A04p28260 Brassica napus HOM05D001415 ORTHO05D001075 7.0e-11 71.2 40 67.5
C04p65620 Brassica napus HOM05D001415 ORTHO05D001075 7.0e-11 71.2 48 58.3
GSVIVG01025722001 Vitis vinifera HOM05D001415 ORTHO05D001075 7.0e-11 71.2 34 85.3
BcaC02g07562 Brassica carinata HOM05D001415 ORTHO05D001075 9.2e-11 70.9 40 67.5
BcaC02g07563 Brassica carinata HOM05D001415 ORTHO05D001075 9.2e-11 70.9 40 67.5
BcaC02g07564 Brassica carinata HOM05D001415 ORTHO05D001075 9.2e-11 70.9 40 67.5
BcaB02g09311 Brassica carinata HOM05D001415 ORTHO05D001075 2.0e-10 69.7 40 70.0
Prupe.6G233800 Prunus persica HOM05D001415 ORTHO05D001075 2.0e-10 69.7 53 66.0
Gohir.A11G324200 Gossypium hirsutum HOM05D001415 ORTHO05D001075 2.7e-10 69.3 37 83.8
Manes.10G049900 Manihot esculenta HOM05D001415 ORTHO05D001075 7.8e-10 67.8 36 75.0
Prupe.2G209600 Prunus persica HOM05D001415 ORTHO05D001075 1.0e-09 67.4 36 72.2
Gohir.D11G343300 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.3e-09 67.0 60 60.0
Gorai.007G373400 Gossypium raimondii HOM05D001415 ORTHO05D001075 1.3e-09 67.0 65 56.9
TPR.G20214 Trifolium pratense HOM05D001415 ORTHO05D001075 1.3e-09 67.0 49 59.2
CANSAT56G2970 Cannabis sativa HOM05D001415 ORTHO05D001075 1.7e-09 66.6 63 49.2
MD07G1170600 Malus domestica HOM05D001415 ORTHO05D001075 1.7e-09 66.6 36 69.4
BcaC02g07565 Brassica carinata HOM05D001415 ORTHO05D001075 2.3e-09 66.2 40 65.0
Potri.010G226250 Populus trichocarpa HOM05D001415 ORTHO05D001075 2.3e-09 66.2 46 60.9
MD01G1103800 Malus domestica HOM05D001415 ORTHO05D001075 3.8e-09 65.5 36 69.4
Manes.07G133164 Manihot esculenta HOM05D001415 ORTHO05D001075 3.8e-09 65.5 35 71.4
THA.LOC109116388 Tarenaya hassleriana HOM05D001415 ORTHO05D001075 3.8e-09 65.5 48 58.3
Nn2g13768 Nelumbo nucifera HOM05D001415 ORTHO05D001075 6.6e-09 64.7 36 66.7
ClCG04G009250 Citrullus lanatus HOM05D001415 ORTHO05D001075 8.6e-09 64.3 38 76.3
Thecc.10G082100 Theobroma cacao HOM05D001415 ORTHO05D001075 8.6e-09 64.3 47 53.2
CiPaw.01G269600 Carya illinoinensis HOM05D001415 ORTHO05D001075 1.1e-08 63.9 36 66.7
Potri.008G035900 Populus trichocarpa HOM05D001415 ORTHO05D001075 1.1e-08 63.9 46 56.5
CAN.G900.45 Capsicum annuum HOM05D001415 ORTHO05D001075 1.5e-08 63.5 33 75.8
COL.COLO4_17147 Corchorus olitorius HOM05D001415 ORTHO05D001075 1.5e-08 63.5 36 61.1
Nn2g11570 Nelumbo nucifera HOM05D001415 ORTHO05D001075 1.9e-08 63.2 36 63.9
TWI74G0876 Tripterygium wilfordii HOM05D001415 ORTHO05D001075 1.9e-08 63.2 44 65.9
Migut.J00518 Erythranthe guttata HOM05D001415 ORTHO05D001075 2.5e-08 62.8 33 75.8
Gohir.A05G293900 Gossypium hirsutum HOM05D001415 ORTHO05D001075 2.5e-08 62.8 35 62.9
Gohir.D05G294600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 2.5e-08 62.8 35 62.9
Gorai.009G311300 Gossypium raimondii HOM05D001415 ORTHO05D001075 2.5e-08 62.8 35 62.9
unitig_8.g4710 Utricularia gibba HOM05D001415 ORTHO05D001075 2.5e-08 62.8 33 78.8
SHI12464 Sapria himalayana HOM05D001415 ORTHO05D001075 3.3e-08 62.4 33 75.8
HanXRQChr02g0053421 Helianthus annuus HOM05D001415 ORTHO05D001075 4.3e-08 62.0 33 72.7
DCAR_020825 Daucus carota HOM05D001415 ORTHO05D001075 5.6e-08 61.6 39 69.2
Medtr1g063830 Medicago truncatula HOM05D001415 ORTHO05D001075 5.6e-08 61.6 37 64.9
Sed0022297 Sechium edule HOM05D001415 ORTHO05D001075 7.3e-08 61.2 63 52.4
CSS0026842 Camellia sinensis var. sinensis HOM05D001415 ORTHO05D001075 9.5e-08 60.8 36 61.1
Phvul.007G098500 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 9.5e-08 60.8 37 64.9
A09p46240 Brassica napus HOM05D001415 ORTHO05D001075 1.2e-07 60.5 37 67.6
BraA09t40087Z Brassica rapa HOM05D001415 ORTHO05D001075 1.2e-07 60.5 37 67.6
Gohir.A10G203600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.6e-07 60.1 49 49.0
Gohir.D10G211700 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.6e-07 60.1 49 49.0
Gorai.011G237600 Gossypium raimondii HOM05D001415 ORTHO05D001075 1.6e-07 60.1 49 49.0
BcaB01g00298 Brassica carinata HOM05D001415 ORTHO05D001075 2.1e-07 59.7 63 47.6
BcaB01g00299 Brassica carinata HOM05D001415 ORTHO05D001075 2.1e-07 59.7 63 47.6
BcaC07g39683 Brassica carinata HOM05D001415 ORTHO05D001075 2.1e-07 59.7 63 47.6
C08p28460 Brassica napus HOM05D001415 ORTHO05D001075 2.1e-07 59.7 63 47.6
BolC8t50454H Brassica oleracea HOM05D001415 ORTHO05D001075 2.1e-07 59.7 63 47.6
Ah.08g211680 Amaranthus hybridus HOM05D001415 ORTHO05D001075 2.8e-07 59.3 32 71.9
A07p21460 Brassica napus HOM05D001415 ORTHO05D001075 2.8e-07 59.3 40 62.5
BraA07t29833Z Brassica rapa HOM05D001415 ORTHO05D001075 2.8e-07 59.3 40 62.5
HanXRQChr14g0454501 Helianthus annuus HOM05D001415 ORTHO05D001075 4.7e-07 58.5 50 58.0
Lsat_1_v5_gn_6_25220 Lactuca sativa HOM05D001415 ORTHO05D001075 4.7e-07 58.5 69 46.4
CsaV3_6G039840 Cucumis sativus L. HOM05D001415 ORTHO05D001075 6.1e-07 58.2 65 49.2
Glyma.20G182300 Glycine max HOM05D001415 ORTHO05D001075 6.1e-07 58.2 36 63.9
Sed0021325 Sechium edule HOM05D001415 ORTHO05D001075 6.1e-07 58.2 73 46.6
Migut.L01694 Erythranthe guttata HOM05D001415 ORTHO05D001075 8.0e-07 57.8 30 83.3
Glyma.10G122700 Glycine max HOM05D001415 ORTHO05D001075 8.0e-07 57.8 49 49.0
Glyma.10G208400 Glycine max HOM05D001415 ORTHO05D001075 8.0e-07 57.8 37 62.2
arahy.Tifrunner.gnm1.ann1.CC2P36 Arachis hypogaea HOM05D001415 ORTHO05D001075 1.0e-06 57.4 37 59.5
CiPaw.02G172500 Carya illinoinensis HOM05D001415 ORTHO05D001075 1.0e-06 57.4 35 62.9
Gohir.D04G004300 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.0e-06 57.4 43 53.5
Phvul.001G233300 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 1.0e-06 57.4 61 42.6
AL5G34120 Arabidopsis lyrata HOM05D001415 ORTHO05D001075 2.3e-06 56.2 37 62.2
Gohir.A13G196900 Gossypium hirsutum HOM05D008584 ORTHO05D010813 2.3e-06 56.2 33 66.7
Gohir.D13G202200 Gossypium hirsutum HOM05D008584 ORTHO05D010813 2.3e-06 56.2 33 66.7
Gorai.013G231100 Gossypium raimondii HOM05D008584 ORTHO05D010813 2.3e-06 56.2 33 66.7
Medtr3g067980 Medicago truncatula HOM05D001415 ORTHO05D001075 2.3e-06 56.2 64 40.6
Phvul.007G098400 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 3.0e-06 55.8 37 54.1
Phvul.007G235700 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 3.0e-06 55.8 36 58.3
Gohir.A05G411700 Gossypium hirsutum HOM05D001415 ORTHO05D001075 5.2e-06 55.1 43 51.2
Medtr2g097570 Medicago truncatula HOM05D001415 ORTHO05D001075 5.2e-06 55.1 32 62.5
CARHR134540 Cardamine hirsuta HOM05D001415 ORTHO05D001075 6.8e-06 54.7 59 44.1
Lalb_Chr02g0152101 Lupinus albus HOM05D001415 ORTHO05D001075 6.8e-06 54.7 45 51.1
PSO274G0001 Papaver somniferum HOM05D001415 ORTHO05D001075 6.8e-06 54.7 54 48.1
PSO513G0025 Papaver somniferum HOM05D001415 ORTHO05D001075 6.8e-06 54.7 54 48.1
Sed0002507 Sechium edule HOM05D001415 ORTHO05D001075 6.8e-06 54.7 36 55.6
Sed0003934 Sechium edule HOM05D001415 ORTHO05D001075 6.8e-06 54.7 61 42.6
AT3G53232 Arabidopsis thaliana HOM05D001415 ORTHO05D001075 8.9e-06 54.3 37 56.8
CARHR163060 Cardamine hirsuta HOM05D001415 ORTHO05D001075 8.9e-06 54.3 37 62.2
Glyma.10G208500 Glycine max HOM05D001415 ORTHO05D001075 8.9e-06 54.3 49 51.0


User provided reference genes

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