Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G3809 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.1e-130 469.9 237 100.0
FAN14G5252 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.1e-130 469.9 237 100.0
FvH4_6g29950 Fragaria vesca HOM05D003762 ORTHO05D004374 5.6e-130 467.6 237 99.6
FAN09G0714 Fragaria x ananassa HOM05D003762 ORTHO05D004374 5.6e-130 467.6 237 99.2
FAN02G0052 Fragaria x ananassa HOM05D003762 ORTHO05D004374 8.1e-129 463.8 237 98.7
RcHm_v2.0_Chr2g0135951 Rosa chinensis HOM05D003762 ORTHO05D004374 3.1e-112 408.7 237 89.5
RcHm_v2.0_Chr6g0271261 Rosa chinensis HOM05D003762 ORTHO05D004374 2.5e-109 399.1 237 86.9
RcHm_v2.0_Chr6g0271271 Rosa chinensis HOM05D003762 ORTHO05D004374 2.7e-108 395.6 237 86.5
CiPaw.09G152500 Carya illinoinensis HOM05D003762 ORTHO05D004374 5.7e-74 281.6 240 59.2
Thecc.06G021200 Theobroma cacao HOM05D003762 ORTHO05D004374 1.7e-73 280.0 238 58.0
QL01p011549 Quercus lobata HOM05D003762 ORTHO05D004374 2.2e-73 279.6 239 58.6
Duzib160G0900 Durio zibethinus HOM05D003762 ORTHO05D004374 6.3e-73 278.1 238 57.6
Manes.04G114300 Manihot esculenta HOM05D003762 ORTHO05D004374 5.3e-72 275.0 230 59.1
Gohir.A02G058000 Gossypium hirsutum HOM05D003762 ORTHO05D004374 1.3e-70 270.4 228 57.9
Gorai.005G071700 Gossypium raimondii HOM05D003762 ORTHO05D004374 1.3e-70 270.4 228 57.5
Gohir.D02G063800 Gossypium hirsutum HOM05D003762 ORTHO05D004374 8.5e-70 267.7 228 57.0
GSVIVG01004444001 Vitis vinifera HOM05D003762 ORTHO05D004374 9.4e-69 264.2 241 56.8
Cfa001979 Carpinus fangiana HOM05D003762 ORTHO05D004374 1.2e-68 263.8 240 55.8
Prupe.1G576300 Prunus persica HOM05D003762 ORTHO05D004374 4.7e-68 261.9 235 57.4
Prupe.5G067300 Prunus persica HOM05D003762 ORTHO05D004374 4.7e-68 261.9 235 57.9
FAN09G1243 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.5e-66 256.9 235 57.0
Nn1g05222 Nelumbo nucifera HOM05D003762 ORTHO05D004374 1.5e-66 256.9 233 56.2
Phvul.008G021700 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 1.5e-66 256.9 240 55.4
Potri.003G033600 Populus trichocarpa HOM05D003762 ORTHO05D004374 2.0e-66 256.5 242 55.0
Glyma.18G279200 Glycine max HOM05D003762 ORTHO05D004374 3.4e-66 255.8 240 55.0
Potri.018G000800 Populus trichocarpa HOM05D003762 ORTHO05D004374 4.4e-66 255.4 240 54.2
Cpa.g.sc37.21 Carica papaya HOM05D003762 ORTHO05D004374 5.7e-66 255.0 230 57.0
Ciclev10026399m.g Citrus clementina HOM05D003762 ORTHO05D004374 1.3e-65 253.8 232 56.9
Dinv08128 Davidia involucrata HOM05D003762 ORTHO05D004374 2.2e-65 253.1 237 53.6
ClCG02G018290 Citrullus lanatus HOM05D003762 ORTHO05D004374 4.8e-65 251.9 241 53.1
MD15G1431400 Malus domestica HOM05D003762 ORTHO05D004374 4.8e-65 251.9 200 60.0
VMungo1383G0008 Vigna mungo HOM05D003762 ORTHO05D004374 4.8e-65 251.9 240 54.6
CANSAT35G0296 Cannabis sativa HOM05D003762 ORTHO05D004374 1.4e-64 250.4 239 54.0
Sabra01G0002500 Salix brachista HOM05D003762 ORTHO05D004374 1.8e-64 250.0 240 52.9
Potri.001G003700 Populus trichocarpa HOM05D003762 ORTHO05D004374 4.1e-64 248.8 240 52.5
TWI56G0980 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 5.3e-64 248.4 240 53.8
Actinidia15994 Actinidia chinensis HOM05D003762 ORTHO05D004374 2.7e-63 246.1 237 52.3
Atru.chr1.3040 Acer truncatum HOM05D003762 ORTHO05D004374 5.9e-63 245.0 230 53.0
CSS0030442 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 1.0e-62 244.2 238 53.4
arahy.Tifrunner.gnm1.ann1.VKA3KK Arachis hypogaea HOM05D003762 ORTHO05D004374 5.0e-62 241.9 240 53.3
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 6.5e-62 241.5 234 55.1
arahy.Tifrunner.gnm1.ann1.IN3X4V Arachis hypogaea HOM05D003762 ORTHO05D004374 1.9e-61 240.0 240 52.9
Cc08_g05300 Coffea canephora HOM05D003762 ORTHO05D004374 2.5e-61 239.6 240 49.2
Sed0021000 Sechium edule HOM05D003762 ORTHO05D004374 2.5e-61 239.6 242 52.1
CSS0038493 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 3.2e-61 239.2 238 52.1
Lj1g0002607 Lotus japonicus HOM05D003762 ORTHO05D004374 5.5e-61 238.4 239 51.0
MELO3C014058.2 Cucumis melo HOM05D003762 ORTHO05D004374 7.2e-61 238.0 244 49.2
Rhsim05G0080000 Rhododendron simsii HOM05D003762 ORTHO05D004374 7.2e-61 238.0 238 49.6
ClCG00G001180 Citrullus lanatus HOM05D003762 ORTHO05D004374 1.6e-60 236.9 244 48.8
ClCG10G003800 Citrullus lanatus HOM05D003762 ORTHO05D004374 1.6e-60 236.9 244 48.8
CsaV3_3G003760 Cucumis sativus L. HOM05D003762 ORTHO05D004374 1.4e-59 233.8 244 48.4
COL.COLO4_12944 Corchorus olitorius HOM05D003762 ORTHO05D004374 1.8e-59 233.4 244 49.6
TWI36G0443 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 8.8e-59 231.1 240 50.0
Eucgr.F01771 Eucalyptus grandis HOM05D003762 ORTHO05D004374 1.2e-58 230.7 230 49.1
vmacro11452 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 1.5e-58 230.3 238 49.6
PGR044G0538 Punica granatum HOM05D003762 ORTHO05D004374 7.5e-58 228.0 232 53.0
Hma1.2p1_0515F.1_g170140 Hydrangea macrophylla HOM05D003762 ORTHO05D004374 1.7e-57 226.9 235 50.6
Rhsim11G0183700 Rhododendron simsii HOM05D003762 ORTHO05D004374 1.7e-57 226.9 230 49.6
Aqoxy6G02090 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 1.1e-56 224.2 229 49.3
DCAR_002196 Daucus carota HOM05D003762 ORTHO05D004374 2.0e-55 219.9 240 48.8
Lalb_Chr17g0343451 Lupinus albus HOM05D003762 ORTHO05D004374 2.7e-55 219.5 232 49.1
MSTRG.11877 Avicennia marina HOM05D003762 ORTHO05D004374 4.5e-55 218.8 230 45.7
MBI14_g44482_MAGBIO Magnolia biondii HOM05D003762 ORTHO05D004374 5.9e-55 218.4 234 48.7
FAN02G2701 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.3e-54 217.2 215 56.3
Oeu056611.1 Olea europaea HOM05D003762 ORTHO05D004374 1.7e-54 216.9 236 45.8
THA.LOC104798921 Tarenaya hassleriana HOM05D003762 ORTHO05D004374 1.7e-54 216.9 234 50.0
PGSC0003DMG402007612 Solanum tuberosum HOM05D003762 ORTHO05D004374 2.9e-54 216.1 235 44.7
CAN.G812.32 Capsicum annuum HOM05D003762 ORTHO05D004374 5.0e-54 215.3 241 46.1
Aqoxy6G01949 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 6.6e-54 214.9 227 46.7
Aa31sc38G110 Aethionema arabicum HOM05D003762 ORTHO05D004374 1.5e-53 213.8 231 48.5
Sopen08g024260 Solanum pennellii HOM05D003762 ORTHO05D004374 1.5e-53 213.8 235 45.1
SGA_v2.0_scaffold120G32921 Striga asiatica HOM05D003762 ORTHO05D004374 3.3e-53 212.6 229 47.2
Haze_16536 Corylus avellana HOM05D003762 ORTHO05D004374 4.2e-53 212.2 211 53.1
Sed0000714 Sechium edule HOM05D003762 ORTHO05D004374 7.2e-53 211.5 238 46.2
Eucgr.J01004 Eucalyptus grandis HOM05D003762 ORTHO05D004374 9.5e-53 211.1 225 49.3
Psat4g001640 Pisum sativum HOM05D003762 ORTHO05D004374 2.1e-52 209.9 238 45.0
Nitab4.5_0000255g0050 Nicotiana tabacum HOM05D003762 ORTHO05D004374 2.8e-52 209.5 240 45.0
Ca_06841_v3 Cicer arietinum L. HOM05D003762 ORTHO05D004374 6.1e-52 208.4 231 46.8
Migut.J01128 Erythranthe guttata HOM05D003762 ORTHO05D004374 6.1e-52 208.4 237 43.9
Nitab4.5_0000898g0100 Nicotiana tabacum HOM05D003762 ORTHO05D004374 6.1e-52 208.4 240 45.0
Hund13161 Selenicereus undatus HOM05D003762 ORTHO05D004374 6.1e-52 208.4 237 45.6
Peaxi162Scf00053g00522 Petunia axillaris HOM05D003762 ORTHO05D004374 1.0e-51 207.6 238 46.2
arahy.Tifrunner.gnm1.ann1.RFRX47 Arachis hypogaea HOM05D003762 ORTHO05D004374 1.4e-51 207.2 229 46.3
SGA_v2.0_scaffold146G36137 Striga asiatica HOM05D003762 ORTHO05D004374 4.0e-51 205.7 235 45.1
arahy.Tifrunner.gnm1.ann1.1PQR27 Arachis hypogaea HOM05D003762 ORTHO05D004374 6.8e-51 204.9 229 45.9
TPR.G19896 Trifolium pratense HOM05D003762 ORTHO05D004374 1.5e-50 203.8 238 43.7
Aa31LG11G3050 Aethionema arabicum HOM05D003762 ORTHO05D004374 5.7e-50 201.8 232 47.4
arahy.Tifrunner.gnm1.ann1.3GPH34 Arachis hypogaea HOM05D003762 ORTHO05D004374 9.8e-50 201.1 229 44.5
PSO455G0078 Papaver somniferum HOM05D003762 ORTHO05D004374 9.8e-50 201.1 235 42.6
Ciclev10009494m.g Citrus clementina HOM05D003762 ORTHO05D004374 1.7e-49 200.3 232 49.1
ECA246G1447 Erigeron canadensis HOM05D000759 ORTHO05D000574 2.8e-49 199.5 229 43.2
Ah.03g133930 Amaranthus hybridus HOM05D003762 ORTHO05D004374 3.7e-49 199.1 230 46.1
Phvul.010G127200 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 3.7e-49 199.1 233 45.9
Glyma.09G089900 Glycine max HOM05D003762 ORTHO05D004374 4.9e-49 198.7 235 45.5
ECA240G1229 Erigeron canadensis HOM05D003762 ORTHO05D004374 1.8e-48 196.8 229 44.1
Glyma.07G041800 Glycine max HOM05D003762 ORTHO05D004374 1.8e-48 196.8 230 44.8
Lj8P331T26 Lonicera japonica HOM05D003762 ORTHO05D004374 1.8e-48 196.8 197 50.8
HanXRQChr17g0537091 Helianthus annuus HOM05D003762 ORTHO05D004374 5.4e-48 195.3 199 46.2
DCAR_030901 Daucus carota HOM05D003762 ORTHO05D004374 9.2e-48 194.5 241 44.0
AT5G23710 Arabidopsis thaliana HOM05D003762 ORTHO05D004374 3.5e-47 192.6 233 45.5
HPP92_015034 Vanilla planifolia HOM05D003762 ORTHO05D004374 3.5e-47 192.6 204 48.0
Lsat_1_v5_gn_3_23460 Lactuca sativa HOM05D003762 ORTHO05D004374 1.3e-46 190.7 223 42.2
Sp2g23520 Schrenkiella parvula HOM05D003762 ORTHO05D004374 1.3e-46 190.7 233 43.8
PGSC0003DMG400003846 Solanum tuberosum HOM05D003762 ORTHO05D004374 1.3e-46 190.7 241 42.3
Sc24g0003260 Simmondsia chinensis HOM05D003762 ORTHO05D004374 1.7e-46 190.3 240 43.8
PSO170G1737 Papaver somniferum HOM05D003762 ORTHO05D004374 5.0e-46 188.7 233 43.3
ATR0580G255 Amborella trichopoda HOM05D003762 ORTHO05D004374 1.5e-45 187.2 220 42.3
FAN05G0849 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.5e-45 187.2 207 51.7
TAR625G0731 Trochodendron aralioides HOM05D003762 ORTHO05D004374 1.9e-45 186.8 187 50.8
Carub.0006s2146 Capsella rubella HOM05D003762 ORTHO05D004374 5.6e-45 185.3 233 42.1
Thhalv10005351m.g Eutrema salsugineum HOM05D003762 ORTHO05D004374 5.6e-45 185.3 234 43.2
A06p34610 Brassica napus HOM05D003762 ORTHO05D004374 7.3e-45 184.9 233 42.5
BraA06t26389Z Brassica rapa HOM05D003762 ORTHO05D004374 7.3e-45 184.9 233 42.5
HanXRQChr03g0081311 Helianthus annuus HOM05D003762 ORTHO05D004374 9.5e-45 184.5 229 40.6
AUR62024643 Chenopodium quinoa HOM05D003762 ORTHO05D004374 2.1e-44 183.3 233 42.9
BcaNung01845 Brassica carinata HOM05D003762 ORTHO05D004374 2.8e-44 183.0 233 42.1
C07p43880 Brassica napus HOM05D003762 ORTHO05D004374 2.8e-44 183.0 233 42.1
BolC7t44916H Brassica oleracea HOM05D003762 ORTHO05D004374 2.8e-44 183.0 233 42.1
Mapoly0090s0008 Marchantia polymorpha HOM05D003762 ORTHO05D004374 3.6e-44 182.6 216 42.6
SalBow2G2359 Salvia bowleyana HOM05D003762 ORTHO05D004374 8.0e-44 181.4 240 40.4
TPR.G20064 Trifolium pratense HOM05D003762 ORTHO05D004374 1.0e-43 181.0 237 41.4
TAR636G2311 Trochodendron aralioides HOM05D003762 ORTHO05D004374 5.2e-43 178.7 154 53.2
AL6G34980 Arabidopsis lyrata HOM05D003762 ORTHO05D004374 1.5e-42 177.2 233 40.8
Atru.chr1.3022 Acer truncatum HOM05D003762 ORTHO05D004374 9.8e-42 174.5 154 52.6
CARHR189840 Cardamine hirsuta HOM05D003762 ORTHO05D004374 1.3e-41 174.1 233 41.2
BolC9t53671H Brassica oleracea HOM05D003762 ORTHO05D004374 3.7e-41 172.6 240 42.5
AagrBONN_evm.TU.Sc2ySwM_228.1250 Anthoceros agrestis HOM05D003762 ORTHO05D004374 4.9e-41 172.2 227 38.8
Medtr7g109780 Medicago truncatula HOM05D003762 ORTHO05D004374 4.1e-40 169.1 194 41.8
BcaC04g23509 Brassica carinata HOM05D003762 ORTHO05D004374 9.2e-40 167.9 237 41.4
CAN.G1683.1 Capsicum annuum HOM05D003762 ORTHO05D004374 3.5e-39 166.0 211 42.2
CAN.G2872.1 Capsicum annuum HOM05D003762 ORTHO05D004374 4.6e-39 165.6 212 42.9
Pp3c22_6800 Physcomitrium patens HOM05D003762 ORTHO05D004374 4.6e-39 165.6 216 37.5
BraA09t36329Z Brassica rapa HOM05D003762 ORTHO05D004374 7.8e-39 164.9 240 41.7
Peaxi162Scf00573g00044 Petunia axillaris HOM05D003762 ORTHO05D004374 1.3e-38 164.1 231 39.4
MELO3C007348.2 Cucumis melo HOM05D003762 ORTHO05D004374 5.0e-38 162.2 201 43.3
Zm00001eb276730 Zea mays HOM05D003762 ORTHO05D004374 6.6e-38 161.8 213 39.9
Zm00001eb386260 Zea mays HOM05D003762 ORTHO05D004374 6.6e-38 161.8 213 39.9
Solyc08g075580.3 Solanum lycopersicum HOM05D003762 ORTHO05D004374 1.9e-37 160.2 151 49.0
A09p06830 Brassica napus HOM05D003762 ORTHO05D004374 9.5e-37 157.9 240 40.8
HPP92_015113 Vanilla planifolia HOM05D003762 ORTHO05D004374 1.2e-36 157.5 154 48.7
C09p07550 Brassica napus HOM05D003762 ORTHO05D004374 1.6e-36 157.1 238 39.9
Medtr0003s0690 Medicago truncatula HOM05D003762 ORTHO05D004374 4.7e-36 155.6 177 41.2
BcaB04g19852 Brassica carinata HOM05D003762 ORTHO05D004374 6.2e-36 155.2 234 39.3
BcaB04g19853 Brassica carinata HOM05D003762 ORTHO05D004374 6.2e-36 155.2 234 39.3
QL03p059502 Quercus lobata HOM05D003762 ORTHO05D004374 1.8e-35 153.7 229 36.7
Lsat_1_v5_gn_3_23440 Lactuca sativa HOM05D003762 ORTHO05D004374 6.8e-35 151.8 169 43.8
PSO455G0143 Papaver somniferum HOM05D003762 ORTHO05D004374 8.9e-35 151.4 229 37.6
vmacro16904 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 3.4e-34 149.4 165 41.2
Oeu056610.1 Olea europaea HOM05D003762 ORTHO05D004374 2.9e-33 146.4 147 46.3
VMungo0331G0552 Vigna mungo HOM05D003762 ORTHO05D004374 3.7e-33 146.0 216 40.3
Cre07.g314950 Chlamydomonas reinhardtii HOM05D003762 ORTHO05D004374 8.3e-33 144.8 216 36.6
QL06p036898 Quercus lobata HOM05D003762 ORTHO05D004374 1.4e-32 144.1 122 55.7
unitig_0.g2831 Utricularia gibba HOM05D003762 ORTHO05D004374 3.2e-32 142.9 218 34.4
MD08G1239800 Malus domestica HOM05D003762 ORTHO05D004374 2.7e-31 139.8 117 57.3
Oeu039594.1 Olea europaea HOM05D003762 ORTHO05D004374 4.6e-31 139.0 168 42.3
Rhsim12G0192200 Rhododendron simsii HOM05D003762 ORTHO05D004374 6.0e-31 138.7 144 45.8
MCO15G473 Micromonas commoda HOM05D003762 ORTHO05D004374 1.0e-30 137.9 227 34.4
Zm00001eb356740 Zea mays HOM05D003762 ORTHO05D004374 1.9e-29 133.7 190 37.9
FvH4_6g41460 Fragaria vesca HOM05D003762 ORTHO05D004374 7.3e-29 131.7 134 56.0
FAN14G0588 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.2e-28 131.0 150 50.7
Atru.chr1.3024 Acer truncatum HOM05D003762 ORTHO05D004374 3.4e-26 122.9 109 56.9
VMungo0720G1683 Vigna mungo HOM05D003762 ORTHO05D004374 1.3e-22 110.9 139 43.2
Aqoxy6G01956 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 1.4e-19 100.9 92 47.8
HanXRQChr03g0081131 Helianthus annuus HOM05D003762 ORTHO05D004374 1.4e-19 100.9 79 54.4
QL05p029016 Quercus lobata HOM05D003762 ORTHO05D004374 2.4e-19 100.1 88 53.4
AUR62011796 Chenopodium quinoa HOM05D003762 ORTHO05D004374 1.1e-16 91.3 112 49.1
Atru.chr1.3033 Acer truncatum HOM05D003762 ORTHO05D004374 4.6e-15 85.9 78 50.0
Nitab4.5_0009310g0060 Nicotiana tabacum HOM05D003762 ORTHO05D004374 7.8e-15 85.1 91 41.8
Nn1g05046 Nelumbo nucifera HOM05D002280 ORTHO05D002322 1.7e-14 84.0 88 46.6
Potri.003G221301 Populus trichocarpa HOM05D003762 ORTHO05D004374 2.3e-14 83.6 206 31.6
SEGI_04069 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 5.1e-14 82.4 79 46.8
PRCOL_00004812 Prasinoderma coloniale HOM05D003762 ORTHO05D004374 1.1e-13 81.3 153 30.1
vmacro18986 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 2.1e-12 77.0 199 27.6
Os06g0603400 Oryza sativa ssp. japonica HOM05D003762 ORTHO05D004374 5.3e-11 72.4 57 54.4
SEGI_04929 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 3.4e-10 69.7 78 42.3
FAN14G5801 Fragaria x ananassa HOM05D003762 ORTHO05D205490 9.9e-10 68.2 34 85.3
PSO384G2135 Papaver somniferum HOM05D003762 ORTHO05D004374 1.7e-09 67.4 91 34.1
PSO384G3622 Papaver somniferum HOM05D003762 ORTHO05D004374 1.7e-09 67.4 91 34.1
TAR636G2069 Trochodendron aralioides HOM05D003762 ORTHO05D004374 2.1e-07 60.5 67 52.2
Nitab4.5_0009310g0070 Nicotiana tabacum HOM05D003419 ORTHO05D004374 6.6e-06 55.5 101 37.6


User provided reference genes

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